View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_2 (Length: 685)

Name: NF9501_low_2
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_2
NF9501_low_2
[»] chr4 (1 HSPs)
chr4 (17-667)||(45285167-45285818)


Alignment Details
Target: chr4 (Bit Score: 632; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 17 - 667
Target Start/End: Original strand, 45285167 - 45285818
Alignment:
Q  17 aagaagagttgaagacgaatgaggagagagacattgatgcacaggtagagattgcattgctgaaatctcatcttcaagaatataggttggcttataagga 116  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285167 aagaagagttgaagacgaataaggagagagacattgatgcacaggtagagattgcattgctgaaatctcatcttcaagaatataggttggcttataagga 45285266  T
Q  117 tggatatatcactgatcactcaaagggtgaagctgaagaaaacaatgacagtatcacaatctctttggaagattacaactacatgattaaagaagtccag 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285267 tggatatatcactgatcactcaaagggtgaagctgaagaaaacaatgacagtatcacaatctctttggaagattacaactacatgattaaagaagtccag 45285366  T
Q  217 aaaggaaataaaaaaggaaaccagatagagttagcattgatgaaaaaggagcttgaaaatgcatcattgaagatttcagagatgaggactcgtgccgaac 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285367 aaaggaaataaaaaaggaaaccagatagagttagcattgatgaaaaaggagcttgaaaatgcatcattgaagatttcagagatgaggactcgtgccgaac 45285466  T
Q  317 aggctatcagcagagctgagttagctgagaatggtaaagcagcattggaggacaaaataaggagacaccgcgaacataggctgagaaagaaggctgctct 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285467 aggctatcagcagagctgagttagctgagaatggtaaagcagcattggaggacaaaataaggagacaccgcgaacataggctgagaaagaaggctgctct 45285566  T
Q  417 aaccgcgcttcgggaggaatctacgcctaaaccatttaccccttcaacatcatatggaacaccaagtatgtaccagccattaagtaaagttctcaatata 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285567 aaccgcgcttcgggaggaatctacgcctaaaccatttaccccttcaacatcatatggaacaccaagtatgtaccagccattaagtaaagttctcaatata 45285666  T
Q  517 aagttgtaaaa-tttgtactgctattttgtactctattatttagtgtgactaatatatgtgagttgttagttgtcaattgcaattagttttggtattgtt 615  Q
    ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  45285667 aagttgtaaaagtttgtactgctattttgtactttattatttagtgtgactaatatatgtgagttgttacttgtcaattgcaattagttttggtattgtt 45285766  T
Q  616 gcaatatttgatagtatctagcaataggaacaccggttgtctactttgtact 667  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45285767 gcaatatttgatagtatctagcaataggaacaccggttgtctactttgtact 45285818  T

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