View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_35 (Length: 228)
Name: NF9499_low_35
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 13 - 106
Target Start/End: Original strand, 30652431 - 30652524
Alignment:
| Q |
13 |
cagagacggagagaagaaagcagaagaaaatcaaggaagtagtcatttggattttggaaatgtgtaaccgtttgtacttagctctttgatgagg |
106 |
Q |
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| T |
30652431 |
cagagacggagagaagaaagcagaagaaaatcaaggaagtagtcatttggattttggaaatgtgtaaccgtttgtgcttagctctttgatgagg |
30652524 |
T |
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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 164 - 211
Target Start/End: Original strand, 30652586 - 30652633
Alignment:
| Q |
164 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatg |
211 |
Q |
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| T |
30652586 |
acgtggttgtcatttgtttccttctttttagccattttgtgcattatg |
30652633 |
T |
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