View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_high_7 (Length: 278)
Name: NF9501_high_7
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 42433001 - 42432741
Alignment:
| Q |
1 |
ttagtctctaacgactcttgtcatttcgtctatcaacttcaaataaaataaaataaatgttacggctataaagaagtggctgagccagattccgtgttca |
100 |
Q |
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| T |
42433001 |
ttagtttctaacgactcttgtcatttcgtttatcaacttcaaataaaataaaataaatattacggctataaagaagtggctgagccagattccgtgttca |
42432902 |
T |
|
| Q |
101 |
atcttttagtgaactcttgagtctaaatgctattttagggtttgactcggtgtgacattgaattgcttgagtcacatgatgttgcataacatatctaatt |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42432901 |
atcttt-agtgaactcttgagtctaaatgctattttagggtttgactcggtgtgacattgaattgcttgagtcacatgatgttgcataacatatctaatt |
42432803 |
T |
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| Q |
201 |
taacggttttgattaaagaggtatctaacagatttaatttaattttaaaataaacaaattac |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42432802 |
taacggttttgattaaagaggtatctaacagatttaatttaattttaaaataaacaaattac |
42432741 |
T |
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