View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9499_low_3 (Length: 510)

Name: NF9499_low_3
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9499_low_3
NF9499_low_3
[»] chr7 (10 HSPs)
chr7 (2-493)||(35611851-35612325)
chr7 (315-493)||(3614505-3614696)
chr7 (315-465)||(5569121-5569283)
chr7 (255-293)||(18665312-18665350)
chr7 (253-293)||(15901161-15901201)
chr7 (254-293)||(10555113-10555152)
chr7 (254-293)||(15336393-15336432)
chr7 (254-293)||(47317825-47317864)
chr7 (255-293)||(27870314-27870352)
chr7 (256-293)||(15899549-15899586)
[»] scaffold1903 (1 HSPs)
scaffold1903 (315-493)||(928-1118)
[»] chr4 (11 HSPs)
chr4 (325-452)||(9981883-9982021)
chr4 (456-493)||(9981857-9981894)
chr4 (254-293)||(40729948-40729987)
chr4 (254-293)||(52171613-52171652)
chr4 (254-292)||(42077789-42077827)
chr4 (254-292)||(53896898-53896936)
chr4 (254-293)||(1593865-1593904)
chr4 (254-293)||(14968406-14968445)
chr4 (254-293)||(43035767-43035806)
chr4 (254-293)||(53897699-53897738)
chr4 (254-282)||(50911438-50911466)
[»] chr3 (7 HSPs)
chr3 (388-428)||(33129741-33129781)
chr3 (254-293)||(30288200-30288239)
chr3 (254-293)||(33840295-33840334)
chr3 (254-293)||(51545241-51545280)
chr3 (254-288)||(33841108-33841142)
chr3 (254-292)||(44006395-44006433)
chr3 (254-286)||(44846956-44846988)
[»] chr8 (4 HSPs)
chr8 (254-293)||(33175262-33175301)
chr8 (254-293)||(44373991-44374030)
chr8 (254-293)||(8316233-8316272)
chr8 (254-293)||(23642867-23642906)
[»] chr2 (2 HSPs)
chr2 (254-290)||(37202813-37202849)
chr2 (255-293)||(31853667-31853705)
[»] chr1 (3 HSPs)
chr1 (254-290)||(33217002-33217038)
chr1 (254-293)||(37770819-37770858)
chr1 (254-292)||(17374031-17374069)
[»] chr6 (1 HSPs)
chr6 (254-293)||(31860749-31860788)
[»] chr5 (1 HSPs)
chr5 (254-293)||(11822244-11822283)


Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 493
Target Start/End: Complemental strand, 35612325 - 35611851
Alignment:
Q  2 aaaattttcaccactcaattgattcaacttcgtcttatttattcaaaattttcaccgcattttnnnnnnnn--ttagatttactttgatatacaaactaa 99  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||          ||||||||| |||||||||||||||||    
T  35612325 aaaattttcaccactcaattgattcaacttcgtcttttttattcaaaattttcaccacatttttaaaaaaaaattagatttattttgatatacaaactaa 35612226  T
Q  100 attactttgtcnnnnnnnnagtttggattaatatttattaaaggaatattttaattaggaatgacgatgcaagtcagtccagccagcttaggactgatac 199  Q
    |||||||||||         ||||||||||||||||||||||||||||||||||||||||||||| |||||||| || ||      |||||||| |||      
T  35612225 attactttgtcttttttat-gtttggattaatatttattaaaggaatattttaattaggaatgacaatgcaagttagccc------cttaggaccgatg- 35612134  T
Q  200 actattagcccgtaaaatacgggcgggacattttgaggtggtggtttcaactacgaaaattgcttttctgacattgataacttcacaatgacacnnnnnn 299  Q
        ||||||||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |           
T  35612133 ----ttagcccgtaaaatacggcggggccattttgaggtggtggtttcaactacaaaaattgcttttctgacattgataacttcacaatgaaataagaaa 35612038  T
Q  300 nttactgaaaagctc-------tagttaactac-gctgaatacttttcttcaattttttaggtacagagaaccaacctaatgttcaatttccttgcgttc 391  Q
     |||   ||| ||||       ||||||||||| |||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||            
T  35612037 attatccaaaggctcccagcggtagttaactaccgctgaatacttttctttaattttttaggtactgagaaccaacccaatgttcaatttcc-------- 35611946  T
Q  392 aatttccctgctacattcacatattcacattcatattatttcctctgacttctctttctaaccattctctttctaatatgctacaaaaatcatcttcttc 491  Q
           |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  35611945 -------ctgctacattcacatattcacattcatattctttcctctgacttctctttctaaccattctctttctaatatgctaaaaaaatcatcttcttc 35611853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 315 - 493
Target Start/End: Original strand, 3614505 - 3614696
Alignment:
Q  315 tagttaactac-gctgaatacttttcttcaattttttaggtacagagaaccaacctaatgttcaatttccttgcgttcaattt------------ccctg 401  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||            || ||    
T  3614505 tagttaactaccgctaaatacttttcttcaattttttaggtgcagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttcccttg 3614604  T
Q  402 ctacattcacatattcacattcatattatttcctctgacttctctttctaaccattctctttctaatatgctacaaaaatcatcttcttcat 493  Q
    ||||||||||||||||||||||||||| |||||| |  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||    
T  3614605 ctacattcacatattcacattcatattctttcctttaccttctatttctaacgattctctttctaatatgctacaaaaatcatcttcttcat 3614696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 315 - 465
Target Start/End: Complemental strand, 5569283 - 5569121
Alignment:
Q  315 tagttaactac-gctgaatacttttcttcaattttttaggtacagagaaccaacctaatgttcaatttccttgcgttca-----------atttccctgc 402  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||           |||||||| |    
T  5569283 tagttaactaccgctgaatacttttcttcaattttttaggtacagagaaccaacccaatcttcaatttccttgcgttcaatttttcttcaatttccctac 5569184  T
Q  403 tacattcacatattcacattcatattatttcctctgacttctctttctaaccattctctttct 465  Q
    |||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||    
T  5569183 tacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttct 5569121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 18665312 - 18665350
Alignment:
Q  255 aaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  18665312 aaaattgcttttctgacattgagaacttcacaatgacac 18665350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 293
Target Start/End: Complemental strand, 15901201 - 15901161
Alignment:
Q  253 cgaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  15901201 cgaaagttgcttttctgacatcgataacttcacaatgacac 15901161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 10555152 - 10555113
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  10555152 gaaaattgcttttctgacattgataagttcacattgacac 10555113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 15336393 - 15336432
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||||| ||||||||||| ||||    
T  15336393 gaaaattgcttttctgacattgagaacttcacaataacac 15336432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 47317864 - 47317825
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||||| ||||| ||||||||||    
T  47317864 gaaaattgcttttctgacattgaaaactttacaatgacac 47317825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 27870352 - 27870314
Alignment:
Q  255 aaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  27870352 aaaattgcttttttgacattgataacttcacattgacac 27870314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 293
Target Start/End: Original strand, 15899549 - 15899586
Alignment:
Q  256 aaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||| ||||||||||||||||| ||||||    
T  15899549 aaattgcttttctaacattgataacttcacattgacac 15899586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1903 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: scaffold1903
Description:

Target: scaffold1903; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 315 - 493
Target Start/End: Complemental strand, 1118 - 928
Alignment:
Q  315 tagttaactac-gctgaatacttttcttcaattttttaggtacagagaaccaacctaatgttcaatttccttgcgtt-----------caatttccctgc 402  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||| ||| |||||||||||||| ||           |||||||||||     
T  1118 tagttaactaccgctgaatacttttcttcaattttttaagtacaaagaaccaacccaatcttcaatttccttgcatttaatttttcttcaatttccctgt 1019  T
Q  403 tacattcacatattcacattcatattatttcctctgacttctctttctaaccattctctttctaatatgctacaaaaatcatcttcttcat 493  Q
     ||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1018 aacattcacatattcacattcatattctttcctctaccttctctttctaaccattctctttctaatatgctacaaaaatcatcttcttcat 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 325 - 452
Target Start/End: Complemental strand, 9982021 - 9981883
Alignment:
Q  325 cgctgaatacttttcttcaattttttaggtacagagaaccaacctaatgttcaatttccttgcgt-----------tcaatttccctgctacattcacat 413  Q
    ||||||||| ||||||||||||||| |||||||||||||||||| ||| ||||||||||||||||           ||||||||| ||||||||||||||    
T  9982021 cgctgaatatttttcttcaatttttaaggtacagagaaccaacccaatcttcaatttccttgcgttcaaattttcttcaatttccatgctacattcacat 9981922  T
Q  414 attcacattcatattatttcctctgacttctctttctaa 452  Q
    ||||||||||||||| ||||||||  |||||||||||||    
T  9981921 attcacattcatattctttcctctaccttctctttctaa 9981883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 456 - 493
Target Start/End: Complemental strand, 9981894 - 9981857
Alignment:
Q  456 ttctctttctaatatgctacaaaaatcatcttcttcat 493  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9981894 ttctctttctaatatgctacaaaaatcatcttcttcat 9981857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 40729987 - 40729948
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  40729987 gaaaattgcttttctgacattgaaaacttcacaatgacac 40729948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 52171652 - 52171613
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||||||||| ||||||||||||    
T  52171652 gaaaattgcttttctgacattgataacatcacaatgacac 52171613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 42077789 - 42077827
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgaca 292  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  42077789 gaaaattgcttttctgacattgagaacttcacaatgaca 42077827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 53896898 - 53896936
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgaca 292  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  53896898 gaaaattgcttttctgacattgagaacttcacaatgaca 53896936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 1593904 - 1593865
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  1593904 gaaaattgcttttctgacatagaaaacttcacaatgacac 1593865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 14968406 - 14968445
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||| |||||||||||||||||| ||||||    
T  14968406 gaaaattgcttttcagacattgataacttcacattgacac 14968445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 43035767 - 43035806
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  43035767 gaaaattgcttttctgacattgataagttcacattgacac 43035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 53897738 - 53897699
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||| |||||||||||||||| ||||||||||||||||    
T  53897738 gaaaatggcttttctgacattgagaacttcacaatgacac 53897699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 282
Target Start/End: Complemental strand, 50911466 - 50911438
Alignment:
Q  254 gaaaattgcttttctgacattgataactt 282  Q
    |||||||||||||||||||||||||||||    
T  50911466 gaaaattgcttttctgacattgataactt 50911438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 428
Target Start/End: Original strand, 33129741 - 33129781
Alignment:
Q  388 gttcaatttccctgctacattcacatattcacattcatatt 428  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  33129741 gttcaatttccctgctacattcacacattcacattcatatt 33129781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 30288239 - 30288200
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||| |||||||||||||| ||||||||||||||||    
T  30288239 gaaaattgattttctgacattgagaacttcacaatgacac 30288200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 33840295 - 33840334
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  33840295 gaaaattgcttttctgatattgagaacttcacaatgacac 33840334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 51545241 - 51545280
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  51545241 gaaaattgcttttctgacatagaaaacttcacaatgacac 51545280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 288
Target Start/End: Complemental strand, 33841142 - 33841108
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaat 288  Q
    ||||||||||||||||||||||| |||||||||||    
T  33841142 gaaaattgcttttctgacattgagaacttcacaat 33841108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Original strand, 44006395 - 44006433
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgaca 292  Q
    ||||||||||||||||||||||| || ||||||||||||    
T  44006395 gaaaattgcttttctgacattgaaaatttcacaatgaca 44006433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 286
Target Start/End: Original strand, 44846956 - 44846988
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcaca 286  Q
    ||||||||||||||||||||||| |||||||||    
T  44846956 gaaaattgcttttctgacattgaaaacttcaca 44846988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 33175301 - 33175262
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  33175301 gaaaattgcttttctgacattgagaacttcacaatgacac 33175262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 44373991 - 44374030
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  44373991 gaaaattgcttttctgacattcataacttcacaatgacac 44374030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Original strand, 8316233 - 8316272
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  8316233 gaaaattgcttttctgacattgataagttcacattgacac 8316272  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 23642906 - 23642867
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  23642906 gaaaattgcttttctgacattgaatacttcacaatgacac 23642867  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 37202813 - 37202849
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatga 290  Q
    ||||||||||||||||||||||| |||||||||||||    
T  37202813 gaaaattgcttttctgacattgagaacttcacaatga 37202849  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 255 - 293
Target Start/End: Original strand, 31853667 - 31853705
Alignment:
Q  255 aaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||| ||||| ||||||||||    
T  31853667 aaaattgcttttctgacattgaaaactttacaatgacac 31853705  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 33217038 - 33217002
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatga 290  Q
    ||||||||||||||||||||||| |||||||||||||    
T  33217038 gaaaattgcttttctgacattgaaaacttcacaatga 33217002  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 37770858 - 37770819
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||||||||| |||||| ||||||    
T  37770858 gaaaattgcttttctgacattgataagttcacattgacac 37770819  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 292
Target Start/End: Complemental strand, 17374069 - 17374031
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgaca 292  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  17374069 gaaaattgctttactgacattcataacttcacaatgaca 17374031  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 31860788 - 31860749
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  31860788 gaaaattgcttttctgacatagaaaacttcacaatgacac 31860749  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 293
Target Start/End: Complemental strand, 11822283 - 11822244
Alignment:
Q  254 gaaaattgcttttctgacattgataacttcacaatgacac 293  Q
    |||||||||||||||||||| || ||||||||||||||||    
T  11822283 gaaaattgcttttctgacatagaaaacttcacaatgacac 11822244  T

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