View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_high_4 (Length: 317)

Name: NF9501_high_4
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_high_4
NF9501_high_4
[»] chr8 (9 HSPs)
chr8 (1-293)||(9624261-9624570)
chr8 (192-287)||(54218-54315)
chr8 (159-287)||(29610981-29611112)
chr8 (168-244)||(7591382-7591459)
chr8 (168-287)||(15001514-15001636)
chr8 (168-284)||(10932787-10932905)
chr8 (168-244)||(30501238-30501315)
chr8 (168-244)||(41548711-41548788)
chr8 (159-287)||(16595076-16595206)
[»] chr5 (3 HSPs)
chr5 (159-287)||(4689615-4689746)
chr5 (162-222)||(14011173-14011233)
chr5 (165-244)||(26180217-26180297)
[»] scaffold0025 (1 HSPs)
scaffold0025 (168-244)||(5365-5442)
[»] chr7 (2 HSPs)
chr7 (168-244)||(1363733-1363810)
chr7 (159-244)||(21408539-21408625)
[»] chr4 (8 HSPs)
chr4 (168-244)||(26083435-26083512)
chr4 (168-244)||(50178405-50178482)
chr4 (168-244)||(50729455-50729532)
chr4 (162-222)||(9807273-9807334)
chr4 (168-244)||(11056138-11056215)
chr4 (176-244)||(20517943-20518012)
chr4 (176-244)||(36497313-36497382)
chr4 (168-244)||(44640419-44640496)
[»] chr3 (4 HSPs)
chr3 (168-244)||(19906856-19906933)
chr3 (168-244)||(41682967-41683044)
chr3 (168-244)||(3867563-3867640)
chr3 (168-244)||(50386370-50386447)
[»] chr1 (5 HSPs)
chr1 (168-244)||(42512765-42512842)
chr1 (159-227)||(47242502-47242571)
chr1 (162-214)||(7146892-7146945)
chr1 (168-244)||(7837235-7837312)
chr1 (159-244)||(31574456-31574541)
[»] chr2 (3 HSPs)
chr2 (159-222)||(83385-83449)
chr2 (168-237)||(6896268-6896338)
chr2 (159-222)||(38623215-38623279)
[»] chr6 (6 HSPs)
chr6 (170-244)||(9614067-9614142)
chr6 (168-287)||(18597117-18597239)
chr6 (168-244)||(10485250-10485327)
chr6 (162-206)||(14925170-14925215)
chr6 (162-222)||(14925409-14925470)
chr6 (165-244)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 9624570 - 9624261
Alignment:
Q  1 agaagatcataagatagaaaaataaacggtctaactctatatcatgttaaaaagcacgattga----------aagaaaacaaattgagagaaagatgaa 90  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||||||||||    
T  9624570 agaagatcataagatagaaaaataaacggtctaactctatatcatgttaaaaagcacgattgagcccaactaaaagaaaacaaattgagagaaagatgaa 9624471  T
Q  91 ttatttgagataagtcaaat-------atgatacaattaggtgcgtttgatctgctnnnnnnntgaagaacatggcatgacatgacaacttcagttgtac 183  Q
    | ||||||||||||||||||       |||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||    
T  9624470 tcatttgagataagtcaaatgaaaaatatgatacaattaggtgcgtttgatctgctaaaaaaatgaagaacatgacatgacatgacaacttcagttgtac 9624371  T
Q  184 actgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccataacacaacttt 283  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9624370 actgtttatttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacataaattttcgacccttgctaaaccacaacacaacttt 9624271  T
Q  284 ttgtttcatg 293  Q
    ||||||||||    
T  9624270 ttgtttcatg 9624261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 287
Target Start/End: Complemental strand, 54315 - 54218
Alignment:
Q  192 tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgctaaaccataacacaactttttgt 287  Q
    ||||||||| |||||||| |||| ||||| | ||| ||||| |||||||||||  |||||||||| | || ||||||||||| | |||||||||||||    
T  54315 tttgtaaaactgtttctgagacatgacaatccggacacaagggacatgacaaaaacataaatttttgtcctttgctaaaccacatcacaactttttgt 54218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 29610981 - 29611112
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaacat--aaattttc 255  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||| |||||| |   |||||||     
T  29610981 catgacagaacaacttcagttgtccaatgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacaggacaaaaactgaaattttt 29611080  T
Q  256 gacccttgctaaaccataacacaactttttgt 287  Q
    | |||| || |||||| |||||||||||||||    
T  29611081 gtccctcgccaaaccacaacacaactttttgt 29611112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 7591382 - 7591459
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  7591382 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 7591459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Complemental strand, 15001636 - 15001514
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttcgacccttgc 264  Q
    |||||||||||||| || |||||| ||||||||| |||||| |||||| ||||||| |||| ||| |||||  ||  ||||  ||||||| | ||||  |    
T  15001636 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaggacaaactggaggcaatagacagaacaaaaactgaaatttttgtccctcac 15001537  T
Q  265 taaaccataacacaactttttgt 287  Q
     |||||| |||||||||||||||    
T  15001536 caaaccacaacacaactttttgt 15001514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 284
Target Start/End: Complemental strand, 10932905 - 10932787
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaaca-taaattttcgacccttgct 265  Q
    |||||||||||||||   |||||| ||| ||||||||||| ||||||||||||||   ||| |||||||||||| ||| | |||| ||| | ||||  ||    
T  10932905 acaacttcagttgtatggtgtttgatttataaaattgtttatgggacaagacaaagtagaggcaagagacatgataaaaactaaaattttgtccctcact 10932806  T
Q  266 aaaccataacacaactttt 284  Q
    |||||| | ||||||||||    
T  10932805 aaaccacatcacaactttt 10932787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 30501315 - 30501238
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||  || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  30501315 acaacttcagttgcccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 30501238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 41548788 - 41548711
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| |  ||| ||||||| |||| ||||||||| ||||||    
T  41548788 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagatacatgacaaactggaggcaagagacaggacaaa 41548711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 16595076 - 16595206
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgac--aaacataaattttc 255  Q
    ||||||| ||||||  |||||||| | |||||| |||||||| ||||||||||||||  |||||| | || |||| |||| |||  |||||| || |||     
T  16595076 catgacaggacaacaccagttgtatattgtttgatttgtaaa-ttgtttctgggacagaacaaactgtaggcaagggacaggacaaaaacatgaagtttt 16595174  T
Q  256 gacccttgctaaaccataacacaactttttgt 287  Q
    | |||| ||||| ||| |||||||||||||||    
T  16595175 gtccctcgctaatccacaacacaactttttgt 16595206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 287
Target Start/End: Original strand, 4689615 - 4689746
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttc 255  Q
    |||||||  |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||  || | |||||     
T  4689615 catgacagaacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaaaacacatattttt 4689714  T
Q  256 gacccttgctaaaccataacacaactttttgt 287  Q
    | ||||  | |||||| |||||||||||||||    
T  4689715 gtccctcaccaaaccacaacacaactttttgt 4689746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14011173 - 14011233
Alignment:
Q  162 gacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaac 222  Q
    |||| |||||||||||||||||  |||||| |||| |||||||||  |||||| |||||||    
T  14011173 gacaggacaacttcagttgtactatgtttgattgtgaaattgttttagggacatgacaaac 14011233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 26180217 - 26180297
Alignment:
Q  165 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    ||||||||||||||| |||| | |||| ||||||||| ||||| ||||||| || |||  |||||||| ||| ||||||||    
T  26180217 atgacaacttcagttatacaatatttgatttgtaaaactgtttttgggacatgataaattggagacaaaagatatgacaaa 26180297  T

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Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 5365 - 5442
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||||||||||| |||| |||| |||| ||||||    
T  5365 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagggacaggacaaa 5442  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 1363810 - 1363733
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||||||||||  | ||| ||||||| |||| |||| |||||||||||    
T  1363810 acaacttcagttgtccagtgtttgatttgtaaaattgtttcatgtacaggacaaactggaggcaagggacatgacaaa 1363733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 244
Target Start/End: Original strand, 21408539 - 21408625
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||| ||  ||||||||| | |||| ||||||||  ||||| |||||||| |||||| |||| |||| |||||||||||    
T  21408539 catgacatgacatctctagttgtacaatatttgatttgtaaagctgtttttgggacaacacaaactggaggcaagggacatgacaaa 21408625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 26083512 - 26083435
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    ||||||||||||||  | |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||||||||||    
T  26083512 acaacttcagttgtttagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacatgacaaa 26083435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 50178405 - 50178482
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  50178405 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 50178482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 50729455 - 50729532
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||  |||||| |||| |||| |||||||||||    
T  50729455 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacagaacaaactggaggcaagggacatgacaaa 50729532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Complemental strand, 9807334 - 9807273
Alignment:
Q  162 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 222  Q
    |||| ||||||||||||||| || |||||| ||||||||| |||||| || |||||||||||    
T  9807334 gacaggacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaagacaaac 9807273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 11056215 - 11056138
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| |||| |||| ||||||    
T  11056215 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagggacaagacaaa 11056138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Original strand, 20517943 - 20518012
Alignment:
Q  176 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||| || |||||| ||||||||| |||||| || ||||||||||| |||| ||||||||| ||||||    
T  20517943 agttgttcagtgtttgatttgtaaaactgtttcaggtacaagacaaactggaggcaagagacaggacaaa 20518012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 244
Target Start/End: Complemental strand, 36497382 - 36497313
Alignment:
Q  176 agttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||| || |||||| ||||||||| |||||| || ||| ||||||| |||||||||||||| ||||||    
T  36497382 agttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggagacaagagacaggacaaa 36497313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 44640496 - 44640419
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    ||||||||||||||||| |||||| ||||||||| ||||| ||| | | |||||||  ||| ||||||||| ||||||    
T  44640496 acaacttcagttgtacagtgtttgatttgtaaaactgtttatggaaaatgacaaactagaggcaagagacaagacaaa 44640419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 19906933 - 19906856
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| |||||||||||||||| ||||||  |||||| |||| |||| |||| ||||||    
T  19906933 acaacttcagttgtccagtgtttgatttgtaaaattgtttcagggacagaacaaactggaggcaagggacaggacaaa 19906856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 41682967 - 41683044
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  41682967 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaagacaaa 41683044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 3867563 - 3867640
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||| ||||||| |  |||||| ||||||||| |||||| ||||||  ||| || |||||||||||||||||||||    
T  3867563 acaactccagttgtccggtgtttgatttgtaaaactgtttcagggacagaacatactggagacaagagacatgacaaa 3867640  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 50386370 - 50386447
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||| |||||||  | |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||||||||||    
T  50386370 acaactccagttgtctagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacatgacaaa 50386447  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 168 - 244
Target Start/End: Original strand, 42512765 - 42512842
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| ||||||| |||| ||||||||| ||||||    
T  42512765 acaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaactggaggcaagagacaggacaaa 42512842  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 227
Target Start/End: Original strand, 47242502 - 47242571
Alignment:
Q  159 catgacatgacaacttcagttgtacactgttt-gtttgtaaaattgtttctgggacaagacaaacgggag 227  Q
    ||||||||||||||||||||||||   |||||  ||||||||||||||| ||||||| ||||||| ||||    
T  47242502 catgacatgacaacttcagttgtatggtgtttaatttgtaaaattgtttatgggacatgacaaactggag 47242571  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 7146945 - 7146892
Alignment:
Q  162 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggaca 214  Q
    ||||| ||||||||||||||| | |||||| ||||||||||||||| |||||||    
T  7146945 gacataacaacttcagttgtatagtgtttgatttgtaaaattgtttttgggaca 7146892  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 7837312 - 7837235
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||  ||| |||| |||||||||||    
T  7837312 acaacttcagttgttcagtgtttgatttgtaaaactgtttcaggaacatgacaaactagaggcaagggacatgacaaa 7837235  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 244
Target Start/End: Complemental strand, 31574541 - 31574456
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttgtttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||||||||||||||||||||||| | ||  ||||||||| | ||||    |||| |||||| ||||| |||| ||||||||||    
T  31574541 catgacatgacaacttcagttgtacaattttgatttgtaaaactatttcaaaaacaaaacaaactggagataagaaacatgacaaa 31574456  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 222
Target Start/End: Complemental strand, 83449 - 83385
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 222  Q
    ||||||| |||||||||||||| ||| |||||| ||||||||| ||||| ||||||| |||||||    
T  83449 catgacaagacaacttcagttgcacagtgtttgatttgtaaaactgtttgtgggacatgacaaac 83385  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 6896338 - 6896268
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagaca 237  Q
    |||||||||||||| || |||||| ||||||||| |||||| ||||||| |||||| |||| |||| ||||    
T  6896338 acaacttcagttgtccagtgtttgatttgtaaaactgtttcagggacaaaacaaactggaggcaagggaca 6896268  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 222
Target Start/End: Original strand, 38623215 - 38623279
Alignment:
Q  159 catgacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 222  Q
    |||||||| |||||||||||| | || |||||| ||||||||| |||||| |||||| |||||||    
T  38623215 catgacataacaacttcagttatccaatgtttgatttgtaaaactgtttcagggacaggacaaac 38623279  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 170 - 244
Target Start/End: Complemental strand, 9614142 - 9614067
Alignment:
Q  170 aacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    ||||||||||||||| |||||| ||||||||| ||||||  ||||| || |||| |||| |||| |||||||||||    
T  9614142 aacttcagttgtacaatgtttgatttgtaaaactgtttcaaggacaggataaactggaggcaagggacatgacaaa 9614067  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 287
Target Start/End: Original strand, 18597117 - 18597239
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa--cataaattttcgacccttgc 264  Q
    |||| ||||||||| || |||||| ||||||||| |||||| |||| | ||||||| |||| |||| |||||||||||  |  ||||||| | ||||  |    
T  18597117 acaatttcagttgttcagtgtttgatttgtaaaactgtttcagggatatgacaaaccggaggcaagggacatgacaaaatctgaaatttttgtccctcac 18597216  T
Q  265 taaaccataacacaactttttgt 287  Q
     |||||| |||||||||||||||    
T  18597217 caaaccacaacacaactttttgt 18597239  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 244
Target Start/End: Complemental strand, 10485327 - 10485250
Alignment:
Q  168 acaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    |||||| ||||||| || |||||| ||||||||||| |||| || ||| ||||||| |||| ||||||||| ||||||    
T  10485327 acaactccagttgtccagtgtttgatttgtaaaattatttcaggtacaggacaaactggaggcaagagacaggacaaa 10485250  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 14925170 - 14925215
Alignment:
Q  162 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgttt 206  Q
    |||||||||||||||||||| || |||||| |||||||||||||||    
T  14925170 gacatgacaacttcagttgtccagtgtttgatttgtaaaattgttt 14925215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 222
Target Start/End: Original strand, 14925409 - 14925470
Alignment:
Q  162 gacatgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaac 222  Q
    |||||||||||||||||||| || |||||| ||||||||| |||||| || ||| |||||||    
T  14925409 gacatgacaacttcagttgtccagtgtttgatttgtaaaactgtttcaggtacaggacaaac 14925470  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 244
Target Start/End: Original strand, 35004084 - 35004164
Alignment:
Q  165 atgacaacttcagttgtacactgtttg-tttgtaaaattgtttctgggacaagacaaacgggagacaagagacatgacaaa 244  Q
    ||||||||| ||||||| |  |||||| |||||||||  |||| | |||||||| |||| |||||||||||||| ||||||    
T  35004084 atgacaactccagttgtgcggtgtttgatttgtaaaacggtttataggacaagataaaccggagacaagagacaagacaaa 35004164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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