View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9499_low_6 (Length: 467)
Name: NF9499_low_6
Description: NF9499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9499_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 20 - 460
Target Start/End: Original strand, 25892075 - 25892533
Alignment:
| Q |
20 |
tgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataagatcagtatattcttagagatggagtcacacacacaggaataaa |
119 |
Q |
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| T |
25892075 |
tgttgatcaattcaattcctctttctctgcttaatcattatccaaccagttaataagatcagtatattcttagagatggagtcacacacacaggaataaa |
25892174 |
T |
|
| Q |
120 |
tatattcctccattcgaagtcttttttgttgtcgagaattatgcttgataaaatctttacttggttcatagtcatcatacacattatcctttgatcgagg |
219 |
Q |
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| T |
25892175 |
tgtattcctccattcgaagtctttt--gttgtcgagaattatgcttgataaaatctttacttggttcatagtcatcatacacattatcctttgattgagg |
25892272 |
T |
|
| Q |
220 |
aagttatgtggcatcctcctctttgctatactactgatcgtactgttggaggccgtcacagtctttccatttgtggtggtatttttcgagatagtagtgc |
319 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25892273 |
aagttatgtggcatcctcctctttgctatactattgatcgtactgttggaggccgtcacagtctttccatttgtggtggtatttttcgagatagtagtgc |
25892372 |
T |
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| Q |
320 |
aactacttttgagtattgtgtggaaaatcttgtatatttagaatgcttttcatgctgaacttataagagctatgc---------------------aaag |
398 |
Q |
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|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
25892373 |
aactacttttgagtattgtgtggaaaatcttg-gtatttggaatgcttttcatgctgaacttataagagctatgctagttgaaattgctttcaaaaaaag |
25892471 |
T |
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| Q |
399 |
gttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgctt |
460 |
Q |
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| T |
25892472 |
gttcgagaaatcttgagttggaatagttcattagtagttagtaagtcttgttatctctgctt |
25892533 |
T |
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