View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9500_low_9 (Length: 281)
Name: NF9500_low_9
Description: NF9500
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9500_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 140
Target Start/End: Complemental strand, 35363821 - 35363692
Alignment:
| Q |
11 |
ttggtgttggagaaagctttaaattgagggaattaaaaagactagatagaaaagtaactctcccaatagttaggtgcaaaagatttaattaatcgatttt |
110 |
Q |
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| T |
35363821 |
ttggtgttggagaaagctttaaattgagggaaataaaaagactagatagaaaagtaactctcccaatagttaggtgcaaaagatttaattaatcaatttt |
35363722 |
T |
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| Q |
111 |
ggttttgtggtagttatgtcatgacaaatg |
140 |
Q |
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| T |
35363721 |
ggttttgtggtagttatgtcatgacaaatg |
35363692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 35362867 - 35362785
Alignment:
| Q |
199 |
ggaaatgataaatcgaccactccaacttgtacagagcttgtaccacttgctgatgtggcaagtgttgattttaaaaaattgtt |
281 |
Q |
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| T |
35362867 |
ggaaatgataaatcgaccactccaacttgtacagagcttgtaccacttgctgatgtggcaagtgttaattttaaaaaattgtt |
35362785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 38682281 - 38682345
Alignment:
| Q |
48 |
aagactagatagaaaagtaactctcccaatagttaggtgcaaaagatttaattaatcgattttggtt |
114 |
Q |
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| T |
38682281 |
aagactagatagataagtaactctctcagtagttaggtgc--aagatttaatgaatcaattttggtt |
38682345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 38683534 - 38683598
Alignment:
| Q |
48 |
aagactagatagaaaagtaactctcccaatagttaggtgcaaaagatttaattaatcgattttggtt |
114 |
Q |
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| T |
38683534 |
aagactagatagataagtaactctctcagtagttaggtgc--aagatttaatgaatcaattttggtt |
38683598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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