View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_15 (Length: 331)
Name: NF9501_low_15
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 22059826 - 22060020
Alignment:
| Q |
1 |
acccgataaagatacatcatcagattcgtcgcaggtaattaatccaactgaaaacaagtctggctctatcaagattgtgtatggaaagtggatgtcagtt |
100 |
Q |
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| T |
22059826 |
acccgataaagatacatcatcagattcgtcgcaggtgattaatccaactgtaaacaagtctggctctatcaagattgtgtatggaaagtggatgtcagtt |
22059925 |
T |
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| Q |
101 |
ggacttgtattagctttcgcggcgatgattcaaatttgatattgagagatgagtatatatatgcttttgagtttcattcttcagaacacgcacgttc |
197 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22059926 |
ggacttgtattacctttcgcggcgatgattcaaatttgatattgagagatga--atatatatgcttttgagtttcattcttcagaacacgcacgttc |
22060020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 22075357 - 22075241
Alignment:
| Q |
1 |
acccgataaagatacatcatcagattcgtcgcaggtaattaatccaactgaaaacaagtctggctctatcaagattgtgtatggaaagtggatgtcagtt |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |||| | ||||||||||||||||||| ||||| || |
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| T |
22075357 |
acccgataaagatacatcctcagattcgtcgcaggtaattaatccaactgaagacaagtctagctccgtgaagattgtgtatggaaagttcgtgtcactt |
22075258 |
T |
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| Q |
101 |
ggacttgtattagcttt |
117 |
Q |
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||||||||||||||||| |
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| T |
22075257 |
ggacttgtattagcttt |
22075241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 230 - 312
Target Start/End: Original strand, 22060053 - 22060133
Alignment:
| Q |
230 |
aattcttatcttagggagtgtatactttgagaggcgagagctttgtaatggtttgtgtgactatgttgtggtgatactatcat |
312 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
22060053 |
aattcttatcttagggagt--atactttgagaggcgagagctttgtaacggtttgtgtgactatgttgtggtgatactatcat |
22060133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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