View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_19 (Length: 344)
Name: NF9499_low_19
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 36397294 - 36396991
Alignment:
| Q |
1 |
aaacactaaacagacaatctggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttct |
100 |
Q |
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| T |
36397294 |
aaacactaaacagacaatttggattgtgtagtgaaaatctagcagaagaacttatgccatgccaattcatttaagaacaatcaagtgctattctatttct |
36397195 |
T |
|
| Q |
101 |
gatattttcttcggctccacacatgccatgccaatgtcaaaaacaatcaagttctttt-atcactacatatgaacaaacacaaacaaaatccattataat |
199 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||| |
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| T |
36397194 |
gatattttcttcggctccaca--tgccatgccaatgtcaaaaacaatcaagttctttttatcactgcatatgaacaaacacaaacgaaatccattataat |
36397097 |
T |
|
| Q |
200 |
tacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggtcct |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397096 |
tacatgattgcatatgtataacaaagcataacaaattaactaatgctgtatcatcgtgcctttctcccacagggaaaaaatatacatgaacttaggtcct |
36396997 |
T |
|
| Q |
300 |
caagac |
305 |
Q |
| |
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|||||| |
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| T |
36396996 |
caagac |
36396991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 186 - 299
Target Start/End: Original strand, 8455143 - 8455256
Alignment:
| Q |
186 |
aaatccattataattacatgattgcatatgtataacaaagcataacaaattaaccaatgctgtatcatcgtgcctttctcccacagggaaaaaatataca |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8455143 |
aaatccattataattacatgattgcatatgtataacaaagcaaaacaaattaactaatgctgtatcatcgtgcctttcttccacagggaaaaaatataca |
8455242 |
T |
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| Q |
286 |
tgaacttaggtcct |
299 |
Q |
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|||||||||||||| |
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| T |
8455243 |
tgaacttaggtcct |
8455256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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