View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9499_low_12 (Length: 426)

Name: NF9499_low_12
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9499_low_12
NF9499_low_12
[»] scaffold0003 (1 HSPs)
scaffold0003 (1-426)||(25682-26107)
[»] chr7 (29 HSPs)
chr7 (1-426)||(16436052-16436477)
chr7 (74-426)||(3171903-3172256)
chr7 (86-397)||(9128655-9128967)
chr7 (38-271)||(20911716-20911951)
chr7 (177-383)||(16195661-16195865)
chr7 (297-426)||(20911939-20912068)
chr7 (330-399)||(8325422-8325491)
chr7 (326-396)||(17151034-17151105)
chr7 (356-397)||(6210574-6210615)
chr7 (177-229)||(11622031-11622084)
chr7 (356-397)||(12246474-12246515)
chr7 (177-397)||(13487797-13488014)
chr7 (356-397)||(14252963-14253004)
chr7 (356-397)||(14278127-14278168)
chr7 (177-230)||(26427287-26427340)
chr7 (356-397)||(39293370-39293411)
chr7 (356-397)||(45148083-45148124)
chr7 (354-397)||(13460840-13460883)
chr7 (329-394)||(26427122-26427188)
chr7 (356-397)||(14974189-14974230)
chr7 (356-397)||(15403665-15403706)
chr7 (356-397)||(16065057-16065098)
chr7 (356-397)||(19066114-19066155)
chr7 (187-224)||(21500896-21500933)
chr7 (181-229)||(33291399-33291448)
chr7 (356-397)||(44306900-44306941)
chr7 (183-223)||(11227624-11227664)
chr7 (183-223)||(16093507-16093547)
chr7 (186-229)||(16175298-16175342)
[»] chr3 (29 HSPs)
chr3 (38-395)||(13438556-13438916)
chr3 (74-426)||(10724952-10725295)
chr3 (83-391)||(12254141-12254451)
chr3 (83-392)||(8022757-8023069)
chr3 (186-394)||(6808918-6809124)
chr3 (178-417)||(19633259-19633496)
chr3 (320-425)||(8853513-8853618)
chr3 (83-397)||(2547791-2548105)
chr3 (308-416)||(16220307-16220415)
chr3 (38-133)||(16220071-16220167)
chr3 (356-397)||(11401079-11401120)
chr3 (356-397)||(17385351-17385392)
chr3 (356-397)||(54040207-54040248)
chr3 (356-397)||(54049494-54049535)
chr3 (177-229)||(17385507-17385559)
chr3 (327-394)||(21094218-21094286)
chr3 (356-398)||(31413910-31413952)
chr3 (356-397)||(15551127-15551168)
chr3 (356-397)||(17391840-17391881)
chr3 (327-394)||(19978361-19978429)
chr3 (362-397)||(8603174-8603209)
chr3 (356-386)||(21765307-21765337)
chr3 (358-396)||(25606936-25606974)
chr3 (327-413)||(27050223-27050309)
chr3 (356-397)||(9637725-9637766)
chr3 (186-230)||(10711464-10711509)
chr3 (356-397)||(17760066-17760107)
chr3 (356-397)||(19061386-19061427)
chr3 (356-397)||(25105584-25105625)
[»] chr1 (3 HSPs)
chr1 (104-420)||(21198989-21199304)
chr1 (356-397)||(20252698-20252739)
chr1 (356-397)||(33395840-33395881)
[»] chr8 (20 HSPs)
chr8 (70-412)||(24623295-24623636)
chr8 (89-423)||(25261828-25262161)
chr8 (267-417)||(23543734-23543884)
chr8 (38-192)||(18179027-18179184)
chr8 (57-284)||(18826929-18827154)
chr8 (326-424)||(18032829-18032927)
chr8 (38-133)||(23543603-23543708)
chr8 (356-397)||(31195906-31195947)
chr8 (178-229)||(15550308-15550360)
chr8 (178-224)||(15662368-15662414)
chr8 (356-397)||(16041166-16041207)
chr8 (356-397)||(16042842-16042883)
chr8 (356-397)||(17500518-17500559)
chr8 (356-397)||(18610760-18610801)
chr8 (356-397)||(25608642-25608683)
chr8 (356-396)||(17265409-17265449)
chr8 (177-226)||(16216552-16216602)
chr8 (356-397)||(20177661-20177702)
chr8 (356-397)||(20222388-20222429)
chr8 (186-230)||(28932831-28932876)
[»] chr6 (20 HSPs)
chr6 (85-399)||(12975026-12975341)
chr6 (38-376)||(10973326-10973665)
chr6 (38-419)||(19728666-19729064)
chr6 (178-395)||(23295742-23295959)
chr6 (327-413)||(5485934-5486020)
chr6 (330-391)||(24217359-24217421)
chr6 (356-397)||(12466180-12466221)
chr6 (186-230)||(15482334-15482379)
chr6 (356-397)||(16374881-16374922)
chr6 (356-397)||(19627830-19627871)
chr6 (356-397)||(22595123-22595164)
chr6 (356-397)||(31162518-31162559)
chr6 (356-397)||(35010943-35010984)
chr6 (183-223)||(12466005-12466045)
chr6 (178-229)||(22542053-22542105)
chr6 (362-397)||(11374489-11374524)
chr6 (362-397)||(29162148-29162183)
chr6 (359-397)||(17858014-17858052)
chr6 (356-397)||(17084982-17085023)
chr6 (178-229)||(13122255-13122307)
[»] chr5 (17 HSPs)
chr5 (38-426)||(19317789-19318194)
chr5 (38-385)||(19266891-19267243)
chr5 (304-424)||(25340903-25341024)
chr5 (112-229)||(21298359-21298478)
chr5 (112-229)||(21304065-21304184)
chr5 (112-229)||(21311902-21312021)
chr5 (356-397)||(14343508-14343549)
chr5 (356-397)||(34937951-34937992)
chr5 (361-397)||(16837014-16837050)
chr5 (327-394)||(37275801-37275869)
chr5 (352-395)||(26058400-26058443)
chr5 (358-396)||(18532420-18532458)
chr5 (358-396)||(22055384-22055422)
chr5 (191-229)||(37278239-37278276)
chr5 (356-397)||(11765053-11765094)
chr5 (186-227)||(19049553-19049594)
chr5 (330-394)||(37278072-37278137)
[»] chr2 (13 HSPs)
chr2 (108-394)||(22576541-22576825)
chr2 (152-396)||(18994764-18995007)
chr2 (355-420)||(24533276-24533341)
chr2 (178-229)||(28579344-28579396)
chr2 (356-397)||(7513682-7513723)
chr2 (356-397)||(22331166-22331207)
chr2 (356-397)||(42180029-42180070)
chr2 (356-397)||(45619700-45619741)
chr2 (327-397)||(23154430-23154501)
chr2 (327-397)||(23565687-23565758)
chr2 (185-223)||(21652981-21653019)
chr2 (358-396)||(24342999-24343037)
chr2 (177-229)||(18331808-18331861)
[»] scaffold0508 (1 HSPs)
scaffold0508 (245-420)||(5827-6002)
[»] scaffold0412 (2 HSPs)
scaffold0412 (38-286)||(1755-2004)
scaffold0412 (330-386)||(1695-1751)
[»] scaffold0024 (2 HSPs)
scaffold0024 (184-423)||(100940-101177)
scaffold0024 (87-133)||(100839-100885)
[»] scaffold0123 (3 HSPs)
scaffold0123 (177-394)||(33941-34158)
scaffold0123 (306-397)||(33830-33924)
scaffold0123 (87-133)||(34177-34223)
[»] scaffold1869 (1 HSPs)
scaffold1869 (177-413)||(780-1013)
[»] chr4 (23 HSPs)
chr4 (74-226)||(11775027-11775182)
chr4 (288-417)||(18713408-18713537)
chr4 (288-425)||(18667736-18667874)
chr4 (87-229)||(12451935-12452083)
chr4 (330-413)||(14616495-14616578)
chr4 (327-397)||(18173306-18173379)
chr4 (186-229)||(18420349-18420391)
chr4 (335-397)||(20847400-20847463)
chr4 (354-397)||(41918413-41918456)
chr4 (330-397)||(19076291-19076360)
chr4 (356-397)||(19699233-19699274)
chr4 (356-397)||(19709818-19709859)
chr4 (356-397)||(40902365-40902406)
chr4 (305-372)||(12452118-12452186)
chr4 (327-397)||(13933304-13933375)
chr4 (362-420)||(11774821-11774879)
chr4 (358-396)||(15676507-15676545)
chr4 (177-230)||(16028761-16028815)
chr4 (330-394)||(1920034-1920099)
chr4 (177-230)||(10115823-10115876)
chr4 (177-229)||(11923545-11923598)
chr4 (356-397)||(15215506-15215547)
chr4 (326-425)||(18420489-18420589)
[»] scaffold0002 (2 HSPs)
scaffold0002 (183-366)||(95101-95282)
scaffold0002 (330-397)||(295582-295652)
[»] scaffold0161 (2 HSPs)
scaffold0161 (304-397)||(3767-3863)
scaffold0161 (177-229)||(3346-3399)
[»] scaffold0040 (1 HSPs)
scaffold0040 (38-284)||(48564-48808)
[»] scaffold0005 (1 HSPs)
scaffold0005 (330-413)||(200799-200882)
[»] scaffold0317 (1 HSPs)
scaffold0317 (356-397)||(15511-15552)
[»] scaffold0299 (1 HSPs)
scaffold0299 (331-397)||(9663-9732)
[»] scaffold0396 (1 HSPs)
scaffold0396 (356-397)||(166-207)
[»] scaffold0186 (1 HSPs)
scaffold0186 (356-397)||(11533-11574)
[»] scaffold0138 (3 HSPs)
scaffold0138 (356-397)||(26806-26847)
scaffold0138 (356-397)||(27821-27862)
scaffold0138 (356-397)||(39817-39858)
[»] scaffold0115 (1 HSPs)
scaffold0115 (356-397)||(20219-20260)
[»] scaffold0009 (1 HSPs)
scaffold0009 (356-397)||(256041-256082)
[»] scaffold0231 (2 HSPs)
scaffold0231 (183-223)||(14396-14436)
scaffold0231 (356-397)||(14588-14629)
[»] scaffold0218 (1 HSPs)
scaffold0218 (89-133)||(28039-28083)
[»] scaffold0070 (2 HSPs)
scaffold0070 (177-229)||(46912-46964)
scaffold0070 (330-397)||(46751-46819)
[»] scaffold0205 (1 HSPs)
scaffold0205 (356-394)||(4141-4179)
[»] scaffold0058 (1 HSPs)
scaffold0058 (326-424)||(79300-79398)
[»] scaffold0468 (1 HSPs)
scaffold0468 (364-397)||(12630-12663)
[»] scaffold0191 (1 HSPs)
scaffold0191 (356-397)||(315-356)
[»] scaffold0112 (1 HSPs)
scaffold0112 (356-397)||(12211-12252)
[»] scaffold0090 (1 HSPs)
scaffold0090 (356-397)||(36421-36462)
[»] scaffold0086 (1 HSPs)
scaffold0086 (356-397)||(11063-11104)
[»] scaffold0017 (1 HSPs)
scaffold0017 (356-397)||(11127-11168)
[»] scaffold0282 (1 HSPs)
scaffold0282 (186-230)||(20432-20474)


Alignment Details
Target: scaffold0003 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 25682 - 26107
Alignment:
Q  1 aaattctgatttgaagagagagaaagtgagtagagaaatgattatcatgttgatacttttggtgatatgaatagatgaattaatgatgacttattgatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25682 aaattctgatttgaagagagagaaagtgagtagagaaatgattataatattgatacttttggtgatatgaatagatgaattaatgatgacttattgatcg 25781  T
Q  101 taaggatgtaagtatttgataatgcaattgttgtaaataacataattcagggtgattgttatgttaatgtctatgaggtgaattatgcattgtcgagtcc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  25782 taaggatgtaagtatttgataatgcaattgttgtgaataacataattcggggtgattgttatgttaatgtctatgaggtgaattatgcattttcgagtcc 25881  T
Q  201 ttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcgggg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  25882 ttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttttgcagagcatagatgcgggg 25981  T
Q  301 tgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25982 tgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatc 26081  T
Q  401 tattggtgagtcgagtcttacttgat 426  Q
    ||||||||||||||||||||||||||    
T  26082 tattggtgagtcgagtcttacttgat 26107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 402; Significance: 0; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 426
Target Start/End: Original strand, 16436052 - 16436477
Alignment:
Q  1 aaattctgatttgaagagagagaaagtgagtagagaaatgattatcatgttgatacttttggtgatatgaatagatgaattaatgatgacttattgatcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16436052 aaattctgatttgaagagagagaaagtgagtagagaaatgattataatattgatacttttggtgatatgaatagatgaattaatgatgacttattgatcg 16436151  T
Q  101 taaggatgtaagtatttgataatgcaattgttgtaaataacataattcagggtgattgttatgttaatgtctatgaggtgaattatgcattgtcgagtcc 200  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  16436152 taaggatgtaagtatttgataatgcaattgttgtgaataacataattcggggtgattgttatgttaatgtctatgaggtgaattatgcattttcgagtcc 16436251  T
Q  201 ttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcgggg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16436252 ttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttttgcagagcatagatgcgggg 16436351  T
Q  301 tgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16436352 tgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatc 16436451  T
Q  401 tattggtgagtcgagtcttacttgat 426  Q
    ||||||||||||||||||||||||||    
T  16436452 tattggtgagtcgagtcttacttgat 16436477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 74 - 426
Target Start/End: Original strand, 3171903 - 3172256
Alignment:
Q  74 gatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtct 172  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||| ||||||||| | ||| ||||||||   || |||| ||||||||| ||||    
T  3171903 gatgaattaatgatgacttgttgattgtatggatgtaagtatttgataattcaattgttggtgaatgacataattggtggagattattatgttaacgtct 3172002  T
Q  173 atgaggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaa-tgcggggtgtttatta 271  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||||||||||||| | ||||||||||||||    
T  3172003 atgaggtgatttatgcattgtcgagtccttacttgaagcccatgcattcatagtcataa-tgaggtgatttgaagtatgtaaaattcggggtgtttatta 3172101  T
Q  272 catagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctag 371  Q
    |||||| |||||| | |||| ||| |||||| |||||||| |||  ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  3172102 catagcatctgcaaaacataaatgtggggtgtttattatgttggttgattcattaacggtaaaattatctccggaatcctatggtaccacatgcatctag 3172201  T
Q  372 aagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgat 426  Q
    |||||| || ||||| |||||||||||||||||  ||||| ||||| ||||||||    
T  3172202 aagagtttaaaacattgcatgcatttatctattcatgagttgagtcgtacttgat 3172256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 86 - 397
Target Start/End: Original strand, 9128655 - 9128967
Alignment:
Q  86 atgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcaggg-tgattgttatgttaatgtctatgaggtgaat 183  Q
    ||||||| | ||| ||| |||||||||||||||||||||||||||||| | | |||||||| |  ||| ||||| ||||||||||||||||| ||||| |    
T  9128655 atgacttgtcgattgtatggatgtaagtatttgataatgcaattgttggtgagtaacataaatgtgggctgattattatgttaatgtctatggggtgatt 9128754  T
Q  184 tatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgat-ttgaagtatgtaaatgcggggtgtttattacatagcttctg 282  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||||  |||| |||| ||||||||| ||||||||||||| |||||||||||||||||    
T  9128755 tatgcattgtcaagtccttatttgaagtccatgcattcatagtcata--tgaggtgatcttgaagtatataaatgcggggtgattattacatagcttctg 9128852  T
Q  283 cagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctaga 382  Q
    ||||||||| |||  |||||||||||||||||| ||||||||||||||||||||||||||  |||||| ||| |||||||||||||||||||||||||||    
T  9128853 cagagcataaatgtagggtgattattatgctggtggattcattaacggtaaaattatctccagaatccaatggtaccacatgcatctagaagagtctaga 9128952  T
Q  383 acatagcatgcattt 397  Q
    |||| | ||||||||    
T  9128953 acattgtatgcattt 9128967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 38 - 271
Target Start/End: Original strand, 20911716 - 20911951
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    |||||||| |||||||| ||||| ||||| || || |||||| ||||||||||||| ||||| ||| ||| |||||||||||||||||||||||||| |     
T  20911716 atgattatgatgttgattcttttagtgattataaagagatgatttaatgatgacttgttgattgtatggaagtaagtatttgataatgcaattgttggtg 20911815  T
Q  136 aataacataattcag-ggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaat 233  Q
    |||||||||| |  | ||||||  ||||| |||||||||||  |||||||| ||||||||| ||| ||||||||||||||||||||||||||||||  ||    
T  20911816 aataacataaatgcgaggtgataattatgctaatgtctatggtggtgaattgtgcattgtctagttcttacttgaagtccatgcattcatagtcat--at 20911913  T
Q  234 gagttgatttgaagtatgtaaatgcggggtgtttatta 271  Q
    ||| ||||||||||||||||| || |||||||||||||    
T  20911914 gaggtgatttgaagtatgtaagtgtggggtgtttatta 20911951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 177 - 383
Target Start/End: Complemental strand, 16195865 - 16195661
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatag 276  Q
    ||||| ||||||| ||||||||||||||||||| | |||||||||||||||||   | |||||||||| || |||||| |  | | ||||||||||||||    
T  16195865 ggtgagttatgcaatgtcgagtccttacttgaacttcatgcattcatagtcattt-taagttgatttggagaatgtaa-tcagtgatgtttattacatag 16195768  T
Q  277 cttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctagaaga 375  Q
    |||||||| | | ||  || | | || |||||||| ||   |||||||||||||||||||||||   ||||||||| || ||||||||||||||||| ||    
T  16195767 cttctgcataacctaattg-gtgatgtttattatgttgacagattcattaacggtaaaattatcgtcggaatcctaatggtaccacatgcatctagatga 16195669  T
Q  376 gtctagaa 383  Q
    ||||||||    
T  16195668 gtctagaa 16195661  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 297 - 426
Target Start/End: Original strand, 20911939 - 20912068
Alignment:
Q  297 ggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    |||||| ||||||||  || ||||||| |||||||| |||||||||||||||||| |  ||||||||||||||||| ||| ||||||||| |||||| ||    
T  20911939 ggggtgtttattatgtcggtggattcagtaacggtataattatctctggaatcctcttgtaccacatgcatctagaggagactagaacattgcatgcctt 20912038  T
Q  397 tatctattggtgagtcgagtcttacttgat 426  Q
    |    ||||| |||||||||| ||||||||    
T  20912039 ttataattggagagtcgagtcgtacttgat 20912068  T

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Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 330 - 399
Target Start/End: Original strand, 8325422 - 8325491
Alignment:
Q  330 gtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttat 399  Q
    ||||||||||||  ||| |||||||  |||||||||||||||| ||||||||||||| |||| |||||||    
T  8325422 gtaaaattatcttcggactcctatggcaccacatgcatctagatgagtctagaacattgcatacatttat 8325491  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 326 - 396
Target Start/End: Original strand, 17151034 - 17151105
Alignment:
Q  326 aacggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    |||||| |||||||||| ||||||| || | ||||||||||||||| ||||||||| ||||| |||||||||    
T  17151034 aacggttaaattatctccggaatccaattggtaccacatgcatctaaaagagtctaaaacattgcatgcatt 17151105  T

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Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 6210574 - 6210615
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||| ||||||||||||||||||||||||| ||||||||||    
T  6210574 taccatatgcatctagaagagtctagaacattgcatgcattt 6210615  T

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Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11622031 - 11622084
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    ||||||||||||||||||||||| ||||||| || | |||||||||||||||||    
T  11622031 ggtgaattatgcattgtcgagtctttacttgaaaattcatgcattcatagtcat 11622084  T

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Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 12246515 - 12246474
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  12246515 taccgcatgcatctagaagagtctagaacattgcatgcattt 12246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 397
Target Start/End: Complemental strand, 13488014 - 13487797
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatag 276  Q
    ||||| || |||||||||||||| ||||||||||| |||||| ||||||||||   |||| || ||||||| |||| | || | |||||||  ||||| |    
T  13488014 ggtgagttgtgcattgtcgagtctttacttgaagttcatgcaatcatagtcat-gttgaggtgttttgaagaatgtcattg-gtggtgtttgatacattg 13487917  T
Q  277 cttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctagaaga 375  Q
    |||| ||||| | |  ||  | |||| |||||||| | | | ||||| | | |||||||||||||| ||| ||| | || |||||||||||| ||||||     
T  13487916 cttcagcagaacgt-tattggtggtgtttattatgttcgtgcattcaat-atggtaaaattatctccggagtccaattggtaccacatgcatgtagaagt 13487819  T
Q  376 gtctagaacatagcatgcattt 397  Q
    ||||||||||| ||||||||||    
T  13487818 gtctagaacattgcatgcattt 13487797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 14252963 - 14253004
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  14252963 taccgcatgcatctagaagagtctagaacattgcatgcattt 14253004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 14278127 - 14278168
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||| |||||||||||||||||| ||||||||||    
T  14278127 taccacatgcatttagaagagtctagaacattgcatgcattt 14278168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 177 - 230
Target Start/End: Complemental strand, 26427340 - 26427287
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcata 230  Q
    ||||| || |||||||||||||| |||||| ||||| |||||||||||||||||    
T  26427340 ggtgatttgtgcattgtcgagtctttacttaaagtctatgcattcatagtcata 26427287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 39293370 - 39293411
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  39293370 taccgcatgcatctagaagagtctagaacattgcatgcattt 39293411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 45148124 - 45148083
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  45148124 taccgcatgcatctagaagagtctagaacattgcatgcattt 45148083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 354 - 397
Target Start/End: Complemental strand, 13460883 - 13460840
Alignment:
Q  354 gataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||| |||||||||||||||||||||||||| |||| |||||    
T  13460883 gataccgcatgcatctagaagagtctagaacattgcatacattt 13460840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 26427188 - 26427122
Alignment:
Q  329 ggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    |||||||||||||  ||||||| || | |||||| ||||| |||||||||||||||||| |||||||    
T  26427188 ggtaaaattatcttcggaatccaattggtaccacgtgcatttagaagagtctagaacattgcatgca 26427122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 14974189 - 14974230
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||| |||||||||||| ||| ||||||    
T  14974189 taccacatgcatctagaatagtctagaacattgcaagcattt 14974230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15403665 - 15403706
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||| |||||||||||| ||| ||||||    
T  15403665 taccacatgcatctagaatagtctagaacattgcaagcattt 15403706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 16065098 - 16065057
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||||| |||||||||| ||||| ||||    
T  16065098 taccacatgcatctagaagattctagaacattgcatgaattt 16065057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 19066155 - 19066114
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  19066155 taccgcatgcatctagaagagtctagaacattgcatgtattt 19066114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 21500896 - 21500933
Alignment:
Q  187 gcattgtcgagtccttacttgaagtccatgcattcata 224  Q
    |||||||||||||| ||||||||||||||| |||||||    
T  21500896 gcattgtcgagtccatacttgaagtccatgtattcata 21500933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 33291399 - 33291448
Alignment:
Q  181 aattatgcattgtcgagtccttacttga-agtccatgcattcatagtcat 229  Q
    ||||||||||||||||||| |||| ||| |||| ||||||||||||||||    
T  33291399 aattatgcattgtcgagtctttacgtgatagtcgatgcattcatagtcat 33291448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 44306900 - 44306941
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  44306900 taccacatgcatgtagaagagtctagaatattgcatgcattt 44306941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 11227664 - 11227624
Alignment:
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcat 223  Q
    ||||||||||||||||   ||||||||||||||||||||||    
T  11227664 ttatgcattgtcgagtttatacttgaagtccatgcattcat 11227624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 223
Target Start/End: Complemental strand, 16093547 - 16093507
Alignment:
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcat 223  Q
    ||||||||| ||||||| ||||||||||| |||||||||||    
T  16093547 ttatgcattatcgagtctttacttgaagttcatgcattcat 16093507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 229
Target Start/End: Complemental strand, 16175342 - 16175298
Alignment:
Q  186 tgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    |||||||||||||| ||||||| |||| |||||||||||||||||    
T  16175342 tgcattgtcgagtctttacttggaagttcatgcattcatagtcat 16175298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 172; Significance: 3e-92; HSPs: 29)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 38 - 395
Target Start/End: Complemental strand, 13438916 - 13438556
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    |||||||| |||||  | ||||||| ||| || ||||||||| ||||| |||||||||||||  || ||||||||||||||||||||| |||||||| |     
T  13438916 atgattatgatgttatttcttttggcgattataaatagatgatttaataatgacttattgattttatggatgtaagtatttgataatgtaattgttggtg 13438817  T
Q  136 aataacataattcagggt-gattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaat 233  Q
    |||||||||| |  |||| |||| |||||||||||||||||  |||||||||| ||||||  |||||||||||||||||||||||||||||||||||  |    
T  13438816 aataacataaatgtgggttgattattatgttaatgtctatggtggtgaattattcattgtttagtccttacttgaagtccatgcattcatagtcata--t 13438719  T
Q  234 gagttgat-ttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggta 332  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||| |||||  |||| |||| ||||||||||||| | |   ||||||| |||||||    
T  13438718 gagttgatcttgaagtatgtaaatgcggggtgattattacatagcttatgcaggacataaatgcagggtgattattattccgattgattcatcaacggta 13438619  T
Q  333 aaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcat 395  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||    
T  13438618 aaattatctctggaatcctatggtaccacatgcatctagaagagtctagaacattgcatgcat 13438556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 74 - 426
Target Start/End: Complemental strand, 10725295 - 10724952
Alignment:
Q  74 gatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaa-ttgttg-taaataacataattcagggtgattgttatgttaatgtc 171  Q
    ||||||||||||||||||| ||||| ||| ||||| |||||||||||||||||| |||||| | ||||||||||||   ||||||| |||||||||||||    
T  10725295 gatgaattaatgatgacttgttgattgtatggatggaagtatttgataatgcaaattgttggtgaataacataattggtggtgatttttatgttaatgtc 10725196  T
Q  172 tatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttatt 270  Q
    ||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||  | | || |||||||| ||| |||||||||||      
T  10725195 tatggtggtgagttatgcattgtcgagtccttacttgaagtccatgcattcatagtcat-aatgaagtaagtttaagtatgtgaattcggggtgttta-- 10725099  T
Q  271 acatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatcta 370  Q
            |||||||| |||| ||  | |||| |||||||| | | |||||| ||||||   ||||||||| || ||||||||| || || |||||||||    
T  10725098 --------tctgcagaacata-attggtggtgtttattatgttagtggattcgttaacgaagaaattatctttgaaatcctatggtatcaaatgcatcta 10725008  T
Q  371 gaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttgat 426  Q
    || |||||||||| || ||||| |||||||||||||||||||||||| ||||||||    
T  10725007 gatgagtctagaatattgcatgaatttatctattggtgagtcgagtcgtacttgat 10724952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 83 - 391
Target Start/End: Original strand, 12254141 - 12254451
Alignment:
Q  83 atgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataatt-cagggtgattgttatgttaatgtct-atga-gg 178  Q
    |||||||||| ||||| ||| | ||||||| ||||||||||| |||||||| | |||||||||| | | ||||||||   |||||||||| | |||  ||    
T  12254141 atgatgacttgttgattgtatgaatgtaagaatttgataatgaaattgttggtgaataacataaatgcggggtgattaccatgttaatgttttatggtgg 12254240  T
Q  179 tgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgat-ttgaagtatgtaaatgcggggtgtttattacatagc 277  Q
    | |||||||||||||||| |||||||||||| | ||||||||||||||||||  |||| |||| ||||||||||||| ||||||||| ||||||||||||    
T  12254241 ttaattatgcattgtcgattccttacttgaaattcatgcattcatagtcata--tgaggtgatcttgaagtatgtaactgcggggtgattattacatagc 12254338  T
Q  278 ttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagt 377  Q
    || |||||  |||| |||||||||| ||||||||  || ||||  || ||||||||||||||||| ||||||||||| |||||||||||| |||||||||    
T  12254339 ttatgcaggacataaatgcggggtggttattatgtcggtggatgtat-aacggtaaaattatctccggaatcctatggtaccacatgcatttagaagagt 12254437  T
Q  378 ctagaacatagcat 391  Q
    ||||||||| ||||    
T  12254438 ctagaacattgcat 12254451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 83 - 392
Target Start/End: Complemental strand, 8023069 - 8022757
Alignment:
Q  83 atgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggt-gattgttatgttaatgtctatgaggt- 179  Q
    |||||||||| ||||| ||| |||||||||||||||||||||||||||||| | |||||||||| |  |||| |||| |||||||| ||| | ||| ||     
T  8023069 atgatgacttgttgattgtatggatgtaagtatttgataatgcaattgttggtgaataacataaatgcgggttgattattatgtta-tgtatgtgaagtt 8022971  T
Q  180 gaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaa--atgcggggtgtttattacatagc 277  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||   |||| |||||||||||||||||  || |||| ||   ||||||||||    
T  8022970 gaattgtgcattgtcgagtccctacttgaagtccatgcattcatagtcat--gtgaggtgatttgaagtatgtaattatacgggttgacaattacatagc 8022873  T
Q  278 ttctgcagagcatagatgcggggtg-attattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagag 376  Q
    || ||||   |||| ||||| | || |||||||||   |  |||||||||||| |||||||||||| ||||||| ||| ||||||||||||||||||||     
T  8022872 ttttgcatgacataaatgcgagttgaattattatgtctgttgattcattaacgataaaattatctccggaatccaatggtaccacatgcatctagaagat 8022773  T
Q  377 tctagaacatagcatg 392  Q
    |||||||||| |||||    
T  8022772 tctagaacattgcatg 8022757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 186 - 394
Target Start/End: Complemental strand, 6809124 - 6808918
Alignment:
Q  186 tgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcag 285  Q
    |||||||||||||| |||| |||| ||||||||||||||||||||   ||| || ||||||| |||||| || | | |||||||||||||||||||||||    
T  6809124 tgcattgtcgagtctttacgtgaattccatgcattcatagtcatattcgaggtgttttgaagaatgtaattg-gtgatgtttattacatagcttctgcag 6809026  T
Q  286 agcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaac 384  Q
    | |||| ||| | | || |||||||| ||| ||||| | || |||||||||| ||||  |||||| || |||||||||||||||||||||||||||||||    
T  6809025 aacata-atgggtgatgtttattatgttggtggatttaata-cggtaaaattttctcaagaatccaattgataccacatgcatctagaagagtctagaac 6808928  T
Q  385 atagcatgca 394  Q
    || |||||||    
T  6808927 attgcatgca 6808918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 178 - 417
Target Start/End: Original strand, 19633259 - 19633496
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtca-taaatgagttgatttgaagtatgtaaatgcggggtgtttattacatag 276  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||| | || ||    |||| ||| |||||| || | | ||||||||||||||    
T  19633259 gtgagttatgcattgtcgagtccttacttgaagtcaatgcattcatagtcacttaaggaa---attttaagaatgtaattg-gtgatgtttattacatag 19633354  T
Q  277 cttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcct-atgataccacatgcatctagaaga 375  Q
    ||||||||||  |||  || | | |  |||||||| ||| |||||||||||||||||||||||||| |||||||| ||| | | || |||||||||| ||    
T  19633355 cttctgcagaatataattg-gtgatatttattatgttggtggattcattaacggtaaaattatctccggaatcctaatggtgcgacgtgcatctagatga 19633453  T
Q  376 gtctagaacatagcatgcat-ttatctattggtgagtcgagtc 417  Q
    ||||||||||| |||||||| | ||  ||||||||||||||||    
T  19633454 gtctagaacattgcatgcatatgattcattggtgagtcgagtc 19633496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 320 - 425
Target Start/End: Original strand, 8853513 - 8853618
Alignment:
Q  320 ttcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtctt 419  Q
    |||||||||||||||||||||||  |||||||||| || ||||| |||||||| ||||||||||||| |||||||||||   |||||||||||||||| |    
T  8853513 ttcattaacggtaaaattatctccagaatcctatggtatcacatacatctagatgagtctagaacattgcatgcatttaataattggtgagtcgagtcat 8853612  T
Q  420 acttga 425  Q
    ||||||    
T  8853613 acttga 8853618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 83 - 397
Target Start/End: Original strand, 2547791 - 2548105
Alignment:
Q  83 atgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatgaggtga 181  Q
    |||||||||| ||||| ||| |||||||| ||||||||||| ||| | ||| | || || |||||||  | ||||| |||||||||| |   |  |||||    
T  2547791 atgatgacttgttgattgtatggatgtaaatatttgataatacaaatattggtgaaaaatataattcgtgatgattattatgttaatatagttt-ggtga 2547889  T
Q  182 attatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttct 281  Q
     || | ||||||| |||||||||||||||| |||||||||||| |||||  |||| |||||||||| |  ||| || | | |||||||||||||| ||||    
T  2547890 gttgttcattgtcaagtccttacttgaagttcatgcattcataatcatat-tgaggtgatttgaagaacataattg-gtgatgtttattacatagtttct 2547987  T
Q  282 gcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcct-atgataccacatgcatct--agaagagtc 378  Q
    ||| | ||||  || | | || |||||||| ||| | |||||||||||||||||||||||  |||||||| ||| ||||||||||||||  ||||||||     
T  2547988 gcaaaacataattg-gtgatgtttattatgttggtgtattcattaacggtaaaattatcttcggaatcctaatggtaccacatgcatctagagaagagta 2548086  T
Q  379 tagaacatagcatgcattt 397  Q
    |||||||| |||| |||||    
T  2548087 tagaacattgcatacattt 2548105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 308 - 416
Target Start/End: Original strand, 16220307 - 16220415
Alignment:
Q  308 tatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggt 407  Q
    |||| ||| |||||||||||| |||||||||||||   ||||| ||| |||||||||||||||||  |||||| ||||| |||||||||||   ||||||    
T  16220307 tatgttggtggattcattaacagtaaaattatctccataatcccatggtaccacatgcatctagataagtctaaaacattgcatgcatttaataattggt 16220406  T
Q  408 gagtcgagt 416  Q
    |||||||||    
T  16220407 gagtcgagt 16220415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 16220071 - 16220167
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg 133  Q
    |||||||| ||| ||||  |||||||||| || ||| ||||||||||||||||||||||||| ||| | |||||||||||| ||||| ||| |||||    
T  16220071 atgattatgatgatgattattttggtgattataaattgatgaattaatgatgacttattgattgtatgaatgtaagtattttataattcaaatgttg 16220167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 11401120 - 11401079
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  11401120 taccacatgcatctagaagagtctagaacattgcatgcattt 11401079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 17385392 - 17385351
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  17385392 taccacatgcatctagaagagtctagaacattgcatgcattt 17385351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 54040207 - 54040248
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  54040207 taccacatgcatctagaagagtctagaacattgcatgcattt 54040248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 54049494 - 54049535
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  54049494 taccacatgcatctagaagagtctagaacattgcatgcattt 54049535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 17385559 - 17385507
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcat 229  Q
    ||||| || |||||||||||||| |||||| ||||||||||||||||||||||    
T  17385559 ggtgacttgtgcattgtcgagtctttactttaagtccatgcattcatagtcat 17385507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 21094218 - 21094286
Alignment:
Q  327 acggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    |||||||||||||||| ||||||| || | |||||||||||| |||||| ||||||||||| |||||||    
T  21094218 acggtaaaattatctccggaatccaattggtaccacatgcatgtagaagtgtctagaacattgcatgca 21094286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 356 - 398
Target Start/End: Original strand, 31413910 - 31413952
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattta 398  Q
    |||| |||||||||||||||||||||||||| |||||||||||    
T  31413910 taccgcatgcatctagaagagtctagaacattgcatgcattta 31413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15551127 - 15551168
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  15551127 taccgcatgcatctagaagagtctagaacattgcatgcattt 15551168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 17391881 - 17391840
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  17391881 taccacatgcatctagaagagtcttgaacattgcatgcattt 17391840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 394
Target Start/End: Original strand, 19978361 - 19978429
Alignment:
Q  327 acggtaaaattatctctggaatcc-tatgataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    |||||||||||||||| | ||||| | || |||||||||||||||| ||||||||||| || |||||||    
T  19978361 acggtaaaattatctccgcaatccatttggtaccacatgcatctaggagagtctagaatattgcatgca 19978429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Complemental strand, 8603209 - 8603174
Alignment:
Q  362 atgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||| ||||||||||    
T  8603209 atgcatctagaagagtctagaacattgcatgcattt 8603174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 386
Target Start/End: Complemental strand, 21765337 - 21765307
Alignment:
Q  356 taccacatgcatctagaagagtctagaacat 386  Q
    |||||||||||||||||||||||||||||||    
T  21765337 taccacatgcatctagaagagtctagaacat 21765307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 25606936 - 25606974
Alignment:
Q  358 ccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  25606936 ccacatgcatctagaggagtctagaacattgcatgcatt 25606974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 327 - 413
Target Start/End: Complemental strand, 27050309 - 27050223
Alignment:
Q  327 acggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 413  Q
    ||||||| ||||| |  ||||||| ||| ||| |||||||||||||| ||| |||||||| |||||||||| |   |||||||||||    
T  27050309 acggtaagattattttcggaatccaatggtactacatgcatctagaatagtatagaacattgcatgcatttgttagttggtgagtcg 27050223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 9637725 - 9637766
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||| |||||||||||||||||||  |||||||||    
T  9637725 taccacatgcagctagaagagtctagaacattacatgcattt 9637766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 10711464 - 10711509
Alignment:
Q  186 tgcattgtcgagtccttacttg-aagtccatgcattcatagtcata 230  Q
    |||||||||||||| ||||||| |||||||||||||||| ||||||    
T  10711464 tgcattgtcgagtctttacttgaaagtccatgcattcattgtcata 10711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 17760066 - 17760107
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  17760066 taccgcatgcatcaagaagagtctagaacattgcatgcattt 17760107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 19061386 - 19061427
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||| ||||||||||||||||| ||||||||||    
T  19061386 taccgcatgcatcaagaagagtctagaacattgcatgcattt 19061427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 25105584 - 25105625
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||| ||||| ||||||||||||| ||||||||||    
T  25105584 taccacatgcacctagaggagtctagaacattgcatgcattt 25105625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 143; Significance: 6e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 104 - 420
Target Start/End: Original strand, 21198989 - 21199304
Alignment:
Q  104 ggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatgaggtgaattatgcattgtcgagtcctt 202  Q
    |||||||||||||||||||||||||||||| | |||||||||| |  ||| |||| ||||||||||||||  | |||||| |||||||||||||||||||    
T  21198989 ggatgtaagtatttgataatgcaattgttggtgaataacataaatgcgggggattattatgttaatgtcttggtggtgaaatatgcattgtcgagtcctt 21199088  T
Q  203 acttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtg 302  Q
    ||||||||| |||| ||||||||||||  ||||||| ||||||||||||||||||||| ||| |||||||||||||| |||||   ||| |||  |||||    
T  21199089 acttgaagttcatgtattcatagtcat--atgagttaatttgaagtatgtaaatgcggagtgattattacatagcttatgcaggatataaatgtcgggtg 21199186  T
Q  303 attattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatcta 402  Q
    ||| || ||  || ||||||||||||||||||||||||||  ||||  || | ||||||||||||||||| ||||||||||||| |||||||||||        
T  21199187 attgttttgtcggtggattcattaacggtaaaattatctccagaatggtagggtaccacatgcatctagacgagtctagaacattgcatgcatttaatat 21199286  T
Q  403 ttggtgagtcgagtctta 420  Q
    ||||||||||||||||||    
T  21199287 ttggtgagtcgagtctta 21199304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 20252739 - 20252698
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  20252739 taccgcatgcatctagaagagtctagaacattgcatgcattt 20252698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 33395881 - 33395840
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  33395881 taccgcatgcatctagaagagtctagaacattgcatgcattt 33395840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 70 - 412
Target Start/End: Complemental strand, 24623636 - 24623295
Alignment:
Q  70 aatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaat 168  Q
    |||| ||||||| |||||||||| ||| | ||| |||||||||||||||||||||||| ||||| | ||||||||||||   ||||||| ||||||||||    
T  24623636 aataaatgaattgatgatgacttgttgtttgtatggatgtaagtatttgataatgcaactgttggtgaataacataattggtggtgattattatgttaat 24623537  T
Q  169 gtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgttt 267  Q
    || || |  ||||| ||||||||||||||||||||||||||||||| ||||||||||||||| | |||| |||||||||| |||||| || | |||||||    
T  24623536 gtttacgttggtgagttatgcattgtcgagtccttacttgaagtccttgcattcatagtcat-attgaggtgatttgaagaatgtaattg-gtggtgttt 24623439  T
Q  268 attacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcat 367  Q
    |||||||||||||| |||| |||| ||  | | |  |||||||| | | ||||||||||| |||||||||||||| ||||||| ||| ||||||||||||    
T  24623438 attacatagcttctacagaacata-attggtgatatttattatgttagtggattcattaagggtaaaattatctccggaatccaatggtaccacatgcat 24623340  T
Q  368 ctagaagagtctagaacatagcatgcatttatctattggtgagtc 412  Q
    |||||||||| |||||||| ||||||||||||   ||||||||||    
T  24623339 ctagaagagtttagaacattgcatgcatttattatttggtgagtc 24623295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 89 - 423
Target Start/End: Complemental strand, 25262161 - 25261828
Alignment:
Q  89 acttattgatcgtaaggatgtaagtatttgataatgcaattgttgtaaataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatg 187  Q
    |||||||||| ||| ||||||||||||||||||||| || |||||   | |||||||||   | | ||| |||||||||| | ||||  ||||| |||||    
T  25262161 acttattgattgtatggatgtaagtatttgataatgtaaatgttggtgaaaacataattggtgattattattatgttaatatatatgttggtgagttatg 25262062  T
Q  188 cattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagag 287  Q
    |||| |||||||||||||||||||||||||||||||||||||   |||| |||||||||| |||||| |  | | | |||| ||| ||| |||||||||     
T  25262061 cattatcgagtccttacttgaagtccatgcattcatagtcattt-tgaggtgatttgaagaatgtaatta-gtgatatttaatacttagtttctgcagaa 25261964  T
Q  288 catagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacat 386  Q
    ||||  || | | || |||||||| ||| ||||||||||| |||||||| |||| |  |||||||| | |||||||||||||||||||||||||||||||    
T  25261963 cataattg-gtgatgtttattatgttggtggattcattaatggtaaaatcatctttcaaatcctattggtaccacatgcatctagaagagtctagaacat 25261865  T
Q  387 agcatgcatttatctattggtgagtcgagtcttactt 423  Q
      |||||| || |  |||||||||||| ||| |||||    
T  25261864 tacatgcacttgttaattggtgagtcgtgtcatactt 25261828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 267 - 417
Target Start/End: Original strand, 23543734 - 23543884
Alignment:
Q  267 tattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgca 366  Q
    ||||||||| ||||| ||   |||| ||||||| || ||||||||   | ||||||||||||||| |||||||||| | ||||||||| || ||||||||    
T  23543734 tattacataacttctacaagacataaatgcgggttggttattatgtccgtggattcattaacggtcaaattatctccgaaatcctatggtatcacatgca 23543833  T
Q  367 tctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtc 417  Q
    |||||||||||||||||||| ||||||| ||||  ||||||||||||||||    
T  23543834 tctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtc 23543884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 38 - 192
Target Start/End: Complemental strand, 18179184 - 18179027
Alignment:
Q  38 atgattatcatgttgatacttttggtga-tatgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgtt-gta 135  Q
    ||||||||  ||||||| |||||| ||| ||| |||| ||||||| |||||||||| ||||| ||| ||||||||||||||||||||||||||||| ||     
T  18179184 atgattatggtgttgattcttttgatgactataaataaatgaattgatgatgacttgttgattgtatggatgtaagtatttgataatgcaattgttggtg 18179085  T
Q  136 aataacataattcagggtgattgttatgttaatgtctatg-aggtgaattatgcattg 192  Q
    ||||||||| ||   | |||||||||||||||||||||||  ||||| ||||||||||    
T  18179084 aataacatagttggtgatgattgttatgttaatgtctatgttggtgagttatgcattg 18179027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 57 - 284
Target Start/End: Complemental strand, 18827154 - 18826929
Alignment:
Q  57 ttttggtgatatgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtga 155  Q
    |||||||||| | | | ||||||||  ||||||||| ||||| ||| || | ||| |||||||||||| |||||||| | ||||||||||||    ||||    
T  18827154 ttttggtgatttaatttgatgaattggtgatgacttgttgattgtacggtt-taattatttgataatgtaattgttggtgaataacataattggtagtga 18827056  T
Q  156 ttgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaa 254  Q
    || |||||||||||||||||  ||||| ||||||||||||||||| | |||||||||||||||||||||  |||| | | || |||||||||| |||| |    
T  18827055 ttattatgttaatgtctatgttggtgagttatgcattgtcgagtcat-acttgaagtccatgcattcattttcat-atttaggtgatttgaagaatgt-a 18826959  T
Q  255 atgcggggtgtttattacatagcttctgca 284  Q
    ||  | ||||||||| ||||||||||||||    
T  18826958 atttgtggtgtttatcacatagcttctgca 18826929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 18032927 - 18032829
Alignment:
Q  326 aacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttg 424  Q
    |||||||||||||||||| |||||  ||| ||||||||||||||||| ||||||||||||| ||| |||||| |  |||||||||||||| | ||||||    
T  18032927 aacggtaaaattatctcttgaatctaatggtaccacatgcatctagatgagtctagaacattgcacgcatttgttaattggtgagtcgagccatacttg 18032829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 38 - 133
Target Start/End: Original strand, 23543603 - 23543708
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgta-ag--------gatgtaagtatttgataatgcaa 127  Q
    |||||||| |||||||| ||||||||||| || |||||||||||| |||||||||||||||| ||| ||        |||||||||||||||||||||||    
T  23543603 atgattatgatgttgattcttttggtgattataaatagatgaatttatgatgacttattgattgtatagattgtatcgatgtaagtatttgataatgcaa 23543702  T
Q  128 ttgttg 133  Q
    ||||||    
T  23543703 ttgttg 23543708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 31195906 - 31195947
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  31195906 taccacatgcatctagaagagtctagaacattgcatgcattt 31195947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 15550308 - 15550360
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    |||||||||||||| ||||||| ||||||| ||||||||||||||||||||||    
T  15550308 gtgaattatgcattctcgagtctttacttgaaagtccatgcattcatagtcat 15550360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 224
Target Start/End: Original strand, 15662368 - 15662414
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttgaagtccatgcattcata 224  Q
    |||| ||||||||||||||||| ||||||||||| ||||||||||||    
T  15662368 gtgagttatgcattgtcgagtctttacttgaagttcatgcattcata 15662414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 16041166 - 16041207
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  16041166 taccgcatgcatctagaagagtctagaacattgcatgcattt 16041207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 16042842 - 16042883
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  16042842 taccgcatgcatctagaagagtctagaacattgcatgcattt 16042883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 17500559 - 17500518
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  17500559 taccgcatgcatctagaagagtctagaacattgcatgcattt 17500518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 18610801 - 18610760
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  18610801 taccgcatgcatctagaagagtctagaacattgcatgcattt 18610760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 25608683 - 25608642
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  25608683 taccgcatgcatctagaagagtctagaacattgcatgcattt 25608642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 356 - 396
Target Start/End: Complemental strand, 17265449 - 17265409
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  17265449 taccgcatgcatctagaagagtctagaacattgcatgcatt 17265409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 226
Target Start/End: Complemental strand, 16216602 - 16216552
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagt 226  Q
    ||||| || |||||||||||||| ||||||| |||||||||||||||||||    
T  16216602 ggtgatttgtgcattgtcgagtctttacttgaaagtccatgcattcatagt 16216552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 20177661 - 20177702
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  20177661 taccacatgcatgtagaagagtctagaatattgcatgcattt 20177702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 20222388 - 20222429
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||| ||||||||||||||| || ||||||||||    
T  20222388 taccacatgcatgtagaagagtctagaatattgcatgcattt 20222429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 28932876 - 28932831
Alignment:
Q  186 tgcattgtcgagtccttacttga-agtccatgcattcatagtcata 230  Q
    |||||||||||||| |||||||| |||||||||||||||| |||||    
T  28932876 tgcattgtcgagtctttacttgagagtccatgcattcataatcata 28932831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 5e-63; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 85 - 399
Target Start/End: Complemental strand, 12975341 - 12975026
Alignment:
Q  85 gatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatgag-gtgaa 182  Q
    |||||||| ||||| ||| | |||||||||||||||||||||||||||| | ||||||||||||   ||||||| ||||||||||||||| |   ||||     
T  12975341 gatgacttgttgattgtatgaatgtaagtatttgataatgcaattgttggtgaataacataattggtggtgattattatgttaatgtctaagttagtgag 12975242  T
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctg 282  Q
    ||||||||||||||||||||| ||||||||||||||||||||| |   |||||| |||||||||| |||||| ||   ||||||||||||||||||| ||    
T  12975241 ttatgcattgtcgagtccttatttgaagtccatgcattcatagcc--taatgaggtgatttgaagaatgtaattg-atggtgtttattacatagcttatg 12975145  T
Q  283 cagagcatagatgcggggtgattattatgctgga---ggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtct 379  Q
    |||| |||| ||    |||| |||||||| ||||   ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||    
T  12975144 cagaacata-attgatggtgtttattatgttggacgtggattcattaacggtaaaattatatctggaatcctatggtaccacatgcatctagaaatgtct 12975046  T
Q  380 agaacatagcatgcatttat 399  Q
    ||||||| |||| |||||||    
T  12975045 agaacattgcatacatttat 12975026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 38 - 376
Target Start/End: Complemental strand, 10973665 - 10973326
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgtt-gta 135  Q
    ||||||||  ||||||| |||||| |||| |||| || ||||||| |||||||||| ||||| ||| |  |||||||||||||||||||||||||| ||     
T  10973665 atgattatgttgttgattcttttgatgattatgattaaatgaattgatgatgacttgttgattgtatgattgtaagtatttgataatgcaattgttggtg 10973566  T
Q  136 aataacataattcagggtgattgttatgttaatgtctatg-aggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatg 234  Q
    ||||||||||||   ||||||| |||||||||||||||||  ||||| ||| |||||||| ||| ||||||||||| ||||||||||||||| || | ||    
T  10973565 aataacataattggtggtgattattatgttaatgtctatgttggtgagttaagcattgtcaagtacttacttgaaggccatgcattcatagtgat-attg 10973467  T
Q  235 agttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaa 334  Q
    || |||||||||| |||||| ||   ||||||| ||||||||||||| |||| |||| ||  | |||| |||||||| ||| ||||||||||||||||||    
T  10973466 aggtgatttgaagaatgtaactg-atggtgtttgttacatagcttctacagaacata-attggtggtgtttattatgttggtggattcattaacggtaaa 10973369  T
Q  335 a-ttatctctggaatcctatgataccacatgcatctagaagag 376  Q
    | ||||||| ||||||||||| |||||| ||||||||||||||    
T  10973368 atttatctccggaatcctatggtaccacgtgcatctagaagag 10973326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 38 - 419
Target Start/End: Original strand, 19728666 - 19729064
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    |||||||| |||||||| ||||  ||||| | || ||||||  || |||||||||| |||||  || |||||||||||||||||||| ||||||||| |     
T  19728666 atgattatgatgttgattctttcagtgattacgactagatggtttgatgatgacttgttgattatatggatgtaagtatttgataattcaattgttggtg 19728765  T
Q  136 aataacataattcagggt-gattgttatgttaatgtctatgaggt-gaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaat 233  Q
    |||||||||| | ||||| |||| ||||||||| || | ||| || ||||   ||||||| ||||||||||||||||| ||||||||||||||||||       
T  19728766 aataacataaatgagggttgattattatgttaaagtatgtgaagttgaatagcgcattgtggagtccttacttgaagttcatgcattcatagtcatac-- 19728863  T
Q  234 gagttgatttgaagtatgta---------------aatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggagg 318  Q
    |||  |||||||||||||||               ||||| || ||  |||||||||  |||| ||   |||| |||| || |||||||||||  |  ||    
T  19728864 gagccgatttgaagtatgtatatatgcgggttgaaaatgcaggttgactattacataatttctacaagacataaatgcaggttgattattatgtcgatgg 19728963  T
Q  319 attcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtct 418  Q
    ||||||||||||| |||| || ||||||||| |||| ||||||||||||||||||||||||||||||| ||||||| ||||  |||||||||||||||||    
T  19728964 attcattaacggtcaaatgatatctggaatcttatggtaccacatgcatctagaagagtctagaacattgcatgcacttattaattggtgagtcgagtct 19729063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 395
Target Start/End: Complemental strand, 23295959 - 23295742
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagc 277  Q
    |||| ||||||||||||||||||||||||||||||||||||||| |||||||  |  || |||||||||| |||||| || |   |||||||||||||||    
T  23295959 gtgagttatgcattgtcgagtccttacttgaagtccatgcattcgtagtcatttaa-aggtgatttgaagaatgtaattg-gtaatgtttattacatagc 23295862  T
Q  278 ttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcct-atgataccacatgcatct--agaag 374  Q
    ||||||||| ||||  ||  |  || |||| ||| ||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||  |||||    
T  23295861 ttctgcagaacataattgatga-tgtttatcatgttggtggattcattaacggtaaaattatctctggaatcctaatggtaccacatgcatctagagaag 23295763  T
Q  375 agtctagaacatagcatgcat 395  Q
    ||||||||||||  |||||||    
T  23295762 agtctagaacattacatgcat 23295742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 327 - 413
Target Start/End: Original strand, 5485934 - 5486020
Alignment:
Q  327 acggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 413  Q
    |||||||||||||||  ||||| | ||  ||||||||||| ||||||||| ||||||||| ||||||| ||||   |||||||||||    
T  5485934 acggtaaaattatcttaggaattcaattgtaccacatgcacctagaagagactagaacattgcatgcacttattatttggtgagtcg 5486020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 391
Target Start/End: Complemental strand, 24217421 - 24217359
Alignment:
Q  330 gtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcat 391  Q
    |||||||||||| | ||||||||| | |||||||||||| |||||||||||||||||| ||||    
T  24217421 gtaaaattatctatagaatcctattggtaccacatgcatttagaagagtctagaacattgcat 24217359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 12466180 - 12466221
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||| |||||||||||||||||||||| ||||||||||    
T  12466180 taccacatacatctagaagagtctagaacattgcatgcattt 12466221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 15482334 - 15482379
Alignment:
Q  186 tgcattgtcgagtccttacttgaa-gtccatgcattcatagtcata 230  Q
    |||||||||||||| ||||||||| |||||||||||||||||||||    
T  15482334 tgcattgtcgagtctttacttgaaagtccatgcattcatagtcata 15482379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 16374922 - 16374881
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  16374922 taccgcatgcatctagaagagtctagaacattgcatgcattt 16374881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 19627871 - 19627830
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  19627871 taccgcatgcatctagaagagtctagaacattgcatgcattt 19627830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 22595123 - 22595164
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  22595123 taccgcatgcatctagaagagtctagaacattgcatgcattt 22595164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 31162518 - 31162559
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  31162518 taccgcatgcatctagaagagtctagaacattgcatgcattt 31162559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 35010943 - 35010984
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  35010943 taccgcatgcatctagaagagtctagaacattgcatgcattt 35010984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 12466005 - 12466045
Alignment:
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcat 223  Q
    |||||| |||||||||| |||||||||||||||||||||||    
T  12466005 ttatgctttgtcgagtctttacttgaagtccatgcattcat 12466045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 22542105 - 22542053
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    |||||||||||||||||||||| |||||||  ||||||||||| |||||||||    
T  22542105 gtgaattatgcattgtcgagtctttacttgttagtccatgcatgcatagtcat 22542053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 11374489 - 11374524
Alignment:
Q  362 atgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11374489 atgcatctagaagagtctagaacattgcatgcattt 11374524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 397
Target Start/End: Original strand, 29162148 - 29162183
Alignment:
Q  362 atgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29162148 atgcatctagaagagtctagaacattgcatgcattt 29162183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 359 - 397
Target Start/End: Original strand, 17858014 - 17858052
Alignment:
Q  359 cacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||| |||||||||||||||||| ||||||||||    
T  17858014 cacatgcatttagaagagtctagaacattgcatgcattt 17858052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 17084982 - 17085023
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||||||||| |||||||||||| ||||||||||    
T  17084982 taccgcatgcatctagaaaagtctagaacattgcatgcattt 17085023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 13122255 - 13122307
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    |||||||||||||||||||||| |||  || |||||||||||||| |||||||    
T  13122255 gtgaattatgcattgtcgagtcgttatgtgaaagtccatgcattcgtagtcat 13122307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 7e-62; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 38 - 426
Target Start/End: Original strand, 19317789 - 19318194
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    |||||||| |||||||| ||||||||||| || |||| |||| || |||| ||||| ||||| ||| |||||||||||||||||||||||||||||| |     
T  19317789 atgattatgatgttgattcttttggtgattataaatatatgatttgatgaggacttgttgatagtatggatgtaagtatttgataatgcaattgttggtg 19317888  T
Q  136 aataacataattcagggt-gattgttatgttaatgtctatgaggtgaatta-tgcattgtcgagtccttacttgaagtccatgcattcatagtcataaat 233  Q
    |||||| ||| |  |||| |||| ||||||||| || | ||| || || || |||||||||||||||||||||||||||| ||||||||||||||||  |    
T  19317889 aataacttaaatgcgggttgattattatgttaaagtatgtgaagttaaatagtgcattgtcgagtccttacttgaagtccttgcattcatagtcata--t 19317986  T
Q  234 gagttgatttgaagtatgtaaa--tgcggggtg----------tt---tattacatagcttctgcagagcatagatgcggggtgattattatgctggagg 318  Q
    ||| ||||||||||||||||||  |||||| ||          ||   |||||||||| |||| | |  |||| ||| ||| |||||||||||  || ||    
T  19317987 gagatgatttgaagtatgtaaaaatgcgggttgaaaatgagggttgactattacatagtttctacgggacataaatgtgggttgattattatgtcggtgg 19318086  T
Q  319 attcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtct 418  Q
    |||||||||||||||||| ||||||| |||| |||| |||||||||||||||||||||||||||||||  |||||||||||   |||||||||||||||     
T  19318087 attcattaacggtaaaatcatctctgaaatcttatggtaccacatgcatctagaagagtctagaacattacatgcatttattatttggtgagtcgagtcg 19318186  T
Q  419 tacttgat 426  Q
    ||||||||    
T  19318187 tacttgat 19318194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 38 - 385
Target Start/End: Complemental strand, 19267243 - 19266891
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    ||||||||  ||||||| |||||| |||| ||||||| ||||||| |||||||||| ||||| ||| | |||||||||||||||||||||||||||| |     
T  19267243 atgattatggtgttgattcttttgatgattatgaataaatgaattgatgatgacttgttgattgtatgtatgtaagtatttgataatgcaattgttggtg 19267144  T
Q  136 aataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcat----- 229  Q
    ||||||||||||   ||||||| |||||| ||||| ||||  ||||| || ||||||||||||||||||||||||||||||||||||||||||||         
T  19267143 aataacataattggtggtgattattatgt-aatgtttatgttggtgagttgtgcattgtcgagtccttacttgaagtccatgcattcatagtcatgttga 19267045  T
Q  230 aaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacg 329  Q
       |||| |||||||||| |||||| || | |||||||||||||||||||||||| | |||| ||  | |||| |||||||| ||| ||||||| ||| |    
T  19267044 tgttgaggtgatttgaagaatgtaattg-gtggtgtttattacatagcttctgcataacata-attggtggtgtttattatgttggtggattca-taatg 19266948  T
Q  330 gt-aaaattatctctggaatcctatgataccacatgcatctagaagagtctagaaca 385  Q
    || |||||||||||  |||||||||| ||| ||||||||||||||||||||| ||||    
T  19266947 gtaaaaattatctccagaatcctatggtactacatgcatctagaagagtctacaaca 19266891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 304 - 424
Target Start/End: Complemental strand, 25341024 - 25340903
Alignment:
Q  304 ttattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctagaagagtctagaacatagcatgcatttatcta 402  Q
    |||||||| ||| |||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||| |||||||||| |  |    
T  25341024 ttattatgttggtggattcattaacggtaaaattatctctggaatcctaatggtaccacatgcatctagatgagtctagaacattgcatgcatttgttaa 25340925  T
Q  403 ttggtgagtcgagtcttacttg 424  Q
    ||||||||||||||| ||||||    
T  25340924 ttggtgagtcgagtcatacttg 25340903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 21298478 - 21298359
Alignment:
Q  112 gtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaa 209  Q
    |||| ||||||||||||||||| | ||||||||||||   ||||||| | |||||||||||||||  ||||| || ||||||||||||| ||||||||||    
T  21298478 gtatctgataatgcaattgttggtgaataacataattggtggtgattatcatgttaatgtctatgttggtgagttgtgcattgtcgagttcttacttgaa 21298379  T
Q  210 gtccatgcattcatagtcat 229  Q
    ||||||| ||| ||||||||    
T  21298378 gtccatgaatttatagtcat 21298359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 21304184 - 21304065
Alignment:
Q  112 gtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaa 209  Q
    |||| ||||||||||||||||| | ||||||||||||   ||||||| | |||||||||||||||  ||||| || ||||||||||||| ||||||||||    
T  21304184 gtatctgataatgcaattgttggtgaataacataattggtggtgattatcatgttaatgtctatgttggtgagttgtgcattgtcgagttcttacttgaa 21304085  T
Q  210 gtccatgcattcatagtcat 229  Q
    ||||||| ||| ||||||||    
T  21304084 gtccatgaatttatagtcat 21304065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 112 - 229
Target Start/End: Complemental strand, 21312021 - 21311902
Alignment:
Q  112 gtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaa 209  Q
    |||| ||||||||||||||||| | ||||||||||||   ||||||| | |||||||||||||||  ||||| || ||||||||||||| ||||||||||    
T  21312021 gtatctgataatgcaattgttggtgaataacataattggtggtgattatcatgttaatgtctatgttggtgagttgtgcattgtcgagttcttacttgaa 21311922  T
Q  210 gtccatgcattcatagtcat 229  Q
    ||||||| ||| ||||||||    
T  21311921 gtccatgaatttatagtcat 21311902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 14343508 - 14343549
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  14343508 taccacatgcatctagaagagtctggaacattgcatgcattt 14343549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 34937992 - 34937951
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  34937992 taccgcatgcatctagaagagtctagaacattgcatgcattt 34937951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 361 - 397
Target Start/End: Original strand, 16837014 - 16837050
Alignment:
Q  361 catgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||||||||||| ||||||||||    
T  16837014 catgcatctagaagagtctagaacattgcatgcattt 16837050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 327 - 394
Target Start/End: Complemental strand, 37275869 - 37275801
Alignment:
Q  327 acggtaaaattatctctggaatccta-tgataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    |||||||||||||||| ||||||| | || ||||||||| || |||||||| ||||||||| |||||||    
T  37275869 acggtaaaattatctccggaatccaattggtaccacatgtatttagaagagcctagaacattgcatgca 37275801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 352 - 395
Target Start/End: Complemental strand, 26058443 - 26058400
Alignment:
Q  352 atgataccacatgcatctagaagagtctagaacatagcatgcat 395  Q
    |||||||||||||||| |||| | ||||||||||||||||||||    
T  26058443 atgataccacatgcatgtagaggtgtctagaacatagcatgcat 26058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 18532420 - 18532458
Alignment:
Q  358 ccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  18532420 ccacatgcatctagaggagtctagaacattgcatgcatt 18532458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 22055384 - 22055422
Alignment:
Q  358 ccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  22055384 ccacatgcatctagaggagtctagaacattgcatgcatt 22055422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 229
Target Start/End: Complemental strand, 37278276 - 37278239
Alignment:
Q  191 tgtcgagtccttacttgaagtccatgcattcatagtcat 229  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  37278276 tgtcgagtc-ttacttgaagtccatgcattcatagtcat 37278239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 11765053 - 11765094
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  11765053 taccgcatgcatctagaagagtctagaacatttcatgcattt 11765094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Complemental strand, 19049594 - 19049553
Alignment:
Q  186 tgcattgtcgagtccttacttgaagtccatgcattcatagtc 227  Q
    ||||||||||||||  |||| |||||||||||||||||||||    
T  19049594 tgcattgtcgagtctatactagaagtccatgcattcatagtc 19049553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 394
Target Start/End: Complemental strand, 37278137 - 37278072
Alignment:
Q  330 gtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    ||||||||||||| ||||||| || | |||||| || ||||| ||||||||||||||| |||||||    
T  37278137 gtaaaattatctccggaatccaattggtaccacgtgtatctaaaagagtctagaacattgcatgca 37278072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 101; Significance: 6e-50; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 108 - 394
Target Start/End: Complemental strand, 22576825 - 22576541
Alignment:
Q  108 gtaagtatttgataatgcaattgttg-taaataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttact 205  Q
    |||||||||||||||| ||||||||| | ||||||||||||     ||||| ||||||||||| |||||  ||||| || |||||||| |||||||||||    
T  22576825 gtaagtatttgataattcaattgttggtgaataacataattagtaatgattattatgttaatgcctatgttggtgacttgtgcattgttgagtccttact 22576726  T
Q  206 tgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgatt 305  Q
    |||||| ||||||||||||||||||  |||| |||||||||| ||||||  | | |||||||||||||||||||||||||| ||||  || | |||| ||    
T  22576725 tgaagttcatgcattcatagtcatat-tgaggtgatttgaagaatgtaatag-gtggtgtttattacatagcttctgcagaacataattg-gtggtgttt 22576629  T
Q  306 attatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgca 394  Q
    || ||| ||| |||||||| ||||||||||||||||  |||| ||| || ||||||||||||||| ||||||||||||||| |||||||    
T  22576628 atcatgttggtggattcat-aacggtaaaattatcttcggaaccctttggtaccacatgcatctaaaagagtctagaacattgcatgca 22576541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 152 - 396
Target Start/End: Complemental strand, 18995007 - 18994764
Alignment:
Q  152 gtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtat 250  Q
    |||||| ||||| |||||| ||||  ||||| ||||||||||||||| ||||||||||||| ||| ||||||||||||| | |||| |||||||||| ||    
T  18995007 gtgattattatgataatgtatatgttggtgagttatgcattgtcgaggccttacttgaagtacatacattcatagtcat-attgaggtgatttgaagaat 18994909  T
Q  251 gtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaa-ttatctctggaatc 349  Q
    |||| || | |||| ||||||||||||||||||||| |||| ||  |  ||| |||||||| |||  ||||||||||| |||||| ||||||| ||||||    
T  18994908 gtaattg-gtggtgcttattacatagcttctgcagaacata-attggtagtgtttattatgttggtagattcattaactgtaaaatttatctccggaatc 18994811  T
Q  350 ctatgataccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
     |||| ||||||||||||||||||||||||||| ||| |||| ||||    
T  18994810 atatggtaccacatgcatctagaagagtctagagcattgcatacatt 18994764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 24533276 - 24533341
Alignment:
Q  355 ataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtctta 420  Q
    |||||||||||||||||| ||||||||||||| |||| ||||||   |||| ||||||||||||||    
T  24533276 ataccacatgcatctagatgagtctagaacattgcatccatttaataattgatgagtcgagtctta 24533341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 28579344 - 28579396
Alignment:
Q  178 gtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    ||||||||| |||||||||||| ||||||| ||||||||||||||||||||||    
T  28579344 gtgaattattcattgtcgagtctttacttggaagtccatgcattcatagtcat 28579396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 7513682 - 7513723
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  7513682 taccgcatgcatctagaagagtctagaacattgcatgcattt 7513723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 22331207 - 22331166
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  22331207 taccgcatgcatctagaagagtctagaacattgcatgcattt 22331166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 42180029 - 42180070
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  42180029 taccgcatgcatctagaagagtctagaacattgcatgcattt 42180070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 45619700 - 45619741
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  45619700 taccgcatgcatctagaagagtctagaacattgcatgcattt 45619741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 23154430 - 23154501
Alignment:
Q  327 acggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||| ||||| | || |||||||||| ||| |||||| || |||||||| ||||||||||    
T  23154430 acggtaaaattatctccggaattcaattgataccacatacatatagaagtgtttagaacattgcatgcattt 23154501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Original strand, 23565687 - 23565758
Alignment:
Q  327 acggtaaaattatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||| ||||| | || |||||||||| ||| |||||| || |||||||| ||||||||||    
T  23565687 acggtaaaattatctccggaattcaattgataccacatacatatagaagtgtttagaacattgcatgcattt 23565758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 185 - 223
Target Start/End: Complemental strand, 21653019 - 21652981
Alignment:
Q  185 atgcattgtcgagtccttacttgaagtccatgcattcat 223  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  21653019 atgcattgtcgagtcattacttgaagtcaatgcattcat 21652981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 24342999 - 24343037
Alignment:
Q  358 ccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  24342999 ccacatgcatctagaggagtctagaacattgcatgcatt 24343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 18331808 - 18331861
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    ||||| || |||||||||||||| ||||||| |||||||||||| |||||||||    
T  18331808 ggtgatttgtgcattgtcgagtctttacttgaaagtccatgcatccatagtcat 18331861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0508 (Bit Score: 100; Significance: 3e-49; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 245 - 420
Target Start/End: Complemental strand, 6002 - 5827
Alignment:
Q  245 aagtatgtaaatgcggggtgtttattacatagcttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctg 344  Q
    |||||||||||||||||||| ||||||||||||||||||||  |||| ||| |||||||||||||||  || ||||||||||||| |||||| ||||| |    
T  6002 aagtatgtaaatgcggggtgattattacatagcttctgcaggacataaatgtggggtgattattatgtcggtggattcattaacgataaaatcatctccg 5903  T
Q  345 gaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtctta 420  Q
    |||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||   || |||||| ||||||||    
T  5902 gaatcctatggtaccacatgcatctagaagggtctagaacattgcatgcatttattatttagtgagttgagtctta 5827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: scaffold0412
Description:

Target: scaffold0412; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 38 - 286
Target Start/End: Complemental strand, 2004 - 1755
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    ||||||||  ||||||| |||||| |||| | ||| | ||||||| |||||||||| || || ||| ||||| |||||||||||||| ||||||||| |     
T  2004 atgattatggtgttgattcttttgatgattaggaaaaaatgaattgatgatgacttgtttattgtatggatgcaagtatttgataatacaattgttggtg 1905  T
Q  136 aataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatg 234  Q
    ||||||||| ||   ||||||| |||||||||| ||||||  ||||| || |||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  1904 aataacatagttggtggtgattattatgttaatatctatgttggtgagttctgcattgtcgagtccttacttgaagttcatgcattcatagtcat-aatg 1806  T
Q  235 agttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgcaga 286  Q
    || |||||| ||| |||||| || | ||||||||||||||| ||||||||||    
T  1805 aggtgatttcaagaatgtaattg-gtggtgtttattacataacttctgcaga 1755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0412; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 330 - 386
Target Start/End: Complemental strand, 1751 - 1695
Alignment:
Q  330 gtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacat 386  Q
    ||||||| ||||||||||||||||| |||||||||||||||||||||||| ||||||    
T  1751 gtaaaatcatctctggaatcctatggtaccacatgcatctagaagagtcttgaacat 1695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 81; Significance: 5e-38; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 184 - 423
Target Start/End: Original strand, 100940 - 101177
Alignment:
Q  184 tatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgc 283  Q
    ||||||||||| |||||||| ||||||| |||||||||||||||||   | || |||||||||| |||||| || | | | |||||||||| ||||||||    
T  100940 tatgcattgtcaagtccttaattgaagttcatgcattcatagtcattt-taaggtgatttgaagaatgtaattg-gagatatttattacatggcttctgc 101037  T
Q  284 agagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctagaagagtctaga 382  Q
    ||| ||||  || | | || |||||||| ||| ||||||||||| | ||||||||||||  |||||||| || ||||||||||||||||| |||||||||    
T  101038 agaacataattg-gtgatgtttattatgttggtggattcattaatgataaaattatctcctgaatcctaatggtaccacatgcatctagatgagtctaga 101136  T
Q  383 acatagcatgcatttatctattggtgagtcgagtcttactt 423  Q
    |||| ||||||||||||  |||||| ||||||||| |||||    
T  101137 acattgcatgcatttattaattggtaagtcgagtcatactt 101177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Original strand, 100839 - 100885
Alignment:
Q  87 tgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg 133  Q
    |||||||||||| ||| | |||||||||||||||||||||| |||||    
T  100839 tgacttattgattgtatgaatgtaagtatttgataatgcaaatgttg 100885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: scaffold0123
Description:

Target: scaffold0123; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 177 - 394
Target Start/End: Complemental strand, 34158 - 33941
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatag 276  Q
    ||||||||||||||||||||||||||||| ||||||  |||||||||||||||   |||| | |||||||| |||||| ||  |  ||||||||||||||    
T  34158 ggtgaattatgcattgtcgagtccttactcgaagtcgttgcattcatagtcattt-tgaggtcatttgaagaatgtaattgatga-tgtttattacatag 34061  T
Q  277 cttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcct-atgataccacatgcatct--agaa 373  Q
    |||||||||| ||||  || | | || |||||||| ||| |||||||||||||||||||||||||| |||||||| ||| ||||| | ||||||  ||||    
T  34060 cttctgcagaacataattg-gtgatgtttattatgttggtggattcattaacggtaaaattatctccggaatcctaatggtaccataagcatctagagaa 33962  T
Q  374 gagtctagaacatagcatgca 394  Q
    ||||||||||||| |||||||    
T  33961 gagtctagaacattgcatgca 33941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 306 - 397
Target Start/End: Complemental strand, 33924 - 33830
Alignment:
Q  306 attatgctggaggattcattaacggtaaaattatctctggaatcct-atgataccacatgcatct--agaagagtctagaacatagcatgcattt 397  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| ||| ||||||||||||||  ||||||||||||||||| ||||||||||    
T  33924 attatgttggtggattcattaacggtaaaattatctccggaatcctaatggtaccacatgcatctagagaagagtctagaacattgcatgcattt 33830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0123; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 87 - 133
Target Start/End: Complemental strand, 34223 - 34177
Alignment:
Q  87 tgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg 133  Q
    |||||||||||| ||| || ||||||||||||||||||||| |||||    
T  34223 tgacttattgattgtatgggtgtaagtatttgataatgcaaatgttg 34177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1869 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold1869
Description:

Target: scaffold1869; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 177 - 413
Target Start/End: Complemental strand, 1013 - 780
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatag 276  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||   |||| ||| |||||| |||||| || | | |||||||||||||     
T  1013 ggtgagttatgcattgtcgagtctttacttgaagtccatgcattcatagtcat-tttgaggtgaattgaagaatgtaattg-gtgatgtttattacataa 916  T
Q  277 cttctgcagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctagaaga 375  Q
    ||| |||| |  ||| ||  | | || |||||||| | | |||||||||| || |||||||||||  ||||||||| || ||||| ||||||||||||||    
T  915 cttatgcataatata-attggtgatgtttattatgtttgtggattcattagcgataaaattatcttcggaatcctattgctaccatatgcatctagaaga 817  T
Q  376 gtctagaacatagcatgcatttatctattggtgagtcg 413  Q
    || |||||||| ||||||| ||||  ||||||||||||    
T  816 gtttagaacattgcatgcacttat-aattggtgagtcg 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 5e-26; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 11775182 - 11775027
Alignment:
Q  74 gatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgtt-gtaaataacataattcagggtgattgttatgttaatgtct 172  Q
    ||||||||||||||||||| ||||| ||| |||||||||||||||||||||||| |||| || || |||||||||   | ||||| ||||||| |||| |    
T  11775182 gatgaattaatgatgacttgttgattgtatggatgtaagtatttgataatgcaaatgttggtgaaaaacataattggtgatgattattatgttgatgtat 11775083  T
Q  173 atgaggtg--aattatgcattgtcgagtccttacttgaagtccatgcattcatagt 226  Q
    ||  | ||   | |||||||||| ||||||||||||||||||||||||||||||||    
T  11775082 atatgttggagagtatgcattgttgagtccttacttgaagtccatgcattcatagt 11775027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 288 - 417
Target Start/End: Original strand, 18713408 - 18713537
Alignment:
Q  288 catagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacata 387  Q
    |||| ||||||| |||||||||||  |  |||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||||| || |||||     
T  18713408 cataaatgcgggctgattattatgtcgacggattctttaacggtaaaattatctctggaattctatggtaccacatgcatctagaagagtataaaacatt 18713507  T
Q  388 gcatgcatttatctattggtgagtcgagtc 417  Q
     |||| | ||||   |||||||||||||||    
T  18713508 acatgtacttattacttggtgagtcgagtc 18713537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 288 - 425
Target Start/End: Original strand, 18667736 - 18667874
Alignment:
Q  288 catagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacata 387  Q
    |||| ||||||| |||||||||||  |  | |||| |||||||||||||||||||  |||||||| | |||||||||||||||||||||| ||||||||     
T  18667736 cataaatgcgggttgattattatgtcgacgaattctttaacggtaaaattatctccagaatcctacggtaccacatgcatctagaagagtatagaacatt 18667835  T
Q  388 gcatgcatttatctattggtgagtcgagt-cttacttga 425  Q
    ||||| | ||||   |||||||||||||| |||||||||    
T  18667836 gcatgtacttattacttggtgagtcgagtccttacttga 18667874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 87 - 229
Target Start/End: Original strand, 12451935 - 12452083
Alignment:
Q  87 tgacttattgatcgtaaggatgtaagtatttgataatgcaattgttgt---aaataacataattcagggtgattgttatgttaatgtctatgag---gtg 180  Q
    |||||||||||| ||| | ||||||||||||||| ||||||  ||||    ||| |||||||||   | ||||| |||||||||||| |||  |   |||    
T  12451935 tgacttattgattgtatgaatgtaagtatttgattatgcaaacgttggtaaaaaaaacataattggtgatgattattatgttaatgtatatatgttggtg 12452034  T
Q  181 aattatgcattgtcgagtccttacttgaagtccatgcattcatagtcat 229  Q
    | ||||||||||||||||||||||||||||||||| ||||||| |||||    
T  12452035 agttatgcattgtcgagtccttacttgaagtccattcattcatcgtcat 12452083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 413
Target Start/End: Complemental strand, 14616578 - 14616495
Alignment:
Q  330 gtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 413  Q
    |||||||||||||  |||||| ||  ||||||||||||||||| ||||||||||||| ||||||| || |  ||||||||||||    
T  14616578 gtaaaattatctcaagaatccaatagtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcg 14616495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 18173379 - 18173306
Alignment:
Q  327 acggtaaaattatctctggaatcct-atgataccacatgcatctag--aagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||| ||  |||||||||    
T  18173379 acggtaaaattatctctgaaatcctaatgataccacatgcatctagacaagagtctagaaaattccatgcattt 18173306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 229
Target Start/End: Original strand, 18420349 - 18420391
Alignment:
Q  186 tgcattgtcgagtccttacttgaagtccatgcattcatagtcat 229  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  18420349 tgcattgtcgagtc-ttacttgaagtccatgcattcatagtcat 18420391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 335 - 397
Target Start/End: Complemental strand, 20847463 - 20847400
Alignment:
Q  335 attatctctggaatcctat-gataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||| ||||||| || | ||||||||| ||||||||||||||||||||| ||||||||||    
T  20847463 attatctccggaatccaattggtaccacatgtatctagaagagtctagaacattgcatgcattt 20847400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 354 - 397
Target Start/End: Original strand, 41918413 - 41918456
Alignment:
Q  354 gataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||| |||||||||||||||||||||||||| ||||||||||    
T  41918413 gataccgcatgcatctagaagagtctagaacattgcatgcattt 41918456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 19076360 - 19076291
Alignment:
Q  330 gtaaaattatctctggaatcctatgataccacatgcatct--agaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||| ||||||| ||| ||||||||||||||  |||| |||||||||||| ||||||||||    
T  19076360 gtaatattatctccggaatccaatggtaccacatgcatctaaagaaaagtctagaacattgcatgcattt 19076291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 19699233 - 19699274
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  19699233 taccgcatgcatctagaagagtctagaacattgcatgcattt 19699274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 19709818 - 19709859
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  19709818 taccgcatgcatctagaagagtctagaacattgcatgcattt 19709859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 40902365 - 40902406
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  40902365 taccgcatgcatctagaagagtctagaacattgcatgcattt 40902406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 372
Target Start/End: Original strand, 12452118 - 12452186
Alignment:
Q  305 tattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatctaga 372  Q
    ||||||| || |||||||| |||||||||||||||||| | ||||||| || || ||||||||||||||    
T  12452118 tattatgttgaaggattcaataacggtaaaattatctccgaaatcctattggtagcacatgcatctaga 12452186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 397
Target Start/End: Complemental strand, 13933375 - 13933304
Alignment:
Q  327 acggtaaaattatctctggaatcctatga-taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||| |||||||| || | || ||||||||| |||||| |||| |||||| ||||||||||    
T  13933375 acggtaaaattatctttggaatccaattagtatcacatgcatgtagaagtgtctggaacattgcatgcattt 13933304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 11774879 - 11774821
Alignment:
Q  362 atgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtctta 420  Q
    ||||||||||| ||||||||||||| |||||||||||    || |||||||||||||||    
T  11774879 atgcatctagatgagtctagaacattgcatgcatttaatattttgtgagtcgagtctta 11774821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 358 - 396
Target Start/End: Original strand, 15676507 - 15676545
Alignment:
Q  358 ccacatgcatctagaagagtctagaacatagcatgcatt 396  Q
    ||||||||||||||| ||||||||||||| |||||||||    
T  15676507 ccacatgcatctagaggagtctagaacattgcatgcatt 15676545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 16028761 - 16028815
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcata 230  Q
    ||||| || |||||||||||||| ||||||| |||||||||||||||| ||||||    
T  16028761 ggtgatttgtgcattgtcgagtctttacttgaaagtccatgcattcatggtcata 16028815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 330 - 394
Target Start/End: Original strand, 1920034 - 1920099
Alignment:
Q  330 gtaaaattatctctggaatcctatga-taccacatgcatctagaagagtctagaacatagcatgca 394  Q
    ||||||||||||||||||||| || | |||||||||  | |||||| ||||||||||| |||||||    
T  1920034 gtaaaattatctctggaatccaattagtaccacatgtgtgtagaagtgtctagaacattgcatgca 1920099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 230
Target Start/End: Original strand, 10115823 - 10115876
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcata 230  Q
    ||||| ||||| ||||||||||  || ||| |||||||||||||||||||||||    
T  10115823 ggtgatttatgtattgtcgagtgttttcttaaagtccatgcattcatagtcata 10115876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 11923545 - 11923598
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttg-aagtccatgcattcatagtcat 229  Q
    ||||| || |||||||||||||| ||||||| ||||||||||||||| ||||||    
T  11923545 ggtgatttgtgcattgtcgagtctttacttgaaagtccatgcattcacagtcat 11923598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15215506 - 15215547
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||| ||||    
T  15215506 taccgcatgcatctagaagagtctagaacattgcatgtattt 15215547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 425
Target Start/End: Original strand, 18420489 - 18420589
Alignment:
Q  326 aacggtaaaattatctctggaatccta-tgataccacatgcatctagaagagtctagaacatagcatgca-tttatctattggtgagtcgagtcttactt 423  Q
    |||||||||||||||||  |||| ||| || ||| | |||||| ||||||||| |||||||| ||||||| |||||  |||||||||||| ||| |||||    
T  18420489 aacggtaaaattatctccagaattctattggtactatatgcatttagaagagtatagaacattgcatgcactttat-aattggtgagtcgtgtcatactt 18420587  T
Q  424 ga 425  Q
    ||    
T  18420588 ga 18420589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 183 - 366
Target Start/End: Original strand, 95101 - 95282
Alignment:
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatgagttgatttgaagtatgtaaatgcggggtgtttattacatagcttctg 282  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||   |||  |||||||||| |||||| || | | ||||||||||||||||| ||    
T  95101 ttatgcattgtcgagtccttatttgaagtccatgcattcatagtcat-tttgacgtgatttgaagaatgtaactg-gtgatgtttattacatagcttatg 95198  T
Q  283 cagagcatagatgcggggtgattattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgca 366  Q
    || | |||| ||    | || |||||||| | | | |||||||| ||||||||||||||| ||||||||| || |||||||||||    
T  95199 cataacata-attgatgatgtttattatgttagtgaattcattagcggtaaaattatctccggaatcctattgctaccacatgca 95282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 330 - 397
Target Start/End: Original strand, 295582 - 295652
Alignment:
Q  330 gtaaaattatctctggaatccta-tgataccacatgcatct--agaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||| ||  |||||||||    
T  295582 gtaaaattatctctgaaatcctaatgataccacatgcatctagagaagagtctagaaaattccatgcattt 295652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 397
Target Start/End: Original strand, 3767 - 3863
Alignment:
Q  304 ttattatgctggaggattcattaacggtaaaattatctctggaatccta-tgataccacatgcatct--agaagagtctagaacatagcatgcattt 397  Q
    |||||||| ||| ||||||||||||||| |||||||||| ||||||||| || |||||||||||| |  ||||||||||||||||| ||||||||||    
T  3767 ttattatgttggtggattcattaacggtgaaattatctccggaatcctattggtaccacatgcatttagagaagagtctagaacattgcatgcattt 3863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0161; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 229
Target Start/End: Original strand, 3346 - 3399
Alignment:
Q  177 ggtgaattatgcattgtc-gagtccttacttgaagtccatgcattcatagtcat 229  Q
    ||||| |||||||||||  |||||||| ||||||| ||||||||||||||||||    
T  3346 ggtgagttatgcattgtgagagtccttgcttgaagcccatgcattcatagtcat 3399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 38 - 284
Target Start/End: Original strand, 48564 - 48808
Alignment:
Q  38 atgattatcatgttgatacttttggtgat-atgaatagatgaattaatgatgacttattgatcgtaaggatgtaagtatttgataatgcaattgttg-ta 135  Q
    |||||||| |||||||| |||||| |||| || |||  ||| ||| |||||||||  ||||| |||  ||||||||||||||| ||| ||| | ||| |     
T  48564 atgattatgatgttgattcttttgatgattataaatgtatggattgatgatgactggttgattgtatagatgtaagtatttgacaatccaaattttggtg 48663  T
Q  136 aataacataattcagggtgattgttatgttaatgtctatga-ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcataaatg 234  Q
    || ||||||||| |   ||||| |||| ||||||| ||||  ||||| |||| |||||||||||| |||||||||||||||||||||||| ||||   |     
T  48664 aaaaacataattga---tgattattattttaatgtatatgttggtgagttattcattgtcgagtctttacttgaagtccatgcattcataatcat-ttta 48759  T
Q  235 agttgatttgaagtatgtaaatgcggggtgtttattacatagcttctgca 284  Q
    || |||||||| | |||||| || | |||||||||||||| |||||||||    
T  48760 aggtgatttgaggaatgtaattg-gcggtgtttattacattgcttctgca 48808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 330 - 413
Target Start/End: Original strand, 200799 - 200882
Alignment:
Q  330 gtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcg 413  Q
    |||||||||||||  |||||| ||  ||||||||||||||||| ||||||||||||| ||||||| || |  ||||||||||||    
T  200799 gtaaaattatctcaagaatccaatagtaccacatgcatctagaggagtctagaacattgcatgcacttgttaattggtgagtcg 200882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15511 - 15552
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||||||||||| ||||||||||    
T  15511 taccacatgcatctagaagagtctagaacattgcatgcattt 15552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Original strand, 9663 - 9732
Alignment:
Q  331 taaaattatctctggaatccta-tgataccacatgcatct--agaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||| ||||||| |||||||||||||||||  |||||||||||||| ||  |||||||||    
T  9663 taaaattatctctgaaatcctaatgataccacatgcatctagagaagagtctagaaaattccatgcattt 9732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0396 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0396
Description:

Target: scaffold0396; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 166 - 207
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  166 taccgcatgcatctagaagagtctagaacattgcatgcattt 207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 11574 - 11533
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||||||||||||||||||| || ||||||||||    
T  11574 taccacatgcatctagaagagtctagaatattgcatgcattt 11533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 26847 - 26806
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  26847 taccgcatgcatctagaagagtctagaacattgcatgcattt 26806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 27862 - 27821
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  27862 taccgcatgcatctagaagagtctagaacattgcatgcattt 27821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 39858 - 39817
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  39858 taccgcatgcatctagaagagtctagaacattgcatgcattt 39817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 20260 - 20219
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  20260 taccgcatgcatctagaagagtctagaacattgcatgcattt 20219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 256041 - 256082
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||||||||||||||| ||||||||||    
T  256041 taccgcatgcatctagaagagtctagaacattgcatgcattt 256082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 223
Target Start/End: Original strand, 14396 - 14436
Alignment:
Q  183 ttatgcattgtcgagtccttacttgaagtccatgcattcat 223  Q
    ||||||||||||||||| |||||||||| ||||||||||||    
T  14396 ttatgcattgtcgagtcattacttgaagcccatgcattcat 14436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 14588 - 14629
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||||||||| |||||||||||| ||||||||||    
T  14588 taccgcatgcatctagaatagtctagaacattgcatgcattt 14629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 89 - 133
Target Start/End: Original strand, 28039 - 28083
Alignment:
Q  89 acttattgatcgtaaggatgtaagtatttgataatgcaattgttg 133  Q
    |||||||||| ||| |||||||||||||||||||||||| |||||    
T  28039 acttattgattgtatggatgtaagtatttgataatgcaaatgttg 28083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 229
Target Start/End: Complemental strand, 46964 - 46912
Alignment:
Q  177 ggtgaattatgcattgtcgagtccttacttgaagtccatgcattcatagtcat 229  Q
    ||||| ||||||||||||| ||| |||| || |||||||||||||||||||||    
T  46964 ggtgatttatgcattgtcgggtctttacatggagtccatgcattcatagtcat 46912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 330 - 397
Target Start/End: Complemental strand, 46819 - 46751
Alignment:
Q  330 gtaaaattatctctggaatcc-tatgataccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||| ||||||||| | || |||||||||||| |||||  |||||| |||| ||||||||||    
T  46819 gtaaaattatccctggaatccatttggtaccacatgcatgtagaaatgtctagtacattgcatgcattt 46751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 4141 - 4179
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgca 394  Q
    |||||||||||||||||||||||||||| || |||||||    
T  4141 taccacatgcatctagaagagtctagaatattgcatgca 4179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 424
Target Start/End: Complemental strand, 79398 - 79300
Alignment:
Q  326 aacggtaaaattatctctggaatcctatgataccacatgcatctagaagagtctagaacatagcatgcatttatctattggtgagtcgagtcttacttg 424  Q
    |||||||||||| |||  ||||||  ||| ||||| ||||||||||| || |||||||||| ||| |||||| |  |||||||| | ||||| ||||||    
T  79398 aacggtaaaattgtcttcggaatcgaatggtaccagatgcatctagatgaatctagaacattgcacgcatttgttaattggtgaattgagtcatacttg 79300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 12630 - 12663
Alignment:
Q  364 gcatctagaagagtctagaacatagcatgcattt 397  Q
    ||||||||||||||||||||||| ||||||||||    
T  12630 gcatctagaagagtctagaacattgcatgcattt 12663  T

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Target: scaffold0191 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 315 - 356
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||||||||||||||||||||||  |||||||||    
T  315 taccgcatgcatctagaagagtctagaacatttcatgcattt 356  T

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Target: scaffold0112 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 12252 - 12211
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| |||||||||||||| ||||||||||| ||||||||||    
T  12252 taccgcatgcatctagaagggtctagaacattgcatgcattt 12211  T

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Target: scaffold0090 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 36421 - 36462
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||| |||||||||||||||||| ||||||||||    
T  36421 taccgcatgcatatagaagagtctagaacattgcatgcattt 36462  T

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Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 11063 - 11104
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||||||||||| |||||| ||||||||||| ||||||||||    
T  11063 taccacatgcatgtagaagtgtctagaacattgcatgcattt 11104  T

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Target: scaffold0017 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 11168 - 11127
Alignment:
Q  356 taccacatgcatctagaagagtctagaacatagcatgcattt 397  Q
    |||| ||||||||| |||||||||||||||| ||||||||||    
T  11168 taccgcatgcatcttgaagagtctagaacattgcatgcattt 11127  T

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Target: scaffold0282 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0282
Description:

Target: scaffold0282; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 20432 - 20474
Alignment:
Q  186 tgcattgtcgagtccttacttgaagtccatgcattcatagtcata 230  Q
    |||||||||||||| |||||||||||||||||| |||||||||||    
T  20432 tgcattgtcgagtc-ttacttgaagtccatgca-tcatagtcata 20474  T

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