View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_11 (Length: 402)
Name: NF9501_low_11
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Complemental strand, 2802771 - 2802387
Alignment:
| Q |
1 |
ttcaagtttaacataagcctaacatattaatgtacaccatcaattttgtacctaaggtcaaatctagcacaactctagcatacggctacacctaatatat |
100 |
Q |
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| T |
2802771 |
ttcaagtttaacataagcctaacatattaatgtacaccatcaattttgtacctaaggtcaaatctagcacaactctagcatacggctacacctaatatat |
2802672 |
T |
|
| Q |
101 |
tgtctattttctgtttatgatagagaatcacctaatctaatgtacaaggtgcttgcatgccaatgctatagtaagtgttatcaaaattcaaatcatatta |
200 |
Q |
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| T |
2802671 |
tgtctattttctgtttatgatagagaatcacctaatctaatgtaaaaggtgcttgcacgccaatgctatagtaagtgttatcaaaattcaaatcatatta |
2802572 |
T |
|
| Q |
201 |
ttcattctttcacatactttttctttttatattcataactttatgatatcctaatgttaaaatatttccacccaagttttgaagatgaacaagaacaatg |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802571 |
ttcattctttcacataatttttctttttatattcataactttatgatatcctaatgttaaaatatttccacccaagttttgaagatgaacaagaacaatg |
2802472 |
T |
|
| Q |
301 |
acattttttaaatcaccttgcaaagattatagattggtgattgtgatgttgtctattatataattgagtgattatggcctttggt |
385 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2802471 |
acattttttaaatcaccttgcaaagattatagattggtgattgtgatgttgtctattatataattgagtgattatggcctttggt |
2802387 |
T |
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