View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9500_low_1 (Length: 403)
Name: NF9500_low_1
Description: NF9500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9500_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 52724742 - 52725130
Alignment:
| Q |
1 |
ccaccatcatcaccaccttctctgagcccaagctcgaaaccgtgatagacctctcaatcttcccttcctttcattccaatattcgtcaattcgtttcatc |
100 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724742 |
ccaccaccatcaccaccttctctgagcccaagctcgaaaccgtcatagacctctcaatcttcccttcctttcattccaatattcgtcaattcgtttcatc |
52724841 |
T |
|
| Q |
101 |
tggtaaagaggcataccgcgatttacagaccctattcactattgaccataaccgaagagtcatcatttcatgtcgcccttcaaccttgcacttcgtagga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52724842 |
tggtaaagaggcataccgcgatttacagaccctattcactattgaccataaccgaagagtcatcatttcatgtcgcccttccaccttgcacttcgtagga |
52724941 |
T |
|
| Q |
201 |
acttcagctgctttgaccctcatcgctttttctgttttgagggtattctttgaattggtttctaggtatgcgtcgtggagtagtcgaaacgcatctagct |
300 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
52724942 |
acttcagctgctttgactctcatcgctttttctgttttgagggtattctttgaattggtttctaggtttgcgtcgtggagtagtcgaaacccatctagct |
52725041 |
T |
|
| Q |
301 |
acaataataacaataagggtattatggtgcggagagaccggagtcttggtggaaaagaggtggttattggattgagtcccattcacagcacaacccct |
398 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52725042 |
---------acaataagggtattatggtgcggagagaccggagtcttggtggaaaagaggtggttattggattgagtcccattcacagcacaacccct |
52725130 |
T |
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