View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9498_low_7 (Length: 240)
Name: NF9498_low_7
Description: NF9498
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9498_low_7 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 10049547 - 10049774
Alignment:
| Q |
18 |
ctacaccttcatcaatgtc----catgagtggtactgctactgtctgattaacattgattttgaaattgaaaattcagatgggagtcactcctacaagtt |
113 |
Q |
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| T |
10049547 |
ctacaccttcatcaatgtctgtccatgtgtggtactgctactgtctgattaacattgattttgaaattgaaatttcagatgggagtcactcctacaagtt |
10049646 |
T |
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| Q |
114 |
ccgtcagcaggagaagcacattggtaatttttcacat--tgctaactatatcctaatatattgcgagattcacaataaattttaatagattccacacaca |
211 |
Q |
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| T |
10049647 |
ccgtcagcaggagaagcacattggtaatttttcacatgctg-tatctatatcctaatatattgtgagattcacaataaattttaatagattccacacaca |
10049745 |
T |
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| Q |
212 |
gttatggaaatgaatttgatgtggtaagt |
240 |
Q |
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| T |
10049746 |
gttatggaaatgaatttgatgtggtaagt |
10049774 |
T |
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