View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9501_low_1 (Length: 701)
Name: NF9501_low_1
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_1 |
 | |
|
| [»] chr6 (31 HSPs) |
| |
|
| [»] scaffold0288 (2 HSPs) |
| |
|
| [»] scaffold0199 (1 HSPs) |
| |
|
| [»] chr8 (2 HSPs) |
| |
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| [»] chr3 (5 HSPs) |
| |
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| [»] scaffold0475 (1 HSPs) |
| |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 657; Significance: 0; HSPs: 31)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 657; E-Value: 0
Query Start/End: Original strand, 17 - 701
Target Start/End: Complemental strand, 4604217 - 4603533
Alignment:
| Q |
17 |
agagcaacaattcaacaccgttataatgagtattaaccggtaggtcgattgatgagtaaagtaaaggttccaaattttaaatctaagaactaaatgtact |
116 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4604217 |
agagcaacaattcaacaccgttatgatgagtattaaccggtaggtcgattgatgagtaaagtaaaggttccaaattttaaatctaagaactaaatgtact |
4604118 |
T |
|
| Q |
117 |
accaacatagtaacatttgcctatgaaaatacaaacgctgtagcagcgacacttttgataagagatgtatttgatgtcggacatgtgttgttgtacgttt |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4604117 |
accaacatagtaacatttgcctatgaaaatacaaacgatgtagcagcgacacttttgataagagatgtatttgatgttggacatgtgttgttgtacgttt |
4604018 |
T |
|
| Q |
217 |
gacaccaacacaggtaagtacagtcaattaatcatgttttcatcttagttattaccggtatggatgtgtgaatgttgtattcctgtccttgtatgtatgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4604017 |
gacaccaacacaggtaagtacagtcaattaatcatgttttcatcttaattattaccggtatggacgtgtgaatgttgtattcttgtccttgtatgtatgt |
4603918 |
T |
|
| Q |
317 |
ccatgcttcacatcattgttgtgatagccaaattaaaaattgagttggatgaacttatttcactttgttagaatctcaacctcccagattttatctcttt |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603917 |
ccatgcttcacatcattgttgtgatagccaaattaaaaattgagttggatgaacttatttcactttgttagaatctcaacctcccagattttatctcttt |
4603818 |
T |
|
| Q |
417 |
ggatttctttgtatttttcaattttgtagcattgtcatttattctctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcaca |
516 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603817 |
ggatttctttgtattttccaattttgtagcattgtcatttattctctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcaca |
4603718 |
T |
|
| Q |
517 |
cataatatccaaatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatcc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603717 |
cataatatccaaatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatcc |
4603618 |
T |
|
| Q |
617 |
aatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603617 |
aatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
4603533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 385 - 701
Target Start/End: Complemental strand, 4619039 - 4618724
Alignment:
| Q |
385 |
tagaatctcaacctcccagattttatctctttggatttcttt-gtatttttcaattttgtagcattgtcatttattctct-ctattaatgcacatgctta |
482 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |||| ||||| ||| || ||| ||||||| ||||||||||| |
|
|
| T |
4619039 |
tagaatctcaacctcccagattttatttgtttggatttcttttgtattttccaattttatagcgttgtccttttttttcttctattaaagcacatgctta |
4618940 |
T |
|
| Q |
483 |
ttatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgt |
582 |
Q |
| |
|
| |||||||| ||||||||||| ||||| |||||| ||| ||| | | ||||| | |||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
4618939 |
t---cacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaaactttgcaaacagaaaaccacatgttgtga |
4618843 |
T |
|
| Q |
583 |
tgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaata |
682 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
4618842 |
tgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgttaacaccgaata |
4618743 |
T |
|
| Q |
683 |
caatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||| |||||| |
|
|
| T |
4618742 |
caatcacaaacgcttgctc |
4618724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 394 - 700
Target Start/End: Complemental strand, 4565756 - 4565453
Alignment:
| Q |
394 |
aacctcccagattttatctctttggatttctttgtatttttcaattttgtagcattgtcatttattctctctattaatgcacatgcttattatcacttgt |
493 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||| ||| |||||||||| || |||||||| ||| ||||||| |
|
|
| T |
4565756 |
aacctcccagaatttatctgtttggatttctttatatttttcaattttgtagcattgtccttttttctctctataaaagcacatgcctat---cacttgt |
4565660 |
T |
|
| Q |
494 |
tcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgttgattccatat |
593 |
Q |
| |
|
| ||||||||||||| ||||||| |||| || |||| |||||| | | || ||||||| |||||||||||||||| ||||||||||||||||||| | |
|
|
| T |
4565659 |
ttttcaacctcatatcttgcacaaataacatacaaacagaaaaatttcaaagatgggaagttttgcaaacagaaaaccacatgctgtgttgattccagct |
4565560 |
T |
|
| Q |
594 |
ccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatcacaaac |
693 |
Q |
| |
|
||| ||||||| ||||| |||||| |||| ||||| |||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
4565559 |
ccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttgtcaacactgaatacaatcataaac |
4565460 |
T |
|
| Q |
694 |
gtttgct |
700 |
Q |
| |
|
| ||||| |
|
|
| T |
4565459 |
gattgct |
4565453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 394 - 701
Target Start/End: Complemental strand, 4594744 - 4594433
Alignment:
| Q |
394 |
aacctcccagattttatctctttggatttctttgtatttttcaattttgtagcattgtcatttattct--ctctattaatgcacatgcttattatcactt |
491 |
Q |
| |
|
||||| |||||||||| || ||||||||||||| |||||||||||||| ||||| | || ||| || | ||||||||| || |||| |||| ||||| |
|
|
| T |
4594744 |
aaccttccagattttaactgtttggatttctttatatttttcaattttatagcaatttccttttttttttctctattaaagcccatgtttat---cactt |
4594648 |
T |
|
| Q |
492 |
gttcttcaacctcatattttgcacacataatatcca-----aatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgttgat |
586 |
Q |
| |
|
||| |||||||| ||| |||||||||||| | | |||||| ||||| | || ||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4594647 |
gtttctcaacctcgtatcttgcacacataacaataacattcaatagagaattatcaaagatgggaaactttgcaaacagaaaaccacatgctgtgttgat |
4594548 |
T |
|
| Q |
587 |
tccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaat |
686 |
Q |
| |
|
|||| |||||||||||| ||||| |||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
4594547 |
tccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttgtcaacactgaatacaat |
4594448 |
T |
|
| Q |
687 |
cacaaacgtttgctc |
701 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
4594447 |
cataaacgtttgctc |
4594433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 557 - 701
Target Start/End: Original strand, 4513540 - 4513684
Alignment:
| Q |
557 |
tgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggattt |
656 |
Q |
| |
|
||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| ||||||||||||| ||| |
|
|
| T |
4513540 |
tgcaagcagaaaaccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggcttt |
4513639 |
T |
|
| Q |
657 |
cacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4513640 |
cacataacctttgttaacaccgaatacaatcacaaacgtttgctc |
4513684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 572 - 701
Target Start/End: Complemental strand, 4627702 - 4627573
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
4627702 |
acatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacctttgtc |
4627603 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
4627602 |
aacactgaatacaatcacaaacgtttgctc |
4627573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 552 - 701
Target Start/End: Complemental strand, 3173575 - 3173426
Alignment:
| Q |
552 |
aactttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagag |
651 |
Q |
| |
|
||||||||||| ||||||| |||||| ||||| | |||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||| |||||| |
|
|
| T |
3173575 |
aactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaactacttcactttagag |
3173476 |
T |
|
| Q |
652 |
gatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
| ||||||||||||||||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
3173475 |
gctttcacataacctttgtaaacactgaatacaatcacaaacggttgctc |
3173426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 566 - 701
Target Start/End: Complemental strand, 4558683 - 4558548
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
665 |
Q |
| |
|
||||| |||||||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
4558683 |
aaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcacataacc |
4558584 |
T |
|
| Q |
666 |
tttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
| ||| ||||| |||||||| |||||||| |||||| |
|
|
| T |
4558583 |
tatgtaaacactgaatacaaccacaaacggttgctc |
4558548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 555 - 701
Target Start/End: Complemental strand, 4507480 - 4507334
Alignment:
| Q |
555 |
tttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggat |
654 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| || || |||||||| |||| | |
|
|
| T |
4507480 |
tttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagcttcttcaccttcgaggct |
4507381 |
T |
|
| Q |
655 |
ttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |||||| |
|
|
| T |
4507380 |
ttcacataacctttgttaacaccgaatacaatcacaaacgcttgctc |
4507334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 552 - 700
Target Start/End: Complemental strand, 4482437 - 4482289
Alignment:
| Q |
552 |
aactttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagag |
651 |
Q |
| |
|
||||||||| | | ||||| |||||| ||||||| ||||| |||| |||||||||||||||| || |||||||| ||| ||||||| |||||||||||| |
|
|
| T |
4482437 |
aactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaactacttcaccttagag |
4482338 |
T |
|
| Q |
652 |
gatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgct |
700 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4482337 |
gctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgct |
4482289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 587 - 701
Target Start/End: Complemental strand, 4517877 - 4517763
Alignment:
| Q |
587 |
tccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaat |
686 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
4517877 |
tccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacctttgtcaacaccgaatacaat |
4517778 |
T |
|
| Q |
687 |
cacaaacgtttgctc |
701 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4517777 |
cacaaacgtttgctc |
4517763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 588 - 701
Target Start/End: Original strand, 4488789 - 4488902
Alignment:
| Q |
588 |
ccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaatacaatc |
687 |
Q |
| |
|
|||| |||| ||||||||||||||||| || |||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
4488789 |
ccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggatttcacataacctttgtcaacactgaatacaatc |
4488888 |
T |
|
| Q |
688 |
acaaacgtttgctc |
701 |
Q |
| |
|
||||||| |||||| |
|
|
| T |
4488889 |
acaaacgcttgctc |
4488902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 555 - 691
Target Start/End: Complemental strand, 4462776 - 4462640
Alignment:
| Q |
555 |
tttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggat |
654 |
Q |
| |
|
|||||||| | ||| | |||||||||||||||||||| |||| ||||||||||||||| || |||||||||||| ||||||| ||||||||||||| | |
|
|
| T |
4462776 |
tttgcaaagacaaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggtt |
4462677 |
T |
|
| Q |
655 |
ttcacataacctttgtcaacaccgaatacaatcacaa |
691 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4462676 |
ttcacataacctttgtcaacactgaatacaatcacaa |
4462640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 566 - 701
Target Start/End: Complemental strand, 4572524 - 4572389
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
665 |
Q |
| |
|
||||| |||||||||||| || ||||||||| |||||||||||||||||||| ||||| ||||||||||| | ||||||||||||| |||||||||||| |
|
|
| T |
4572524 |
aaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcacataacc |
4572425 |
T |
|
| Q |
666 |
tttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
| ||| ||||| ||||||||||||||||| |||||| |
|
|
| T |
4572424 |
tatgtaaacactgaatacaatcacaaacggttgctc |
4572389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 573 - 700
Target Start/End: Complemental strand, 4587183 - 4587056
Alignment:
| Q |
573 |
catgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtca |
672 |
Q |
| |
|
||||||||||| || |||| |||| |||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||||||| | |
|
|
| T |
4587183 |
catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa |
4587084 |
T |
|
| Q |
673 |
acaccgaatacaatcacaaacgtttgct |
700 |
Q |
| |
|
|||| ||||||||||||||||| ||||| |
|
|
| T |
4587083 |
acactgaatacaatcacaaacggttgct |
4587056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 566 - 701
Target Start/End: Original strand, 4612288 - 4612423
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
665 |
Q |
| |
|
||||| |||||| ||||| |||||||||||| |||||||||||||||||||| | | |||||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
4612288 |
aaaaccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataaca |
4612387 |
T |
|
| Q |
666 |
tttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|| |||||||||||||||||||||||||| |||||| |
|
|
| T |
4612388 |
ttcgtcaacaccgaatacaatcacaaacgcttgctc |
4612423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 4258752 - 4258881
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| || || ||||| ||| ||| |||||||||||||||||| |
|
|
| T |
4258752 |
acatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagctaagcttcttcactttaaaggttttcacataacctttgtc |
4258851 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||| ||||| |||||||||||||||||| |
|
|
| T |
4258852 |
aacactgaatataatcacaaacgtttgctc |
4258881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 572 - 701
Target Start/End: Complemental strand, 4576007 - 4575878
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
|||||| ||||| | ||||| |||| ||||||||||||||||| || |||||||| |||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
4576007 |
acatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataacctttgtt |
4575908 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||| |||||||||||||||||||||||| |
|
|
| T |
4575907 |
aacactgaatacaatcacaaacgtttgctc |
4575878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 572 - 701
Target Start/End: Complemental strand, 4581566 - 4581437
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||| |||| | | | ||||||||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
4581566 |
acatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcaccttagaggctttcacataacctttgtc |
4581467 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
4581466 |
aacaccgaatacaatcacaaacgcttgctc |
4581437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 4265633 - 4265762
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||||||||||| || |||| || |||| ||| || ||||||||||||| |||||||||||||||||| |
|
|
| T |
4265633 |
acatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacctttgtc |
4265732 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||| ||||||||||||||||| |||||| |
|
|
| T |
4265733 |
aacactgaatacaatcacaaacgcttgctc |
4265762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 555 - 692
Target Start/End: Complemental strand, 4471483 - 4471346
Alignment:
| Q |
555 |
tttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggat |
654 |
Q |
| |
|
|||||||| | ||| | ||||||||| |||||||||| |||| |||||||||||||||| || |||||||||||||||| || ||||||||||||| | |
|
|
| T |
4471483 |
tttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagcttcttcaccttagaggct |
4471384 |
T |
|
| Q |
655 |
ttcacataacctttgtcaacaccgaatacaatcacaaa |
692 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||| |
|
|
| T |
4471383 |
ttcacataacgtttgtcaacactgaatacaatcacaaa |
4471346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 587 - 680
Target Start/End: Complemental strand, 4569607 - 4569514
Alignment:
| Q |
587 |
tccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaa |
680 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccgaa |
4569514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 572 - 701
Target Start/End: Complemental strand, 4623859 - 4623730
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||| |||||||||||| |||| ||||||||||| || || |||||| ||| |||||||||||||||| |
|
|
| T |
4623859 |
acatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaaactagcaaagcttctttaccttaaaggctttcacataacctttggt |
4623760 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
4623759 |
cacaccgaatacaatcacaaacgcttgctc |
4623730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 587 - 700
Target Start/End: Complemental strand, 4562199 - 4562085
Alignment:
| Q |
587 |
tccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataa-cctttgtcaacaccgaatacaa |
685 |
Q |
| |
|
||||| |||| ||||||| ||||||||| || |||||||| |||||||||| ||||||| ||||| |||||||||| ||||||| ||||| |||||||| |
|
|
| T |
4562199 |
tccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcacataaacctttgttaacactgaatacaa |
4562100 |
T |
|
| Q |
686 |
tcacaaacgtttgct |
700 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
4562099 |
tcacaaacgtttgct |
4562085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 646 - 701
Target Start/End: Original strand, 4502943 - 4502998
Alignment:
| Q |
646 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4502943 |
ttagaggatttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctc |
4502998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 572 - 701
Target Start/End: Original strand, 4255397 - 4255514
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| | | || |||||||||||| || |||| |||| ||| ||||||| |
|
|
| T |
4255397 |
acatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaactagcaaaattacttcatcttaaagg------------ctttgtc |
4255484 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
||||||||||||||||||||||| |||||| |
|
|
| T |
4255485 |
aacaccgaatacaatcacaaacgcttgctc |
4255514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 566 - 701
Target Start/End: Complemental strand, 4599721 - 4599586
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
665 |
Q |
| |
|
||||| |||||| || |||||||||| ||| ||||||| ||||||||| | | | ||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
4599721 |
aaaactacatgcagtattgattccattaccaattcaaggaaatatcaatctattaatcaaactagcaaagattcttcaccttagaggattttacataacc |
4599622 |
T |
|
| Q |
666 |
tttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|| || |||||||| |||||||||||||| |||||| |
|
|
| T |
4599621 |
ttcgtgaacaccgagtacaatcacaaacgcttgctc |
4599586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 49 - 122
Target Start/End: Complemental strand, 4619355 - 4619282
Alignment:
| Q |
49 |
ttaaccggtaggtcgattgatgagtaaagtaaaggttccaaattttaaatctaagaactaaatgtactaccaac |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
4619355 |
ttaaccggtaggtcgcttgatgagtaaagtaaaggttaaaaaatttaactctaaaacctaaatgtactaccaac |
4619282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 572 - 650
Target Start/End: Original strand, 4497821 - 4497899
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttaga |
650 |
Q |
| |
|
|||||| ||||| | ||||| |||| || ||||||||||||||||| |||||||||||| |||| || ||||||||||| |
|
|
| T |
4497821 |
acatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaattacttcaccttaga |
4497899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 563 - 628
Target Start/End: Complemental strand, 4493466 - 4493401
Alignment:
| Q |
563 |
cagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaact |
628 |
Q |
| |
|
|||||||| |||||| ||||||||||||| |||| |||||| ||||||||| ||||| ||||||| |
|
|
| T |
4493466 |
cagaaaaccacatgcagtgttgattccatttccagctcaaggtcatatcaatgcaatgctgaaact |
4493401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 566 - 614
Target Start/End: Complemental strand, 4472664 - 4472616
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaat |
614 |
Q |
| |
|
||||| |||||| ||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
4472664 |
aaaaccacatgcagtgttgattccatgtccaccccaaggccatatcaat |
4472616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 153; Significance: 1e-80; HSPs: 2)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 385 - 701
Target Start/End: Original strand, 1841 - 2156
Alignment:
| Q |
385 |
tagaatctcaacctcccagattttatctctttggatttcttt-gtatttttcaattttgtagcattgtcatttattctct-ctattaatgcacatgctta |
482 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||| |||| ||||| ||| || ||| ||||||| ||||||||||| |
|
|
| T |
1841 |
tagaatctcaacctcccagattttatttgtttggatttcttttgtattttccaattttatagcgttgtccttttttttcttctattaaagcacatgctta |
1940 |
T |
|
| Q |
483 |
ttatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgcaaacagaaaacaacatgctgtgt |
582 |
Q |
| |
|
| |||||||| ||||||||||| ||||| |||||| ||| ||| | | ||||| | |||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
1941 |
t---cacttgtttctcaacctcataacttgcaaacataacatcaaaagatagaattatcaaaaatgggaaactttgcaaacagaaaaccacatgttgtga |
2037 |
T |
|
| Q |
583 |
tgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtcaacaccgaata |
682 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||| ||||||||||| || ||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
2038 |
tgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttgtcaacactgaata |
2137 |
T |
|
| Q |
683 |
caatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||| ||||| |||||| |
|
|
| T |
2138 |
caatcataaacgcttgctc |
2156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 49 - 122
Target Start/End: Original strand, 1523 - 1597
Alignment:
| Q |
49 |
ttaaccggtaggtcgattgatgagtaaagtaaaggtt-ccaaattttaaatctaagaactaaatgtactaccaac |
122 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| ||| ||||| ||||| | ||||||||||||||||| |
|
|
| T |
1523 |
ttaaccggtaggtcgcttgatgagtaaagtaaaggttaaaaaaatttaactctaaaacctaaatgtactaccaac |
1597 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 136; Significance: 1e-70; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 460 - 701
Target Start/End: Complemental strand, 1419 - 1181
Alignment:
| Q |
460 |
ctctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgc |
559 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
1419 |
ctctctattaaagcacatgcttat---cacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgc |
1323 |
T |
|
| Q |
560 |
aaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcac |
659 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||| | ||| |
|
|
| T |
1322 |
aaacagaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcat |
1223 |
T |
|
| Q |
660 |
ataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
1222 |
gtaacctatgtcaacactgaatacaatcacaaacgtttgctc |
1181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 460 - 701
Target Start/End: Complemental strand, 1676182 - 1675944
Alignment:
| Q |
460 |
ctctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgc |
559 |
Q |
| |
|
||||||||||| |||||||||||| |||||||| |||||||||||| |||||||||||| ||||||||||| ||||| | ||||||||||||||||| |
|
|
| T |
1676182 |
ctctctattaaagcacatgcttat---cacttgtttctcaacctcatatcttgcacacataacatccaaatagataattatcaaaaatgggaaactttgc |
1676086 |
T |
|
| Q |
560 |
aaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcac |
659 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||| ||||||||||||| | ||| |
|
|
| T |
1676085 |
aaacagaaaatcacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcat |
1675986 |
T |
|
| Q |
660 |
ataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
1675985 |
gtaacctatgtcaacactgaatacaatcacaaacgtttgctc |
1675944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 566 - 700
Target Start/End: Original strand, 20862380 - 20862514
Alignment:
| Q |
566 |
aaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacc |
665 |
Q |
| |
|
||||| |||||| ||||| | |||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||| ||| ||||||| |
|
|
| T |
20862380 |
aaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttcaccttagaggcttttacataaca |
20862479 |
T |
|
| Q |
666 |
tttgtcaacaccgaatacaatcacaaacgtttgct |
700 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| |
|
|
| T |
20862480 |
tttgtcaatactgaatacaatcacaaacgcttgct |
20862514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 127; Significance: 3e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 461 - 701
Target Start/End: Complemental strand, 1283093 - 1282856
Alignment:
| Q |
461 |
tctctattaatgcacatgcttattatcacttgttcttcaacctcatattttgcacacataatatccaaatagaaaattaactaaaatgggaaactttgca |
560 |
Q |
| |
|
|||||||||| |||||||||||| |||||||| |||||||||||| |||||| ||||| |||||| |||| ||||| | ||||||| ||||||||| |
|
|
| T |
1283093 |
tctctattaaagcacatgcttat---cacttgtttctcaacctcatatcttgcacgcataacatccaagtagagaattatcaaaaatggtcaactttgca |
1282997 |
T |
|
| Q |
561 |
aacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcaca |
660 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||||||||| ||| ||| |
|
|
| T |
1282996 |
aacacaaaaccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttaca |
1282897 |
T |
|
| Q |
661 |
taacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||| || || ||||||||||||||||| |||||| |
|
|
| T |
1282896 |
taacctttgttaatactgaatacaatcacaaacgcttgctc |
1282856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 35776316 - 35776272
Alignment:
| Q |
654 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
698 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
35776316 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35776272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 35842123 - 35842079
Alignment:
| Q |
654 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
698 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
35842123 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35842079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 35854631 - 35854587
Alignment:
| Q |
654 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
698 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
35854631 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35854587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 654 - 698
Target Start/End: Complemental strand, 35869240 - 35869196
Alignment:
| Q |
654 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgtttg |
698 |
Q |
| |
|
||||||||||||||||| ||||| |||| ||| |||||||||||| |
|
|
| T |
35869240 |
tttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35869196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 95; Significance: 4e-46; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 555 - 701
Target Start/End: Complemental strand, 2393 - 2247
Alignment:
| Q |
555 |
tttgcaaacagaaaacaacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggat |
654 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||| | || ||||||||||| || ||||||||||||| | |
|
|
| T |
2393 |
tttgcaaacaaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggct |
2294 |
T |
|
| Q |
655 |
ttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
2293 |
ttcacataacctttgtcaacactgaatacaatcataaacgcttgctc |
2247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 2e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 572 - 700
Target Start/End: Complemental strand, 3088297 - 3088169
Alignment:
| Q |
572 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
671 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
3088297 |
acatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagcaaaacttcttcaccttaaaggctttcacataacctttgtc |
3088198 |
T |
|
| Q |
672 |
aacaccgaatacaatcacaaacgtttgct |
700 |
Q |
| |
|
|| ||||||||||||||||| |||||||| |
|
|
| T |
3088197 |
aataccgaatacaatcacaaccgtttgct |
3088169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 573 - 701
Target Start/End: Complemental strand, 24104646 - 24104518
Alignment:
| Q |
573 |
catgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtca |
672 |
Q |
| |
|
|||||||||||||||||| |||| ||||||| ||||||||| || |||| ||||||| ||| || ||||||||||||| |||||||||||||| || | |
|
|
| T |
24104646 |
catgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataaccttcgtga |
24104547 |
T |
|
| Q |
673 |
acaccgaatacaatcacaaacgtttgctc |
701 |
Q |
| |
|
|||||||||||||||||||||| |||||| |
|
|
| T |
24104546 |
acaccgaatacaatcacaaacgcttgctc |
24104518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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