View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_19 (Length: 315)
Name: NF9501_low_19
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 296
Target Start/End: Original strand, 11968440 - 11968738
Alignment:
| Q |
1 |
cgatggggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattct--caaaggctatggaaaataataagagaacattgtgatagg |
98 |
Q |
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| T |
11968440 |
cgatggggaaattatttgtatacaacatgtaaatcaatggaatgttggagatgaattcttacaaaggctatggaaaataataagagaacattgtgataag |
11968539 |
T |
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| Q |
99 |
gaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagtgagagactggcaagggcacctttttgagagtcagagaaataaacaacta |
198 |
Q |
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| T |
11968540 |
gaatgatgtgtgatagatataagagaggcagtatatcgtacacatgatagtgagagaccggcaaggacaccgttttgagagtcagagaaataaacaacta |
11968639 |
T |
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| Q |
199 |
ggatatattacatgtgatagaatgaaatagctaattagtagaactttgctccaactgcatcaaatttt-aacgtgggtgaattgtggagaaaccgtaac |
296 |
Q |
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| T |
11968640 |
ggagattttacatgtgatagaatgaaatagctaattagtagaactttgctccaactccatcaaattttaaacgtgggtgaattgtggagaaaccgtaac |
11968738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Complemental strand, 40458571 - 40458482
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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| T |
40458571 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
40458482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 43408341 - 43408430
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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| T |
43408341 |
ggaaaatatttgtatacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatgagaaataataagagaacattgtgata |
43408430 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 7 - 96
Target Start/End: Original strand, 37667732 - 37667821
Alignment:
| Q |
7 |
ggaaattatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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| T |
37667732 |
ggaaaatatttttctacaacatgtgaaccaatggaatgatgaagatgtatgctcgaagactatagaaaataataggagaacattgtgata |
37667821 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 96
Target Start/End: Complemental strand, 22403404 - 22403321
Alignment:
| Q |
13 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgata |
96 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||| | || ||||||||||||||| || ||||| |
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| T |
22403404 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgtatgctcaaagaccataagaaataataagagaactttttgata |
22403321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 13 - 105
Target Start/End: Complemental strand, 194501 - 194411
Alignment:
| Q |
13 |
tatttgtatacaacatgtgaatcaatggaatgttggagatgaattctcaaaggctatggaaaataataagagaacattgtgatagggaatgat |
105 |
Q |
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| T |
194501 |
tatttgtatacaacatatgaatcaatggaacgttggagatgtatgctcaaagac--tgggaaataataagagagcattgtgatatgggatgat |
194411 |
T |
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