View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_32 (Length: 248)
Name: NF9499_low_32
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_32 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 26094080 - 26094317
Alignment:
| Q |
1 |
caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa |
100 |
Q |
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| T |
26094080 |
caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa |
26094179 |
T |
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| Q |
101 |
attaaccgaatctagcataaaaattag---nnnnnnnncctcagtcataacaaattatcagcatatcataacatgtaatttagtcttcacagattaagaa |
197 |
Q |
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| T |
26094180 |
attaaccgaatctagcataaaaattagaaaaaaaaaaacctcagtcataaaaaattatcagcatatcataacatgtaatttagtcttcacagattaagaa |
26094279 |
T |
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| Q |
198 |
aaacaataatactcagttgtagaatgaaggaatgagaa |
235 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
26094280 |
aaacaataatactcagttgtagaatgaaggaatgagaa |
26094317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 26105512 - 26105634
Alignment:
| Q |
1 |
caagatccactggactctgtgctttcccatttgagcatgctgcgaatgattgttttagtgttccccatttcagaggaccatttggtccaatataactaaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||| ||||| ||||| ||| | | || |||||||| ||| ||||||||||||||||||||||||||| |
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| T |
26105512 |
caagatccactggactttgtgctttcccatttgaacatgccgcgaaagatggactcagagttccccacttctcaggaccatttggtccaatataactaaa |
26105611 |
T |
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| Q |
101 |
attaaccgaatctagcataaaaa |
123 |
Q |
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||||||||||||||||||||||| |
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| T |
26105612 |
attaaccgaatctagcataaaaa |
26105634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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