View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_33 (Length: 236)
Name: NF9499_low_33
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_33 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 218
Target Start/End: Complemental strand, 10460669 - 10460460
Alignment:
| Q |
9 |
aagcagagatggtaacttatcaataatccccaagacctcacatatggatatgaatttatttccctccttgatcttaacaggtattgacacaggcaaagcc |
108 |
Q |
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| T |
10460669 |
aagcatagatggtaacttatcaataatccccaagacctcacatatggatatgaatttatttccctccttgatcttaacaggtattgacacaggcaaagcc |
10460570 |
T |
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| Q |
109 |
ttagtagaagaaataaggaaggaaaacgaaagagaaagtgaaagccaaactctattgttggaacctttgctagcattgactggatcattaacaaagtcaa |
208 |
Q |
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| T |
10460569 |
ttagtagaagaaataaggaaggaaaatgaaagagaaagtgaaagccaaactctattgttggaacctttgctagcattgactggatcattaacaaagtcaa |
10460470 |
T |
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| Q |
209 |
agccagaaac |
218 |
Q |
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| T |
10460469 |
agccagaaac |
10460460 |
T |
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