View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9500_low_12 (Length: 244)
Name: NF9500_low_12
Description: NF9500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9500_low_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 229
Target Start/End: Original strand, 49885853 - 49886068
Alignment:
| Q |
14 |
agacaacggtttgagaataaaatcatttccagagagatttgctggtggagcatctgagatatttttcactaacattaacatgacaaatgttaaaaatcca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49885853 |
agacaacggtttgagaataaaatcatttccagagagatttgctggtggagcatctgagatatttttcactaacattaacatgacaaatgttaaaaatcca |
49885952 |
T |
|
| Q |
114 |
atcattattgaccaggagtatgaatgtgatgatatttgtaaaaagaaggtacttatttgcactacaacaaaaactattttaacagcaagatgttaataat |
213 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49885953 |
atcattattgaccaggaatatgaatgtgatgatatttgtaaaaagaaggtacttatttgcactacaacaaaaactattttaacagcaagatgttaataat |
49886052 |
T |
|
| Q |
214 |
tgtgatacttatatat |
229 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
49886053 |
tgtgatacttatatat |
49886068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University