View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_10 (Length: 428)

Name: NF9501_low_10
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_10
NF9501_low_10
[»] chr5 (12 HSPs)
chr5 (204-418)||(36580121-36580334)
chr5 (17-135)||(36580324-36580442)
chr5 (238-299)||(6702386-6702447)
chr5 (243-306)||(19402005-19402068)
chr5 (241-290)||(17644604-17644653)
chr5 (243-306)||(1145150-1145213)
chr5 (186-236)||(17644530-17644580)
chr5 (186-228)||(1145806-1145848)
chr5 (186-232)||(7164279-7164325)
chr5 (206-264)||(17344802-17344860)
chr5 (186-232)||(40266537-40266583)
chr5 (238-290)||(30491796-30491848)
[»] chr2 (8 HSPs)
chr2 (17-131)||(2831007-2831121)
chr2 (243-306)||(12967279-12967343)
chr2 (243-304)||(37893014-37893075)
chr2 (243-292)||(11712981-11713030)
chr2 (243-306)||(12969270-12969332)
chr2 (251-306)||(20685015-20685070)
chr2 (211-266)||(28360074-28360129)
chr2 (238-306)||(25678281-25678349)
[»] chr1 (12 HSPs)
chr1 (17-155)||(42883576-42883715)
chr1 (243-306)||(3792569-3792632)
chr1 (243-315)||(45691054-45691126)
chr1 (243-315)||(45691196-45691268)
chr1 (243-315)||(45691338-45691410)
chr1 (243-306)||(11821169-11821232)
chr1 (243-306)||(45688317-45688380)
chr1 (206-266)||(10884458-10884518)
chr1 (238-306)||(33403127-33403195)
chr1 (230-306)||(39650205-39650281)
chr1 (206-267)||(42883723-42883784)
chr1 (188-236)||(5603112-5603160)
[»] chr7 (9 HSPs)
chr7 (243-306)||(38790893-38790957)
chr7 (186-236)||(149052-149102)
chr7 (238-306)||(44552703-44552771)
chr7 (260-303)||(26502454-26502497)
chr7 (260-303)||(26590217-26590260)
chr7 (243-298)||(26604179-26604234)
chr7 (252-298)||(38792063-38792109)
chr7 (230-306)||(1537239-1537315)
chr7 (186-238)||(15819786-15819838)
[»] chr3 (17 HSPs)
chr3 (243-319)||(6162688-6162764)
chr3 (186-298)||(11342907-11343019)
chr3 (238-306)||(19866742-19866810)
chr3 (243-306)||(53827667-53827730)
chr3 (237-315)||(7666962-7667040)
chr3 (238-300)||(34086841-34086903)
chr3 (243-292)||(30533884-30533933)
chr3 (269-309)||(3860252-3860292)
chr3 (238-306)||(15042007-15042075)
chr3 (243-287)||(39688758-39688802)
chr3 (243-291)||(42947399-42947447)
chr3 (243-291)||(50663899-50663947)
chr3 (251-306)||(4969884-4969939)
chr3 (231-306)||(53814555-53814630)
chr3 (243-306)||(11343803-11343867)
chr3 (243-287)||(47064892-47064936)
chr3 (243-287)||(54528962-54529006)
[»] chr4 (13 HSPs)
chr4 (243-306)||(33164511-33164574)
chr4 (243-306)||(36172174-36172237)
chr4 (243-298)||(36174585-36174640)
chr4 (243-306)||(55523734-55523797)
chr4 (237-306)||(12572819-12572888)
chr4 (186-303)||(38676951-38677068)
chr4 (243-306)||(28798151-28798214)
chr4 (243-286)||(36217899-36217942)
chr4 (243-306)||(40450940-40451003)
chr4 (243-298)||(53265809-53265864)
chr4 (166-204)||(40361676-40361714)
chr4 (230-299)||(33161646-33161715)
chr4 (238-306)||(24972399-24972467)
[»] chr8 (5 HSPs)
chr8 (255-306)||(9448715-9448766)
chr8 (243-306)||(23558989-23559052)
chr8 (243-306)||(33220793-33220856)
chr8 (186-238)||(17875313-17875365)
chr8 (214-266)||(1349196-1349248)
[»] chr6 (5 HSPs)
chr6 (238-317)||(17436034-17436113)
chr6 (186-236)||(807132-807182)
chr6 (230-306)||(14153363-14153439)
chr6 (243-299)||(806561-806617)
chr6 (166-202)||(19405358-19405394)
[»] scaffold1763 (1 HSPs)
scaffold1763 (243-299)||(370-426)
[»] scaffold0041 (1 HSPs)
scaffold0041 (238-298)||(24366-24426)


Alignment Details
Target: chr5 (Bit Score: 113; Significance: 4e-57; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 204 - 418
Target Start/End: Complemental strand, 36580334 - 36580121
Alignment:
Q  204 aacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataa 303  Q
    |||||| ||||||||||||||||||||||||||||||| |||||||| |||||| ||||||| | ||||| |||   ||| |||| ||| ||||   |||    
T  36580334 aacgtgagttaactcatgcaaatttaacactagtgcaagttaacatgtgtagggatattttgaacttttattttagaaataagcggaaccatttaagtaa 36580235  T
Q  304 tgaacaagattcatagatttacgtgtcaaaagcaaacttacgttgagtttgattatgctttgaagattttccnnnnnnncttattgggcttgggttatat 403  Q
    ||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  36580234 tgagcagaattcatagatttacgtgtcaaaagcaaacttacgttgagtttgattatgctttgaagattttcc-ttttttcttattgggcttgggttatat 36580136  T
Q  404 ccacccttgtctgtg 418  Q
    |||||||||||||||    
T  36580135 ccacccttgtctgtg 36580121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 17 - 135
Target Start/End: Complemental strand, 36580442 - 36580324
Alignment:
Q  17 aaatgtgatgataagtgccaaaacatagcaattgttttctgacaaaaattaaagtgccacaacttttgtataatattgaaacaacatgaaaaaatgcaag 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||    
T  36580442 aaatgtgatgataagtgccaaaacatagcaattgttttctgacaaaaattaaaatgccacaacttttgtatgatattgaaacaacatgacaaaatgcaag 36580343  T
Q  117 ctaaaaccaacgtgagtta 135  Q
    ||||||| |||||||||||    
T  36580342 ctaaaactaacgtgagtta 36580324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 238 - 299
Target Start/End: Complemental strand, 6702447 - 6702386
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 299  Q
    |||| |||||||||||| ||| ||||| || |||||||||||||||||||||||||||||||    
T  6702447 gcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcgaaactatttgg 6702386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 19402005 - 19402068
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||| ||| |||||||| |||||||||||||||||| ||||| |||||| ||||||    
T  19402005 ttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaatga 19402068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 17644604 - 17644653
Alignment:
Q  241 aattaacatgcgtaggggtattttggatttttactttgagaatgagcgaa 290  Q
    |||||||||||||||||||||||||||  ||||||||| |||||||||||    
T  17644604 aattaacatgcgtaggggtattttggacatttactttgggaatgagcgaa 17644653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 1145213 - 1145150
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||||||||| || |||||||   ||||||||| |||||||||||||| ||||||||||||    
T  1145213 ttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttggataatga 1145150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 17644530 - 17644580
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 236  Q
    |||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  17644530 gcgtgatttaagtcacgcagcgtgagttaactcatgtaaatttaacactag 17644580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 1145806 - 1145848
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaattt 228  Q
    |||||||||||| |||||| |||| ||||||||||||||||||    
T  1145806 gcgtgacttaagacacgcagcgtgagttaactcatgcaaattt 1145848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Complemental strand, 7164325 - 7164279
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaaca 232  Q
    ||||||||||||||||||  ||||  |||||||||||||||||||||    
T  7164325 gcgtgacttaagtcacgcggcgtgaattaactcatgcaaatttaaca 7164279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 264
Target Start/End: Original strand, 17344802 - 17344860
Alignment:
Q  206 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtatttt 264  Q
    |||| ||||||||| ||||| |||||||||| |  | ||||||||||||||||||||||    
T  17344802 cgtgagttaactcacgcaaaattaacactagcgtgagttaacatgcgtaggggtatttt 17344860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 40266537 - 40266583
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaaca 232  Q
    ||||||||||||||||| | |||| ||||||||| ||||||||||||    
T  40266537 gcgtgacttaagtcacgtagcgtgagttaactcacgcaaatttaaca 40266583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 30491796 - 30491848
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaa 290  Q
    |||| |||||||||||||||  ||||| || |||||||||| |||||||||||    
T  30491796 gcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcgaa 30491848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 99; Significance: 1e-48; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 17 - 131
Target Start/End: Complemental strand, 2831121 - 2831007
Alignment:
Q  17 aaatgtgatgataagtgccaaaacatagcaattgttttctgacaaaaattaaagtgccacaacttttgtataatattgaaacaacatgaaaaaatgcaag 116  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||    
T  2831121 aaatgtgatgataagtgccaaagcatagcaattgttttctgacaaaaattaaagtgccacaacttttgtatgatattaaaacaacatgacaaaatgcaag 2831022  T
Q  117 ctaaaaccaacgtga 131  Q
    |||||||||||||||    
T  2831021 ctaaaaccaacgtga 2831007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 12967343 - 12967279
Alignment:
Q  243 ttaacatgcgtaggggtattttgga-tttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||| | ||||||    
T  12967343 ttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatga 12967279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 243 - 304
Target Start/End: Original strand, 37893014 - 37893075
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataat 304  Q
    ||||||||| |||||| |||||||| |||||||||| ||||||||||||| |||||| ||||    
T  37893014 ttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaat 37893075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Complemental strand, 11713030 - 11712981
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaac 292  Q
    ||||||| |||||||| |||||||| |||||||||| |||||||||||||    
T  11713030 ttaacatacgtaggggcattttggacttttactttgggaatgagcgaaac 11712981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 12969270 - 12969332
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||| ||| |||| ||||||||    
T  12969270 ttaacatgcgtaggggcattttgaacttttactttg-gaatgagcggaaccatttagataatga 12969332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 20685070 - 20685015
Alignment:
Q  251 cgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| ||||||||| || |||||||||||||||||||| ||| |||||| ||||||    
T  20685070 cgtaagggtattttagacttttactttgagaatgagcggaaccatttgggtaatga 20685015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 266
Target Start/End: Complemental strand, 28360129 - 28360074
Alignment:
Q  211 gttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 266  Q
    ||||||||| |||||||||||||||| |  | ||||||||||||| ||||||||||    
T  28360129 gttaactcacgcaaatttaacactagcgtgagttaacatgcgtagaggtattttgg 28360074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 25678349 - 25678281
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| ||||||||  |||| | ||||| || ||||||||||| ||||||||| ||| ||||||||||||    
T  25678349 gcaagttaacatgtttaggagcatttttgacttttactttgaaaatgagcgatactgtttggataatga 25678281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 17 - 155
Target Start/End: Original strand, 42883576 - 42883715
Alignment:
Q  17 aaatgtgatgataagtgccaaaacatagcaattgttttctgacaaaaattaaagtgccacaacttttgtataatattgaaacaacatgaaaaaatgcaag 116  Q
    |||||||||||||||||||||| |||| |||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  42883576 aaatgtgatgataagtgccaaagcatatcaattgttttctcataaaaattaaagtgccacaacttttgtatgatattgaaacaacatgacaaaatgcaag 42883675  T
Q  117 ctaaaaccaacgtgagtt-actcacgtagggatttaatgt 155  Q
    |||||||||||| ||||| |||| ||| |||||| |||||    
T  42883676 ctaaaaccaacgcgagttaactcgcgttgggattcaatgt 42883715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 3792632 - 3792569
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||| ||| |||||||| ||||||||||  ||||||||||||||||||| ||||||    
T  3792632 ttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatga 3792569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 45691054 - 45691126
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 315  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691054 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 45691196 - 45691268
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 315  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 315
Target Start/End: Original strand, 45691338 - 45691410
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 315  Q
    |||||||| ||||||| |||||||| |||||||||| ||||||||||||| |||||  |||||| ||| ||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaattc 45691410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 11821232 - 11821169
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||||| |||| | |||||||| |||||||||| |||||| |||||| |||||||||||||    
T  11821232 ttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatga 11821169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 45688380 - 45688317
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| |||||| | |||||||||| ||||||||  ||| |||||||||||||    
T  45688380 ttaacatgcgtaggggcattttgaacttttactttgggaatgagcagaaccatttggataatga 45688317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 266
Target Start/End: Original strand, 10884458 - 10884518
Alignment:
Q  206 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 266  Q
    |||| ||||||||| |||||||||||||||| |  | |||||||| |||||||||||||||    
T  10884458 cgtgagttaactcacgcaaatttaacactagcgtgagttaacatgtgtaggggtattttgg 10884518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 33403127 - 33403195
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| |||||||||||||||| ||||| || ||||||||||  ||||||||| ||| ||||| ||||||    
T  33403127 gcaagttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatactgtttgggtaatga 33403195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 39650281 - 39650205
Alignment:
Q  230 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||| |||  |||||||||||||||| ||||||||  ||||||||  ||||||||||||| |||| | ||||||    
T  39650281 acactagcgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatga 39650205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 267
Target Start/End: Original strand, 42883723 - 42883784
Alignment:
Q  206 cgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgga 267  Q
    |||| |||||||||||||||||||||||| | |  | |||||||| |||||| |||||||||    
T  42883723 cgtgagttaactcatgcaaatttaacacttgcgtgagttaacatgtgtagggatattttgga 42883784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 5603112 - 5603160
Alignment:
Q  188 gtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 236  Q
    ||||||||| || || |||||| ||||||||| ||||||||||||||||    
T  5603112 gtgacttaactcgcgtaacgtgagttaactcacgcaaatttaacactag 5603160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 38790957 - 38790893
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttacttt-gagaatgagcgaaactatttggataatga 306  Q
    ||||||||||||||||||||||||| ||||||||| || |||||||||||| |||||||||||||    
T  38790957 ttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatga 38790893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 149102 - 149052
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 236  Q
    ||||||||||||||| ||||||||  |||||||| ||||||||||||||||    
T  149102 gcgtgacttaagtcatgcaacgtgacttaactcacgcaaatttaacactag 149052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 44552703 - 44552771
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| |||||||||||||| | ||||| || ||||||||||||||||||||| | | ||||| ||||||    
T  44552703 gcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgatattgtttgggtaatga 44552771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Original strand, 26502454 - 26502497
Alignment:
Q  260 attttggatttttactttgagaatgagcgaaactatttggataa 303  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  26502454 attttggacttttactttgagaatgagcgaaaccatttagataa 26502497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 26590260 - 26590217
Alignment:
Q  260 attttggatttttactttgagaatgagcgaaactatttggataa 303  Q
    |||||||| |||||||||||||||||||||||| |||| |||||    
T  26590260 attttggacttttactttgagaatgagcgaaaccatttagataa 26590217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 26604179 - 26604234
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 298  Q
    |||||||||||||||| |||||  | |||||||||||||||||||| ||| |||||    
T  26604179 ttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttg 26604234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 298
Target Start/End: Original strand, 38792063 - 38792109
Alignment:
Q  252 gtaggggtattttggatttttactttgagaatgagcgaaactatttg 298  Q
    ||||||||||||| || |||||||||||||||||| ||||| |||||    
T  38792063 gtaggggtattttagacttttactttgagaatgagtgaaaccatttg 38792109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 306
Target Start/End: Original strand, 1537239 - 1537315
Alignment:
Q  230 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||| |||  |||||||||| ||||| |||||| |  |||||||||||||||| ||| ||| ||||| ||||||    
T  1537239 acactagcgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatga 1537315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 186 - 238
Target Start/End: Complemental strand, 15819838 - 15819786
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtg 238  Q
    ||||||||||| ||||||| |||| |||||||||  |||| ||||||||||||    
T  15819838 gcgtgacttaactcacgcagcgtgtgttaactcagacaaaattaacactagtg 15819786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 243 - 319
Target Start/End: Original strand, 6162688 - 6162764
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattcatag 319  Q
    |||||||||||||||| |||||||| |||||||||| ||||||||| ||| |||||| |||||| ||  ||||||||    
T  6162688 ttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaattcatag 6162764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 298
Target Start/End: Complemental strand, 11343019 - 11342907
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatga 285  Q
    ||||||||||| ||||||  | || ||||| ||  ||||| ||| |||||| | |||||||||||||||||||  ||||||| |||||||||| ||||||    
T  11343019 gcgtgacttaactcacgctgcatgagttaaatcgcgcaaaattagcactagcgtaaattaacatgcgtaggggctttttggacttttactttgggaatga 11342920  T
Q  286 gcgaaactatttg 298  Q
     || ||| |||||    
T  11342919 acggaaccatttg 11342907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 19866810 - 19866742
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||||| ||||||    
T  19866810 gcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatactgtttgggtaatga 19866742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 53827667 - 53827730
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| ||||||||  ||||||||| |||||||||| ||||||| | ||||||    
T  53827667 ttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 53827730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 7666962 - 7667040
Alignment:
Q  237 tgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattc 315  Q
    ||||| |||||||||||||||| ||||| || ||||| |||| |||||||||| ||| ||||| |||||| ||| ||||    
T  7666962 tgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatgagcaaaattc 7667040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 300
Target Start/End: Original strand, 34086841 - 34086903
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgga 300  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||||||    
T  34086841 gcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttgga 34086903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 243 - 292
Target Start/End: Original strand, 30533884 - 30533933
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaac 292  Q
    |||||||| ||||||||||||||||| |||||||||| ||||||| ||||    
T  30533884 ttaacatgtgtaggggtattttggatatttactttgaaaatgagcaaaac 30533933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 269 - 309
Target Start/End: Complemental strand, 3860292 - 3860252
Alignment:
Q  269 ttttactttgagaatgagcgaaactatttggataatgaaca 309  Q
    ||||| |||||||||||||||||| ||||||||||||||||    
T  3860292 ttttattttgagaatgagcgaaaccatttggataatgaaca 3860252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 306
Target Start/End: Original strand, 15042007 - 15042075
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| |||||||||||||||| ||||| || |||||||||| |||||||||| | | ||||| ||||||    
T  15042007 gcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatattgtttgggtaatga 15042075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 39688758 - 39688802
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 287  Q
    |||||||| ||||||||||||| || |||||||||||||||||||    
T  39688758 ttaacatgtgtaggggtattttcgacttttactttgagaatgagc 39688802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 42947447 - 42947399
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaa 291  Q
    |||||||||||||| | |||||||| |||||||||||||||||| ||||    
T  42947447 ttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaa 42947399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 50663947 - 50663899
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaa 291  Q
    |||||||||||||||| ||||||| | ||||||||| ||||||||||||    
T  50663947 ttaacatgcgtaggggcattttggttatttactttgggaatgagcgaaa 50663899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 251 - 306
Target Start/End: Complemental strand, 4969939 - 4969884
Alignment:
Q  251 cgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||| || |||||||||| ||||||||| ||| |||||| ||||||    
T  4969939 cgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatga 4969884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 231 - 306
Target Start/End: Original strand, 53814555 - 53814630
Alignment:
Q  231 cactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||| ||| ||||||||||||||||| ||||||    ||||||||| ||||||||||| | |||||| ||||||    
T  53814555 cactagcgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatga 53814630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 11343803 - 11343867
Alignment:
Q  243 ttaacatgcgta-ggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||| |||| ||||| || ||||||||||||| |||||| ||| ||||| |||||||    
T  11343803 ttaacatgcgtatggggcatttttgacttttactttgagagtgagcggaaccatttgaataatga 11343867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Complemental strand, 47064936 - 47064892
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 287  Q
    |||||||||||||| | |||||||| |||||||||| ||||||||    
T  47064936 ttaacatgcgtaggagcattttggacttttactttgggaatgagc 47064892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 287
Target Start/End: Original strand, 54528962 - 54529006
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagc 287  Q
    |||||||| ||||||||||||||||  ||||| ||||||||||||    
T  54528962 ttaacatgtgtaggggtattttggacatttacattgagaatgagc 54529006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 33164511 - 33164574
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| ||||||||  ||||||||||||||||||| ||| |||||| ||||||    
T  33164511 ttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatga 33164574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 36172237 - 36172174
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||| | ||||||||||||||| |||||||||| ||||||| | |||||||||| ||||||    
T  36172237 ttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatga 36172174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 298
Target Start/End: Original strand, 36174585 - 36174640
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 298  Q
    ||||||||||||| || ||||||||||||||||||| ||||||| ||||| |||||    
T  36174585 ttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttg 36174640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 55523797 - 55523734
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| ||||| || ||||||||||| ||||||||| | | ||||||||||||    
T  55523797 ttaacatgcgtaggggcattttcgacttttactttgaaaatgagcgataatgtttggataatga 55523734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 237 - 306
Target Start/End: Original strand, 12572819 - 12572888
Alignment:
Q  237 tgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| ||||||||||| ||||| ||||||||  |||||||||||||||| ||| ||| ||||||| ||||    
T  12572819 tgcatattaacatgcgcaggggcattttggacatttactttgagaatgaacgatactgtttggatgatga 12572888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 303
Target Start/End: Complemental strand, 38677068 - 38676951
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatga 285  Q
    ||||| ||||| ||||||  |||| ||||| || |||||| ||||||| |  | || ||||||||||||| |||||||||||  |||| |||| ||||||    
T  38677068 gcgtgccttaactcacgctgcgtgagttaagtcgtgcaaaattaacaccaacgtaagttaacatgcgtagaggtattttggacatttattttgggaatga 38676969  T
Q  286 gcgaaactatttggataa 303  Q
    || ||||  |||||||||    
T  38676968 gcaaaaccgtttggataa 38676951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 28798151 - 28798214
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||| | ||||| ||||||||  |||||||||||||||||||| ||| ||||| ||||||    
T  28798151 ttaacatgtgcaggggcattttggacatttactttgagaatgagcgatactgtttgggtaatga 28798214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 286
Target Start/End: Complemental strand, 36217942 - 36217899
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgag 286  Q
    |||||||||||||||| |||||||| |||||||||| |||||||    
T  36217942 ttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 306
Target Start/End: Complemental strand, 40451003 - 40450940
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| ||||| || |||||||||| |||||||||| ||| ||| | ||||||    
T  40451003 ttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatactgtttaggtaatga 40450940  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 298
Target Start/End: Complemental strand, 53265864 - 53265809
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 298  Q
    |||||||||||||| | |||||||| |||||||||  ||||||||||||| |||||    
T  53265864 ttaacatgcgtaggagcattttggaattttactttaggaatgagcgaaaccatttg 53265809  T

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Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 40361676 - 40361714
Alignment:
Q  166 agcgtgacctaactcacgtggcgtgacttaagtcacgca 204  Q
    |||||||  ||||||||||||||||||||||||||||||    
T  40361676 agcgtgagttaactcacgtggcgtgacttaagtcacgca 40361714  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 299
Target Start/End: Complemental strand, 33161715 - 33161646
Alignment:
Q  230 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 299  Q
    |||||||||||  |||||||  | ||||||||||||||| ||||||||| |||||| ||| ||| |||||    
T  33161715 acactagtgcatgttaacatatgcaggggtattttggatatttactttgggaatgaacgatactctttgg 33161646  T

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Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 306
Target Start/End: Complemental strand, 24972467 - 24972399
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| ||||||||||||||||| |||| || |||||||||  |||||||||| ||| ||| | ||||||    
T  24972467 gcaagttaacatgcgtaggggtgtttttgacttttactttaggaatgagcgatactgtttaggtaatga 24972399  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 306
Target Start/End: Original strand, 9448715 - 9448766
Alignment:
Q  255 ggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||| |||||||| |||||||||||||||||| ||||| |||||||||||||    
T  9448715 ggggcattttggacttttactttgagaatgagtgaaaccatttggataatga 9448766  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 23558989 - 23559052
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| |||||||| |||||| |||  |||||||| ||| |||||||||||||    
T  23558989 ttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatga 23559052  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 243 - 306
Target Start/End: Original strand, 33220793 - 33220856
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    |||||||||||||||| |||||| | |||||||||| ||||||| ||||| |||||| ||||||    
T  33220793 ttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatga 33220856  T

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Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 17875313 - 17875365
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactagtg 238  Q
    |||||| ||||||||||||||||| ||||| ||| ||||||| ||||||||||    
T  17875313 gcgtgagttaagtcacgcaacgtgagttaagtcacgcaaattaaacactagtg 17875365  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 1349196 - 1349248
Alignment:
Q  214 aactcatgcaaatttaacactagtgcaaattaacatgcgtaggggtattttgg 266  Q
    |||||| |||||||||||| |||||  | |||||||||||| |||||||||||    
T  1349196 aactcacgcaaatttaacaatagtgtgagttaacatgcgtaagggtattttgg 1349248  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 238 - 317
Target Start/End: Complemental strand, 17436113 - 17436034
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatgaacaagattcat 317  Q
    |||| ||||||||||||| || ||||| || |||||||||| ||||||||| ||| ||||| ||||||| ||| ||||||    
T  17436113 gcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaaccatttgaataatgagcaaaattcat 17436034  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 186 - 236
Target Start/End: Original strand, 807132 - 807182
Alignment:
Q  186 gcgtgacttaagtcacgcaacgtgggttaactcatgcaaatttaacactag 236  Q
    |||||||||||||||||||  ||| ||||||||| ||||||||||||||||    
T  807132 gcgtgacttaagtcacgcagtgtgagttaactcacgcaaatttaacactag 807182  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 306
Target Start/End: Complemental strand, 14153439 - 14153363
Alignment:
Q  230 acactagtgcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttggataatga 306  Q
    ||||||| |||  ||||||||||||||||||||||||   ||||||||| |||||||| |||  |||||| ||||||    
T  14153439 acactagcgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatga 14153363  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 243 - 299
Target Start/End: Complemental strand, 806617 - 806561
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 299  Q
    ||||||| |||||| ||||||| ||  |||||||||||||||||| ||||| |||||    
T  806617 ttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgg 806561  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Complemental strand, 19405394 - 19405358
Alignment:
Q  166 agcgtgacctaactcacgtggcgtgacttaagtcacg 202  Q
    |||||||| ||||||||| ||||||||||||||||||    
T  19405394 agcgtgacttaactcacgcggcgtgacttaagtcacg 19405358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 299
Target Start/End: Original strand, 370 - 426
Alignment:
Q  243 ttaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttgg 299  Q
    ||||||||| || ||| |||| |||||||||||||| ||||||||||||| ||||||    
T  370 ttaacatgcataagggcatttgggatttttactttgggaatgagcgaaaccatttgg 426  T

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Target: scaffold0041 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 298
Target Start/End: Original strand, 24366 - 24426
Alignment:
Q  238 gcaaattaacatgcgtaggggtattttggatttttactttgagaatgagcgaaactatttg 298  Q
    |||| |||||||||||||||| |||||  | |||||||||| |||||||||| ||| ||||    
T  24366 gcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatactgtttg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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