View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_high_12 (Length: 202)

Name: NF9501_high_12
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_high_12
NF9501_high_12
[»] chr2 (2 HSPs)
chr2 (18-128)||(36287534-36287644)
chr2 (127-184)||(6298031-6298088)
[»] chr3 (4 HSPs)
chr3 (129-184)||(31002592-31002647)
chr3 (128-184)||(10586328-10586384)
chr3 (152-184)||(45904594-45904626)
chr3 (152-184)||(45905050-45905082)
[»] chr8 (4 HSPs)
chr8 (126-184)||(37771603-37771661)
chr8 (128-184)||(8331466-8331522)
chr8 (128-184)||(25368137-25368193)
chr8 (128-185)||(34818843-34818900)
[»] chr1 (3 HSPs)
chr1 (122-184)||(41098097-41098159)
chr1 (137-184)||(8267976-8268023)
chr1 (128-169)||(17536684-17536725)
[»] chr4 (2 HSPs)
chr4 (128-184)||(7903243-7903299)
chr4 (124-184)||(34560387-34560447)
[»] chr5 (3 HSPs)
chr5 (127-184)||(13301631-13301688)
chr5 (135-184)||(31731444-31731493)
chr5 (128-184)||(21324111-21324167)
[»] scaffold0070 (1 HSPs)
scaffold0070 (128-184)||(62930-62986)
[»] scaffold0061 (1 HSPs)
scaffold0061 (128-184)||(45678-45734)
[»] scaffold0041 (1 HSPs)
scaffold0041 (128-184)||(35800-35856)
[»] scaffold0017 (1 HSPs)
scaffold0017 (128-184)||(153053-153109)
[»] chr7 (2 HSPs)
chr7 (128-184)||(27256136-27256192)
chr7 (127-184)||(40865498-40865555)
[»] chr6 (2 HSPs)
chr6 (127-184)||(12662753-12662811)
chr6 (140-184)||(6113118-6113162)
[»] scaffold0060 (2 HSPs)
scaffold0060 (135-184)||(53045-53094)
scaffold0060 (134-184)||(48002-48052)
[»] scaffold0020 (1 HSPs)
scaffold0020 (132-184)||(1371-1423)


Alignment Details
Target: chr2 (Bit Score: 111; Significance: 3e-56; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 36287644 - 36287534
Alignment:
Q  18 acccttatgaaaattgtgaaaacagtcatgtctgataataaccccaccattgtagactttcgaaaccagctgcacgaatgtgtgacaatcataataaatt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36287644 acccttatgaaaattgtgaaaacagtcatgtctgataataaccccaccattgtagactttcgaaaccagctgcacgaatgtgtgacaatcataataaatt 36287545  T
Q  118 cttaagtttct 128  Q
    |||||||||||    
T  36287544 cttaagtttct 36287534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 6298088 - 6298031
Alignment:
Q  127 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6298088 ctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaat 6298031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 129 - 184
Target Start/End: Original strand, 31002592 - 31002647
Alignment:
Q  129 gttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31002592 gttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 31002647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 10586384 - 10586328
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||| |||||||||||||| |||| ||||||| || |||||||||||||||||||    
T  10586384 tgttgttaattgttgtttttcgggtttagaagcgaacatttttaataaagtcgaaat 10586328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 45904626 - 45904594
Alignment:
Q  152 ttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||||||||| ||||    
T  45904626 ttcagaagcgtacctttttaataaagtcaaaat 45904594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 45905082 - 45905050
Alignment:
Q  152 ttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||||||||| ||||    
T  45905082 ttcagaagcgtacctttttaataaagtcaaaat 45905050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 37771603 - 37771661
Alignment:
Q  126 tctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37771603 tctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaat 37771661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 8331522 - 8331466
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||    
T  8331522 tgttgtaaattgttgtttttcgggttcagaagcatacctttttaataaagtcgaaat 8331466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 25368193 - 25368137
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  25368193 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaat 25368137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 34818900 - 34818843
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaatt 185  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||| |||||    
T  34818900 tgttgtaaattgttgttttttgggttcagaagcgtacctttttaataaagtcaaaatt 34818843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 41098159 - 41098097
Alignment:
Q  122 agtttctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  41098159 agtttttgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaat 41098097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 137 - 184
Target Start/End: Complemental strand, 8268023 - 8267976
Alignment:
Q  137 ttgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  8268023 ttgttgttttacgggttcagaaacgtacctttttaataaaatcgaaat 8267976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 128 - 169
Target Start/End: Complemental strand, 17536725 - 17536684
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttt 169  Q
    |||||||||||||||||||||  |||||||| ||||||||||    
T  17536725 tgttgtaaattgttgtttttcgagttcagaaacgtacctttt 17536684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 7903299 - 7903243
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  7903299 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcgaaat 7903243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 124 - 184
Target Start/End: Original strand, 34560387 - 34560447
Alignment:
Q  124 tttctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| |||||    
T  34560387 tttctgttgtaaattgtcgtttttcgggttcagaaacgtacctttttaataaagttgaaat 34560447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 8e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 13301688 - 13301631
Alignment:
Q  127 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  13301688 ctgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagtcaaaat 13301631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 184
Target Start/End: Original strand, 31731444 - 31731493
Alignment:
Q  135 aattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  31731444 aattgttgtttttcgggttcaaaagcgtacctttttaataaagtcgaaat 31731493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 21324167 - 21324111
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||| |||||| ||||||||||| ||| ||||||| |||||||||||    
T  21324167 tgttgtaaattgttatttttcgggttcagaagcatacttttttaaaaaagtcgaaat 21324111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 62930 - 62986
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  62930 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaat 62986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 45678 - 45734
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  45678 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagttgaaat 45734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 35856 - 35800
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||    
T  35856 tgttgtaaattgttgtttttcgggttcataagcgtacctttttaataaagtcgaaat 35800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Complemental strand, 153109 - 153053
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||    
T  153109 tgttgtaaattgttgtttttcgggttcagaagcgtacctttttaataaagttgaaat 153053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 3e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 27256136 - 27256192
Alignment:
Q  128 tgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  27256136 tgttgtaaattgttgtttttcgagttcagaagcgtacctttttaataaagtcgaaat 27256192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 40865555 - 40865498
Alignment:
Q  127 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||    
T  40865555 ctgttgtaaattgttgtttttcgggttcagaagagtacctatttaataaagtcgaaat 40865498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 127 - 184
Target Start/End: Complemental strand, 12662811 - 12662753
Alignment:
Q  127 ctgttgtaaattgttgtttttcaggttcagaagcgtacctttttaat-aaagtcgaaat 184  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||    
T  12662811 ctgttgtaaattgttgtttttcgggttcagaagtgtacctttttaataaaagtcgaaat 12662753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 184
Target Start/End: Complemental strand, 6113162 - 6113118
Alignment:
Q  140 ttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||| ||||||||| ||||||||||| ||||| |||||||    
T  6113162 ttgtttttcgggttcagaaacgtacctttttgataaaatcgaaat 6113118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 53094 - 53045
Alignment:
Q  135 aattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||  ||||||||||||||||||| ||||||||||||||    
T  53094 aattgttgtttttcgcgttcagaagcgtaccttttcaataaagtcgaaat 53045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 184
Target Start/End: Complemental strand, 48052 - 48002
Alignment:
Q  134 aaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    ||||||||||||||| |||||||||||||| ||||| ||||||||| ||||    
T  48052 aaattgttgtttttcgggttcagaagcgtaacttttcaataaagtcaaaat 48002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 132 - 184
Target Start/End: Complemental strand, 1423 - 1371
Alignment:
Q  132 gtaaattgttgtttttcaggttcagaagcgtacctttttaataaagtcgaaat 184  Q
    |||||||||||||||||  ||||| ||||||||||| ||||||||||||||||    
T  1423 gtaaattgttgtttttctagttcataagcgtaccttcttaataaagtcgaaat 1371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University