View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9499_low_15 (Length: 404)
Name: NF9499_low_15
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_15 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Complemental strand, 33277795 - 33277412
Alignment:
| Q |
1 |
tttttatcaaatagtttggtggagagaatcacacactaagtgtgtagaagtgtggaattccgggtttcaaccctagagatttactctttttgtttgctga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
33277795 |
tttttgtcaaatagtttggtggagagaatcacacactaagtgtgtagaattgtggaattccgggtttcaaccctaaagatttactctttttgtttgctga |
33277696 |
T |
|
| Q |
101 |
atagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277695 |
atagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatc |
33277596 |
T |
|
| Q |
201 |
agtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattttgacattcacattttatgttacatttttaatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
33277595 |
agtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattttgacattcacaatttatgttacatttttaatt |
33277496 |
T |
|
| Q |
301 |
taatttgattgttatatgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgt |
384 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33277495 |
taatttgattggtatatgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgt |
33277412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 93 - 227
Target Start/End: Complemental strand, 29442226 - 29442092
Alignment:
| Q |
93 |
tttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggca |
192 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||||||| |||||||| || ||||| |||||||| ||||||||||||| || |||||||| |||| |
|
|
| T |
29442226 |
tttgctcaatagggaccatactattgtggtgctggtgctgacaaggcatttggccgtgacattgttgactcacattacaaagcctgtctttatgccggca |
29442127 |
T |
|
| Q |
193 |
ttaacatcagtggtgttaatggagaagttatgcct |
227 |
Q |
| |
|
| ||||||||||| | ||||| ||||| |||||| |
|
|
| T |
29442126 |
tcaacatcagtggaatcaatggtgaagtgatgcct |
29442092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 29441961 - 29441893
Alignment:
| Q |
316 |
atgtagtgggaatttcaagtaggtccagttgttggcatctctgctggtgatgaggtttgggttgctcgt |
384 |
Q |
| |
|
|||||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
29441961 |
atgtagtgggaattccaagttggtccctcagttggcatctctgctggtgatgaaatttgggttgctcgt |
29441893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 103 - 237
Target Start/End: Complemental strand, 26249334 - 26249200
Alignment:
| Q |
103 |
agggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcag |
202 |
Q |
| |
|
|||| ||||| |||||||| |||||||||| || || | || ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || |
|
|
| T |
26249334 |
agggcccatattattgtgggattggtgctgataaagcctatggtcgtgacattgttgatgcacattacaaagcttgtctttatgctggcattaacattag |
26249235 |
T |
|
| Q |
203 |
tggtgttaatggagaagttatgcctagccaggtat |
237 |
Q |
| |
|
||| | |||||||| ||||||||| | ||||||| |
|
|
| T |
26249234 |
tggcatcaatggagaggttatgcctggtcaggtat |
26249200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 7192841 - 7192763
Alignment:
| Q |
158 |
tgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggta |
236 |
Q |
| |
|
|||||| |||||||| || || | |||||||| ||||||||||||||| ||||| ||| ||||||||| |||||||| |
|
|
| T |
7192841 |
tgatgctcattacaaggcttgtttatatgctggaattaacatcagtggtactaatgcagaggttatgcctggccaggta |
7192763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University