View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_16 (Length: 394)
Name: NF9499_low_16
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 20433579 - 20433205
Alignment:
| Q |
1 |
acatagtaacaattttggaaccatttcccttagnnnnnnngcttgccggttgtttagatctctttgaagtttgagcaactatcactgtcaaagaaaatga |
100 |
Q |
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| T |
20433579 |
acatagtaacaattttggaaccatttcccttagtttttttgcttgccgattgtttagatctctttgaagtttgagcaactatcactgtcaaagaaaatga |
20433480 |
T |
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| Q |
101 |
tcaataaatccatcaattgcatgcatagatggatggaaattgttaaaaacaattacgacgaataatacaatgaacgaattcatatcttacatgctgacaa |
200 |
Q |
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| T |
20433479 |
tcaataaatctatcaattgcatgcatagatgga----aacggttaaaaacaattacgacgaataatacaatgaaggaattcatatcatacatgctgacaa |
20433384 |
T |
|
| Q |
201 |
taatgggaaaaatcaacgatggagaaggttgggggaatgagccgcgtcattgagaaggagagaattagtcggaaacatctctagagggcgtcattgagta |
300 |
Q |
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| T |
20433383 |
taatgggaaaaatcaacgatggagaaggttgagggaataagctgcgtcattgagcaagagagaattagtcggaaacatttctagagggtgtcattgagta |
20433284 |
T |
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| Q |
301 |
acgtatgaaatccctatgactccctctagacttgttttcgactaattctctcctactaaacgacacggcgtattctgtc |
379 |
Q |
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| T |
20433283 |
aggtatgaaatccctatgactccctctagacttgtttccgactaattctctcttactaaacgacacggtgtattctgtc |
20433205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 132 - 294
Target Start/End: Original strand, 20433107 - 20433268
Alignment:
| Q |
132 |
gatggaaattgttaaaaacaattacgacgaataatacaatgaacgaattcatatcttacatgctgacaataatgggaaaaatcaacgatggagaaggttg |
231 |
Q |
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| T |
20433107 |
gatgaaaaatgttaaaaacggttacgacgattaacacaatgaatgatttcatatcttacattcaaacaataatcggaaaaattggcgat-gagaaggttg |
20433205 |
T |
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| Q |
232 |
ggggaatgagccgcgtcattgagaaggagagaattagtcggaaacatctctagagggcgtcat |
294 |
Q |
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| T |
20433206 |
acagaatacaccgtgtcgtttagtaagagagaattagtcggaaacaagtctagagggagtcat |
20433268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 17344477 - 17344635
Alignment:
| Q |
50 |
ttgtttagatctctttgaagtttgagcaacta-tcactgtcaaagaaaatgatcaataaatccatcaattgcatgcatagatggatggaaattgttaaaa |
148 |
Q |
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| T |
17344477 |
ttgtttagatctctttgaagttttagcgacaaataactgttaaagaaaatgatcaataaatctatcaa----atgcatcaatagatagaagatgttaaaa |
17344572 |
T |
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| Q |
149 |
acaattacgacgaataatacaatgaacgaattcatatcttacatgctgacaataatgggaaaa |
211 |
Q |
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| T |
17344573 |
acaatttcgacaaataacataatgaaggaactcatatcttacatgctaaaaataatggcaaaa |
17344635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 212
Target Start/End: Complemental strand, 17344292 - 17344126
Alignment:
| Q |
42 |
cttgccggttgtttagatctctttgaagtttgagcaactatcactgtcaaagaaaatgatcaataaatccatcaattgcatgcatagatggatggaaatt |
141 |
Q |
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| T |
17344292 |
cttgccgattgtttgtatctctttgaagtttgagcaacggtcgctatcaaataaaatgatttattaatctattaaatgcatgcata----aatggaaaaa |
17344197 |
T |
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| Q |
142 |
gttaaaaacaattacgacgaataatacaatgaacgaattcatatcttacatgctgacaataatgggaaaaa |
212 |
Q |
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| T |
17344196 |
gtcaaaaacaattacgaaaaataacaaaatgaagaaatttacatcttgcatgctaacactaatgggaaaaa |
17344126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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