View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_21 (Length: 284)
Name: NF9499_low_21
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_21 |
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| [»] scaffold0617 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 655276 - 655011
Alignment:
| Q |
1 |
tggcatggaaattatacataattcaaagggaatatttatgtgtcaaagaaagtatgcgagagaagtgctggcaaggtttggcatgtctgatagcaaacca |
100 |
Q |
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| T |
655276 |
tggcatggaaattatacagaattcaaagggaatatttatgtgtcaaagaaagtatgcgagagaagtgctggcaaggtttggcatgtctgatagcaaacca |
655177 |
T |
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| Q |
101 |
gttggaaatcctattgtaccaggaacaaggcttttcaaggatgagaagggaaccaagatcgattcaaccatgttcaagcaagttgttggaagcttgatgt |
200 |
Q |
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| T |
655176 |
gttggaaatcctattgtaccaggcacaaggctttccaaggatgagaagggaaccaagatcgattcaaccatgttcaagcaagttgttggaagcttgatgt |
655077 |
T |
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| Q |
201 |
acttgacagcaacaagaccagacattatgtttggggtgagtttgattagcagatatatgtcatctc |
266 |
Q |
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| T |
655076 |
acttgacagcaacaagaccagacattatgtttggggtgagtttgattagcagatatatgtcatctc |
655011 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Original strand, 14247246 - 14247327
Alignment:
| Q |
171 |
tgttcaagcaagttgttggaagcttgatgtacttgacagcaacaagaccagacattatgtttggggtgagtttgattagcag |
252 |
Q |
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| T |
14247246 |
tgttcaagcaagtggttggaagcctcatgtacttgactgtaactagacctgacatgatgtttggtgttagtttaataagcag |
14247327 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: scaffold0617
Description:
Target: scaffold0617; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 736 - 655
Alignment:
| Q |
171 |
tgttcaagcaagttgttggaagcttgatgtacttgacagcaacaagaccagacattatgtttggggtgagtttgattagcag |
252 |
Q |
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| T |
736 |
tgttcaagcaagtggttggaagcctcatgtacttgactgtaactagacctgacatgatgtttggtgttagtttaataagcag |
655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0617; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 6180 - 6099
Alignment:
| Q |
171 |
tgttcaagcaagttgttggaagcttgatgtacttgacagcaacaagaccagacattatgtttggggtgagtttgattagcag |
252 |
Q |
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| T |
6180 |
tgttcaagcaagtggttggaagcctcatgtacttgactgtaactagacctgacatgatgtttggtgttagtttaataagcag |
6099 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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