View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_17 (Length: 345)
Name: NF9499_low_17
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 329
Target Start/End: Original strand, 43986238 - 43986566
Alignment:
| Q |
1 |
gtcgagtttggagtttattcaaattatcatcaaaatcttcgaatatcactgccctacagtagcttaaaaacccaatcaaagaactcaacaacggaacctc |
100 |
Q |
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| T |
43986238 |
gtcgagcttcgagtttattcaaattttcatcaaaatcttcgaatatcactgccctacagtagcttaaaaacccaatcaaagaactcaacaacggaacctc |
43986337 |
T |
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| Q |
101 |
tcgttcgtcgcagttcctatcctccaagaaacttatctcgttttctaagaatttgatttctctgtcacaatcattccaggtcttgattttaaggtaatga |
200 |
Q |
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| T |
43986338 |
tcgttcgtcgcagttccgatcctccaagaaacttatctcgttttctaagaatttgatttctctgtcacaatcattccagctcttgattttaaggtaatga |
43986437 |
T |
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| Q |
201 |
aggatttcatgcatggtgttcaagtttggttcagttcctctctcgaattgatgcaaaacataatgaagttttttggactcaacctcgtcgttggggtcta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
43986438 |
aggatttcatgcatggtgttcaagtttggttcagttcctctctcgaattgatgcaaaacataatgaagttttttggacgcaacctcgtcgttggggtcta |
43986537 |
T |
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| Q |
301 |
cttcgaatttacctttcctagcttgttta |
329 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
43986538 |
cttcgaatttacctttcctagcttgttta |
43986566 |
T |
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