View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_2 (Length: 779)
Name: NF9499_low_2
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 678; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 678; E-Value: 0
Query Start/End: Original strand, 9 - 769
Target Start/End: Complemental strand, 18169556 - 18168795
Alignment:
| Q |
9 |
ttttttcgacagaataattttagattgaaatggtattagctaaa-attttattttcaaattctatttttgccagaaacatggagatatctcatgctctag |
107 |
Q |
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| T |
18169556 |
ttttttcgacaaaataattttagattgaaatggtattagctagagattttattttcaaattctatttttgccagaaacatggagatatctcatgctctag |
18169457 |
T |
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| Q |
108 |
aaatgcaaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataatgtgatatcatgattaaaatttgcttcaatcataattctaagt |
207 |
Q |
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| T |
18169456 |
aaatgcaaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataatgtgatatcatgaataaaacttgattcaatcataattctaagt |
18169357 |
T |
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| Q |
208 |
acatttttggattgacagtgagtttggtagaatcacagtgtaccaccgtgatttcgtcaaatacattgtgtatccaaatatgcactaaatgttgcataag |
307 |
Q |
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| T |
18169356 |
acatttttggattgacagtgtgtttggtagaatgacagtgtaccaccgtgatttcgtcaaatacattgtgtatccaaatatgcactaaatgttgcataag |
18169257 |
T |
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| Q |
308 |
tacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaatcgaagctcaaggaaaatatttacaatcggtactaacgaaggc |
407 |
Q |
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| T |
18169256 |
tacgtgttaatcgattaggatgttgatttcaggtgcagaaacatttgcagcttcgaattgacgctcaaggaaaatatttacaatcggtactaatgaaggc |
18169157 |
T |
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| Q |
408 |
gcaggaagccctctctggatacaattcttcaccaattgggataaaactcacagaagatgaactctctcagttggttactatgatcaacaatgcttgtcca |
507 |
Q |
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| T |
18169156 |
gcaggaagccctctctggatacaattcttcaccaattgggataaaactcacaaaagatgaactctctcaattggttactatgatcaacaatgcttgtcca |
18169057 |
T |
|
| Q |
508 |
agttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaacatgacaatggaacttctttgtgttcattggaaagtt |
607 |
Q |
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| T |
18169056 |
agttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaacatgaaaatggaacttctttgtgttcattggaaagtt |
18168957 |
T |
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| Q |
608 |
cattgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataagagacatcaaaaattctagtgctatttcacttgaattgcc |
707 |
Q |
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| T |
18168956 |
ctttgacatcttctgagagctcagagagaaaggaagagaaacattcattagaagatataagagacttcaaaaattctagtgctatttcacttgaattgcc |
18168857 |
T |
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| Q |
708 |
actaatggccatgcactctaaagagaaatcattgtcgtgtccaatgtttgtgtctctgcttc |
769 |
Q |
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| T |
18168856 |
actaatggccatgcactcagaagagaaatcattgtcgtgtccaatgtctgtgtctgtgcttc |
18168795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 331 - 416
Target Start/End: Complemental strand, 31748617 - 31748532
Alignment:
| Q |
331 |
tgatttcaggtgcagaaacatttgcagcttcgaatcgaagctcaaggaaaatatttacaatcggtactaacgaaggcgcaggaagc |
416 |
Q |
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| T |
31748617 |
tgatttcaggtgcagaaacatttacagtttagaattgaagctcaaggaaagtacttacaatcagtactaatgaaggcacaggaagc |
31748532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 113 - 164
Target Start/End: Complemental strand, 31748739 - 31748688
Alignment:
| Q |
113 |
caaatggaagtagaaaggaaacttaatgaacaaattgaggtaacatatataa |
164 |
Q |
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| T |
31748739 |
caaatggaagtacaaaagaaactttatgaacaaattgaggtaacatttataa |
31748688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 490 - 572
Target Start/End: Complemental strand, 31748452 - 31748370
Alignment:
| Q |
490 |
atcaacaatgcttgtccaagttctccaatctcagatctaacagaatcaagagggttaagtttaaactacgaggagaggaaaca |
572 |
Q |
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||||||||||| ||||| ||||||||| | ||||| || |||||| ||||||| || |||||||||| || ||||||||||| |
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| T |
31748452 |
atcaacaatgcatgtcctagttctccactttcagaactgacagaaacaagaggttttagtttaaacttcggtgagaggaaaca |
31748370 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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