View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_20 (Length: 314)

Name: NF9501_low_20
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_20
NF9501_low_20
[»] scaffold0002 (3 HSPs)
scaffold0002 (1-304)||(142102-142405)
scaffold0002 (181-256)||(132104-132179)
scaffold0002 (45-190)||(131945-132090)
[»] chr3 (33 HSPs)
chr3 (1-304)||(13164583-13164886)
chr3 (61-301)||(13347729-13347968)
chr3 (181-256)||(13174809-13174884)
chr3 (45-190)||(13174898-13175043)
chr3 (64-132)||(19716209-19716277)
chr3 (70-131)||(18316496-18316556)
chr3 (45-190)||(13337838-13337983)
chr3 (76-131)||(54990726-54990781)
chr3 (52-130)||(4222141-4222219)
chr3 (181-256)||(13337745-13337826)
chr3 (52-130)||(53863866-53863943)
chr3 (50-123)||(3054992-3055065)
chr3 (70-131)||(42799745-42799805)
chr3 (77-132)||(16900677-16900732)
chr3 (70-142)||(40268507-40268580)
chr3 (70-129)||(44069776-44069835)
chr3 (91-132)||(9345256-9345297)
chr3 (51-132)||(14339609-14339690)
chr3 (52-129)||(26871503-26871580)
chr3 (72-142)||(47454601-47454673)
chr3 (87-131)||(5166463-5166507)
chr3 (78-130)||(10445137-10445189)
chr3 (72-132)||(11092166-11092225)
chr3 (52-128)||(34844371-34844446)
chr3 (72-128)||(35623267-35623322)
chr3 (62-126)||(40883264-40883328)
chr3 (51-130)||(14186647-14186725)
chr3 (68-130)||(26481943-26482005)
chr3 (80-130)||(30311334-30311384)
chr3 (52-130)||(31520603-31520681)
chr3 (69-131)||(35981683-35981745)
chr3 (88-130)||(37788463-37788505)
chr3 (70-130)||(353155-353215)
[»] chr7 (29 HSPs)
chr7 (52-132)||(38374595-38374675)
chr7 (51-132)||(5579230-5579311)
chr7 (52-127)||(5273591-5273666)
chr7 (52-132)||(31835192-31835272)
chr7 (70-142)||(22760881-22760955)
chr7 (51-130)||(26459408-26459487)
chr7 (70-132)||(19553472-19553533)
chr7 (72-130)||(43215204-43215262)
chr7 (73-130)||(29385741-29385798)
chr7 (72-132)||(25956289-25956348)
chr7 (72-130)||(30442508-30442566)
chr7 (48-130)||(39631840-39631922)
chr7 (70-132)||(43590925-43590987)
chr7 (82-130)||(2882980-2883028)
chr7 (65-132)||(46279027-46279093)
chr7 (70-116)||(3968654-3968700)
chr7 (69-131)||(18884402-18884464)
chr7 (71-133)||(25132373-25132435)
chr7 (94-132)||(29916804-29916842)
chr7 (70-132)||(48125171-48125232)
chr7 (51-116)||(3280497-3280562)
chr7 (52-129)||(35328874-35328950)
chr7 (78-130)||(17041010-17041062)
chr7 (78-130)||(17113821-17113873)
chr7 (78-130)||(20335829-20335881)
chr7 (105-133)||(20468319-20468347)
chr7 (86-130)||(23552152-23552196)
chr7 (64-132)||(38860587-38860655)
chr7 (52-132)||(48039643-48039723)
[»] chr8 (26 HSPs)
chr8 (75-132)||(3524397-3524454)
chr8 (52-123)||(26688865-26688936)
chr8 (72-129)||(11793520-11793577)
chr8 (52-131)||(28783060-28783139)
chr8 (72-130)||(22193362-22193420)
chr8 (51-132)||(6530806-6530886)
chr8 (70-130)||(968380-968440)
chr8 (72-132)||(19703483-19703543)
chr8 (72-131)||(16852360-16852419)
chr8 (53-128)||(29858049-29858124)
chr8 (72-130)||(3624600-3624658)
chr8 (72-130)||(6536540-6536598)
chr8 (72-130)||(18540318-18540376)
chr8 (70-132)||(43533715-43533777)
chr8 (52-129)||(11979252-11979329)
chr8 (72-129)||(18897186-18897243)
chr8 (75-132)||(40136959-40137015)
chr8 (72-132)||(2203512-2203572)
chr8 (52-116)||(22268946-22269009)
chr8 (51-130)||(23361647-23361726)
chr8 (71-132)||(28787492-28787552)
chr8 (54-130)||(8794343-8794419)
chr8 (80-128)||(11819804-11819852)
chr8 (80-128)||(27750758-27750806)
chr8 (78-130)||(33017240-33017292)
chr8 (70-130)||(35287734-35287794)
[»] chr4 (35 HSPs)
chr4 (71-132)||(8325375-8325436)
chr4 (70-132)||(46295115-46295177)
chr4 (51-161)||(44865333-44865445)
chr4 (76-132)||(32992636-32992692)
chr4 (78-130)||(37274457-37274509)
chr4 (70-130)||(49576892-49576952)
chr4 (52-164)||(29195095-29195208)
chr4 (51-130)||(37109349-37109428)
chr4 (70-132)||(37980144-37980205)
chr4 (70-132)||(56409969-56410030)
chr4 (78-130)||(7949452-7949504)
chr4 (78-130)||(23377982-23378034)
chr4 (46-130)||(33619200-33619284)
chr4 (52-127)||(38206127-38206201)
chr4 (70-132)||(5795405-5795467)
chr4 (52-130)||(19680786-19680864)
chr4 (47-133)||(47044712-47044798)
chr4 (51-132)||(19238573-19238654)
chr4 (70-142)||(25434644-25434715)
chr4 (72-142)||(30938203-30938275)
chr4 (52-133)||(37720209-37720290)
chr4 (72-130)||(15180761-15180816)
chr4 (90-130)||(38838835-38838875)
chr4 (72-128)||(38869788-38869844)
chr4 (47-130)||(28635691-28635774)
chr4 (52-131)||(55427197-55427276)
chr4 (72-130)||(7292796-7292854)
chr4 (51-129)||(31759657-31759735)
chr4 (88-130)||(51622521-51622563)
chr4 (79-132)||(39509097-39509150)
chr4 (80-129)||(46329192-46329241)
chr4 (78-130)||(2622393-2622445)
chr4 (52-128)||(8030204-8030280)
chr4 (76-132)||(21344841-21344896)
chr4 (70-102)||(39030139-39030171)
[»] chr6 (18 HSPs)
chr6 (52-129)||(12253707-12253784)
chr6 (70-128)||(10338174-10338232)
chr6 (70-130)||(6691549-6691608)
chr6 (70-130)||(20863393-20863453)
chr6 (70-130)||(33549122-33549182)
chr6 (70-132)||(14557980-14558042)
chr6 (72-130)||(24507534-24507592)
chr6 (70-132)||(34444821-34444883)
chr6 (73-132)||(24762404-24762462)
chr6 (72-130)||(12188301-12188359)
chr6 (52-130)||(17169816-17169894)
chr6 (50-132)||(31847081-31847163)
chr6 (74-123)||(6384008-6384056)
chr6 (70-119)||(20864215-20864263)
chr6 (73-130)||(24334023-24334080)
chr6 (52-142)||(28028530-28028621)
chr6 (78-130)||(14278109-14278161)
chr6 (86-130)||(23910109-23910153)
[»] chr5 (21 HSPs)
chr5 (70-164)||(16457828-16457924)
chr5 (70-129)||(19373257-19373315)
chr5 (73-132)||(31669021-31669079)
chr5 (71-133)||(3315234-3315296)
chr5 (72-130)||(34984826-34984884)
chr5 (70-131)||(16172981-16173041)
chr5 (54-127)||(18596002-18596075)
chr5 (50-130)||(7918467-7918547)
chr5 (78-130)||(14285187-14285239)
chr5 (70-130)||(16773825-16773885)
chr5 (52-128)||(21589288-21589364)
chr5 (52-128)||(30109308-30109384)
chr5 (77-128)||(15485420-15485470)
chr5 (51-130)||(25627056-25627135)
chr5 (72-130)||(30883196-30883254)
chr5 (79-132)||(84851-84904)
chr5 (54-127)||(14656645-14656717)
chr5 (80-125)||(32340340-32340384)
chr5 (93-130)||(39327088-39327125)
chr5 (93-130)||(43442237-43442274)
chr5 (73-121)||(18989008-18989056)
[»] chr2 (23 HSPs)
chr2 (55-116)||(30359657-30359718)
chr2 (52-132)||(37480075-37480155)
chr2 (50-132)||(16525176-16525257)
chr2 (70-132)||(23052519-23052581)
chr2 (74-132)||(31681071-31681129)
chr2 (72-130)||(42327393-42327451)
chr2 (43-132)||(29503263-29503351)
chr2 (52-132)||(39714992-39715072)
chr2 (77-132)||(6099515-6099569)
chr2 (51-130)||(32106565-32106644)
chr2 (70-132)||(12517749-12517811)
chr2 (73-131)||(26482114-26482171)
chr2 (72-130)||(42602574-42602632)
chr2 (51-132)||(41908634-41908715)
chr2 (78-130)||(4262300-4262352)
chr2 (74-130)||(26276377-26276433)
chr2 (70-128)||(12086129-12086187)
chr2 (72-130)||(16918576-16918634)
chr2 (70-132)||(21213787-21213849)
chr2 (69-130)||(3890322-3890382)
chr2 (51-116)||(18825340-18825404)
chr2 (99-135)||(20217863-20217899)
chr2 (78-130)||(28194260-28194311)
[»] chr1 (34 HSPs)
chr1 (68-132)||(43445979-43446043)
chr1 (73-132)||(31605844-31605903)
chr1 (73-131)||(4824992-4825050)
chr1 (51-132)||(15581138-15581218)
chr1 (52-132)||(19528323-19528403)
chr1 (72-128)||(39012311-39012366)
chr1 (70-132)||(952529-952591)
chr1 (74-131)||(24019044-24019102)
chr1 (72-130)||(36371490-36371548)
chr1 (70-128)||(37047003-37047060)
chr1 (71-132)||(36428731-36428792)
chr1 (78-130)||(15786318-15786370)
chr1 (72-132)||(17297004-17297064)
chr1 (70-130)||(19940870-19940930)
chr1 (57-132)||(52029933-52030008)
chr1 (70-132)||(6127983-6128044)
chr1 (72-130)||(8177180-8177238)
chr1 (72-130)||(10526843-10526901)
chr1 (72-130)||(11063576-11063634)
chr1 (70-132)||(16169974-16170036)
chr1 (48-102)||(30043622-30043676)
chr1 (72-130)||(33700771-33700829)
chr1 (86-132)||(39966127-39966173)
chr1 (74-132)||(45266856-45266914)
chr1 (93-130)||(2799903-2799940)
chr1 (93-130)||(3265965-3266002)
chr1 (78-130)||(4566574-4566626)
chr1 (80-128)||(6122822-6122870)
chr1 (73-125)||(9570664-9570716)
chr1 (52-164)||(21694446-21694557)
chr1 (72-132)||(27430139-27430199)
chr1 (70-130)||(34228892-34228951)
chr1 (93-129)||(38947471-38947507)
chr1 (94-130)||(51814536-51814572)
[»] scaffold0291 (1 HSPs)
scaffold0291 (71-132)||(2466-2527)
[»] scaffold0258 (1 HSPs)
scaffold0258 (70-130)||(15321-15381)
[»] scaffold0337 (1 HSPs)
scaffold0337 (72-130)||(1773-1831)
[»] scaffold0194 (1 HSPs)
scaffold0194 (68-130)||(13044-13106)
[»] scaffold0299 (1 HSPs)
scaffold0299 (70-130)||(11546-11606)
[»] scaffold0065 (1 HSPs)
scaffold0065 (72-116)||(12209-12253)
[»] scaffold0221 (1 HSPs)
scaffold0221 (52-131)||(2906-2985)
[»] scaffold0236 (1 HSPs)
scaffold0236 (70-132)||(24836-24898)
[»] scaffold0180 (1 HSPs)
scaffold0180 (72-130)||(19960-20018)


Alignment Details
Target: scaffold0002 (Bit Score: 264; Significance: 1e-147; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 304
Target Start/End: Original strand, 142102 - 142405
Alignment:
Q  1 atgctttcaacaaaagcctaacccaaataccgacgatttatttcaaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtg 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  142102 atgctttcaacaaaaggctaacccagataccgacgatttatttcaaaatataacccactttgattgacctggtggtgttggctttggaccttggagtgtg 142201  T
Q  101 ctactcctcaaggtcttaggttcgattctcccatgccaattttcgtagactagtttagtttcttgattaaaaataaaactaatcaaaatagataagtaag 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  142202 ctactcctcaaggtcttaggttcaattctcccgtgccaattttcgtagactagtttagtttcttgattaaaaataaaactaatcaaaatagataagtaag 142301  T
Q  201 tacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttatagtgtctgctgcttccttaagagaaatgaaaagatcaaccaaatc 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  142302 tacaaactgaagctttatgacatacattaatgttgccagtaattcttattcttatagtgtctgctgcttccttaagagaaatgaaaaaatgaaccaaatc 142401  T
Q  301 tctg 304  Q
    ||||    
T  142402 tctg 142405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Original strand, 132104 - 132179
Alignment:
Q  181 aatcaaaatagataagtaagtacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttata 256  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |||| ||||||||    
T  132104 aatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 132179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 190
Target Start/End: Original strand, 131945 - 132090
Alignment:
Q  45 aaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||||||||||||| ||||||||  |||| ||||| ||| ||||||||||||| | | ||||||||||||  |||||||||||||||  ||||||||||    
T  131945 aaaatataacccacttggattgacg-ggtgatgttgacttaggaccttggagtgcgttcctcctcaaggtccgaggttcgattctccccgatgccaattt 132043  T
Q  143 tcgtagactagtttagtttcttgattaaaaataaaactaatcaaaata 190  Q
      |||  ||| ||||| ||||| ||| |||| ||||||||||||||||    
T  132044 cggtaatctaatttagcttcttcatt-aaaagaaaactaatcaaaata 132090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 13164886 - 13164583
Alignment:
Q  1 atgctttcaacaaaagcctaacccaaataccgacgatttatttcaaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtg 100  Q
    |||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||||||||||||||    
T  13164886 atgctttcaacaaaaggctaacccagataccgacgatttatttcaaaatataacccactttgattgacctggtggtgttggctttggaccttggagtgtg 13164787  T
Q  101 ctactcctcaaggtcttaggttcgattctcccatgccaattttcgtagactagtttagtttcttgattaaaaataaaactaatcaaaatagataagtaag 200  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13164786 ctactcctcaaggtcttaggttcaattctcccgtgccaattttcgtagactagtttagtttcttgattaaaaataaaactaatcaaaatagataagtaag 13164687  T
Q  201 tacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttatagtgtctgctgcttccttaagagaaatgaaaagatcaaccaaatc 300  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||    
T  13164686 tacaaactgaagctttatgacatacattaatgttgccagtaattcttattcttatagtgtctgctgcttccttaagagaaatgaaaaaatgaaccaaatc 13164587  T
Q  301 tctg 304  Q
    ||||    
T  13164586 tctg 13164583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 61 - 301
Target Start/End: Complemental strand, 13347968 - 13347729
Alignment:
Q  61 ggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcccatgccaattttcgtagactagtttagtt 160  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||||||||||||||||    
T  13347968 ggattgacctggtggtgttggctttggaccttggagtgtgctactcctcaaagtcttaggttcgat-ctcccgtgccaattttggtagactagtttagtt 13347870  T
Q  161 tcttgattaaaaataaaactaatcaaaatagataagtaagtacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttatagtgt 260  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13347869 tcttaattaaaaataaaactaatcaaaatagataagtaagtacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttatagtgt 13347770  T
Q  261 ctgctgcttccttaagagaaatgaaaagatcaaccaaatct 301  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  13347769 ctgctgcttccttaagagagatgaaaagatgaaccaaatct 13347729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 13174884 - 13174809
Alignment:
Q  181 aatcaaaatagataagtaagtacaaactgaagctttatgacatacatttatgttgccagtaattcttattcttata 256  Q
    ||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| || |||| ||||||||    
T  13174884 aatcaaaatagataagtaaatacaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 13174809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 13175043 - 13174898
Alignment:
Q  45 aaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||||||||||||| ||||||||  |||| ||||| ||| ||||||||||||| | | ||||||||||||  |||||||||||||||  ||||||||||    
T  13175043 aaaatataacccacttggattgacg-ggtgatgttgacttaggaccttggagtgcgttcctcctcaaggtccgaggttcgattctccccgatgccaattt 13174945  T
Q  143 tcgtagactagtttagtttcttgattaaaaataaaactaatcaaaata 190  Q
      |||  ||| ||||| ||||| ||| |||| ||||||||||||||||    
T  13174944 cggtaatctaatttagcttcttcatt-aaaagaaaactaatcaaaata 13174898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 132
Target Start/End: Original strand, 19716209 - 19716277
Alignment:
Q  64 ttgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||||||||||| ||||| ||||||||||| |||||||||||||  ||||||||||||||    
T  19716209 ttgacatggtggtgttggcttgggaccatggagtgtgctcctcctcaaggtctctggttcgattctccc 19716277  T

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Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 18316556 - 18316496
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||||||    
T  18316556 tggtggtgctggcttgggaccttggagtgtgctcctc-tcaaggtcttaggttcgattctcc 18316496  T

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Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 13337983 - 13337838
Alignment:
Q  45 aaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||||||||||||| ||||||||  |||| ||||| ||| ||||||| ||||| | | ||||||||| ||  |||||||||||||||  ||||||||||    
T  13337983 aaaatataacccacttggattgacg-ggtgatgttgacttaggaccttagagtgcgttcctcctcaagatccgaggttcgattctccccgatgccaattt 13337885  T
Q  143 tcgtagactagtttagtttcttgattaaaaataaaactaatcaaaata 190  Q
      |||  ||| ||||| ||||| ||| |||| ||||||||||||||||    
T  13337884 cggtaatctaatttagcttcttcatt-aaaagaaaactaatcaaaata 13337838  T

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Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 54990726 - 54990781
Alignment:
Q  76 tgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    ||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||    
T  54990726 tgttggcttgggaccttggagcgtgctcctcctcaaggtctcaggttcgattctcc 54990781  T

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Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 4222141 - 4222219
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||| || ||| ||| ||||| ||||||| ||| || |||||||||| |||||||| ||||||||||||||||||    
T  4222141 aacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctc 4222219  T

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Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 256
Target Start/End: Complemental strand, 13337826 - 13337745
Alignment:
Q  181 aatcaaaatagataagtaagtacaaactgaa------gctttatgacatacatttatgttgccagtaattcttattcttata 256  Q
    ||||||||||||||||||| |||||||||||      ||||| |||||||||||||||||||||| || |||| ||||||||    
T  13337826 aatcaaaatagataagtaactacaaactgaaactgaagctttgtgacatacatttatgttgccagcaactcttgttcttata 13337745  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 53863943 - 53863866
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||| || ||| | ||||| ||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||    
T  53863943 aacccacttgggttgtcctggtgatgttggcttgggaccttggagtgtgctcct-ctcaaggtcttaggttcaattctc 53863866  T

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Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 50 - 123
Target Start/End: Original strand, 3054992 - 3055065
Alignment:
Q  50 ataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttc 123  Q
    |||||||||| || ||| | ||||||||||||||| ||||||||||| ||||| ||||||||| ||| ||||||    
T  3054992 ataacccacttgggttggcctggtggtgttggcttgggaccttggagcgtgcttctcctcaagatctcaggttc 3055065  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 42799805 - 42799745
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||| |||||||| |||||    
T  42799805 tggtggtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggttcgactctcc 42799745  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 16900732 - 16900677
Alignment:
Q  77 gttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| ||||||||||||||||| ||| ||||||||| | |||||||||||||    
T  16900732 gttggcttgggaccttggagtgtgctcctcgtcaaggtctcatgttcgattctccc 16900677  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 40268507 - 40268580
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||||||||||||| ||||||||||||| ||| || || ||||||| |||||||||||||||  ||||||||||    
T  40268507 tggtggtgttggcttgggaccttggagtgggctcct-cttaaggtctcaggttcgattctccccgatgccaattt 40268580  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 44069776 - 44069835
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||||||||||  || ||||||||||||| ||||||||||||| ||||| ||||||    
T  44069776 tggtggtgttggcttgagatcttggagtgtgctcctcctcaaggtctcaggtttgattct 44069835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 9345297 - 9345256
Alignment:
Q  91 ttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  9345297 ttggagtgtgctcctcctaaaggtcttaggttcgattctccc 9345256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 14339609 - 14339690
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| | |||||| | ||||||| ||||||| |||  | |||||||||| |||||||| |||| |||||||||||||||    
T  14339609 taacccagttggattggcctggtggtattggcttgggatttgggagtgtgctcctcctcaatgtctcaggttcgattctccc 14339690  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 26871580 - 26871503
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||| || ||| | ||||||||||||||| |||||||||||| | || |||||||| |||| ||||| ||||||    
T  26871580 aacccacttgggttggcctggtggtgttggcttgggaccttggagttttctcctcctcaaagtctgaggtttgattct 26871503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 47454673 - 47454601
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||| |||||||  || ||||||||||||| |||||| |||||| |||||||||||||||  ||||||||||    
T  47454673 gtggtattggcttgagatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaattt 47454601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 131
Target Start/End: Original strand, 5166463 - 5166507
Alignment:
Q  87 gaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||||||||||| ||||||||| ||| ||||||||||||||    
T  5166463 gaccttggagtgtgctgctcctcaagatctcaggttcgattctcc 5166507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 10445189 - 10445137
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| |||||||||| |||||| |||||| |||||||||||||    
T  10445189 ttggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 10445137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 11092225 - 11092166
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||| |||||||| ||||||||||| |||||||||| |  ||||||||||||    
T  11092225 gtggtgttggcttgggaccttgtagtgtgctact-ctcaaggtctcaacttcgattctccc 11092166  T

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Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 34844371 - 34844446
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    |||||||| || ||| | ||||| |||||||||  |||||||||||||||| || |||||||||| |||||||||||    
T  34844371 aacccacttgggttgccctggtgttgttggcttgagaccttggagtgtgctcct-ctcaaggtctcaggttcgattc 34844446  T

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Target: chr3; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Complemental strand, 35623322 - 35623267
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||||||||| ||||||||||||||||| || |||||||||| | |||||||||    
T  35623322 gtggtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcatgttcgattc 35623267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 126
Target Start/End: Original strand, 40883264 - 40883328
Alignment:
Q  62 gattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgat 126  Q
    |||||||||| |||||||| ||| | |||||||||| |||| ||||||||||||| | |||||||    
T  40883264 gattgacttgatggtgttgacttggaaccttggagtatgctgctcctcaaggtctcatgttcgat 40883328  T

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Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 14186647 - 14186725
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||| | | ||||| ||| ||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  14186647 taacccacttgggttggcctagtggtattgtcttgggacct-ggagtgtgctcctcctcaaggtctcaggttcgattctc 14186725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 26481943 - 26482005
Alignment:
Q  68 cttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||  |||||| ||||||  ||||||||| |||||||| || |||||||||||||||    
T  26481943 cttggtggtaatggcttgggacctgagagtgtgctcctcctcaaagttttaggttcgattctc 26482005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 130
Target Start/End: Original strand, 30311334 - 30311384
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||| || |||||||||| ||||||||||||| |||||||||||||    
T  30311334 ggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 30311384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 31520681 - 31520603
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||| || ||| | ||||||  ||||||| ||| || |||||||||| |||||| |||||||||||| |||||||    
T  31520681 aacccacttgggttggcctggtggcattggcttgggatctgggagtgtgctcctcctcgaggtcttaggtttgattctc 31520603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 35981745 - 35981683
Alignment:
Q  69 ttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    ||||||||||||| || |||| ||||  |||||| ||||| |||||||||||||| |||||||    
T  35981745 ttggtggtgttggtttgggactttggtatgtgctcctccttaaggtcttaggttcaattctcc 35981683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Complemental strand, 37788505 - 37788463
Alignment:
Q  88 accttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||| |||||||||| ||||||||||||| |||||||||||||    
T  37788505 acctaggagtgtgctcctcctcaaggtctcaggttcgattctc 37788463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 353215 - 353155
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||| |||||||  |||||||| ||| | || ||||||||||||| |||||||||||||    
T  353215 tggtggcgttggctagggaccttgtagtattcttctcctcaaggtctcaggttcgattctc 353155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 38374675 - 38374595
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | ||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||    
T  38374675 aacccacttgggttggcgtggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccc 38374595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 5579311 - 5579230
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| || ||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| || ||||||    
T  5579311 taacccacttgggttgacctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggtttgactctccc 5579230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 5273666 - 5273591
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgatt 127  Q
    |||||||| || ||| | ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| ||||    
T  5273666 aacccacttgggttggcctggtggtgttggcttgggaccttagagtgtgctcctcctcaaggtcttaggtttgatt 5273591  T

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Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 31835192 - 31835272
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | ||||||||||||||| ||  ||||||||||||| ||||||||||||| |||||||||| ||||    
T  31835192 aacccacttgggttggcctggtggtgttggcttgggtgcttggagtgtgctcctcctcaaggtctcaggttcgattatccc 31835272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 22760881 - 22760955
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||||| ||| ||| |||||| |||||||||| ||||||||||||| |||||||||||||||  ||||||||||    
T  22760881 tggtggtattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaattt 22760955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 26459487 - 26459408
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||| | | ||||| ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  26459487 taacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 26459408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 19553472 - 19553533
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||||||| |||||| |||||||||| |||||||||||||||||||| ||||||||    
T  19553472 tggtggtattggctt-ggacctgggagtgtgctcctcctcaaggtcttaggttcaattctccc 19553533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 43215204 - 43215262
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  43215204 gtggtattggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 43215262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 29385798 - 29385741
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||| |||| |||||||||||| ||||||||||||| ||||| |||||||    
T  29385798 tggtgttggcttgggactttggagtgtgctcctcctcaaggtctcaggtttgattctc 29385741  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 25956348 - 25956289
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||    
T  25956348 gtggtattggcttgggaccttggagtgtgctcct-ctcaaggtcttaggttcaattctccc 25956289  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 30442508 - 30442566
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| ||||| |||| ||||||||||||| |||||||||||||    
T  30442508 gtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctc 30442566  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 39631840 - 39631922
Alignment:
Q  48 atataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||| || ||| | | ||||| ||||||| |||||| |||||  ||| ||||||||||||| |||||||||||||    
T  39631840 atataacccacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctc 39631922  T

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Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 43590925 - 43590987
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||||||| |||| | |||||||||| |||||||| |||| |||||||||||||||    
T  43590925 tggtggtattggcttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctccc 43590987  T

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Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 2882980 - 2883028
Alignment:
Q  82 ctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||||||||||| ||||||||||||| |||||| ||||||    
T  2882980 ctttgcaccttggagtgtgctcctcctcaaggtctcaggttcaattctc 2883028  T

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Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 46279027 - 46279093
Alignment:
Q  65 tgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||| |||||| |||| ||||||||||||||||||||| || ||||||||||  |||| |||||||||    
T  46279027 tgacctggtggagttgactttggaccttggagtgtgctcct-ctcaaggtctccggtttgattctccc 46279093  T

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Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 3968700 - 3968654
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    ||||||||||| ||| ||||||| ||||||||| |||||||||||||    
T  3968700 tggtggtgttgacttgggaccttcgagtgtgctcctcctcaaggtct 3968654  T

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Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 18884464 - 18884402
Alignment:
Q  69 ttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||| ||| |||||||||| |||||||||| || || ||||||| | ||||||||||||    
T  18884464 ttggtggtattgactttggacctcggagtgtgcttcttcttaaggtctcaagttcgattctcc 18884402  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 133
Target Start/End: Complemental strand, 25132435 - 25132373
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccca 133  Q
    |||||| ||| ||| |||||| |||||||||| || || ||||||| ||||||||||||||||    
T  25132435 ggtggtattgacttaggacctaggagtgtgctccttcttaaggtctcaggttcgattctccca 25132373  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 132
Target Start/End: Complemental strand, 29916842 - 29916804
Alignment:
Q  94 gagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| ||||||||||||| |||||||||||||||    
T  29916842 gagtgtgctcctcctcaaggtctcaggttcgattctccc 29916804  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 48125232 - 48125171
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||||| ||||||||||||||||| ||||  ||||||| |||||| ||| ||||    
T  48125232 tggtggtgttggcttgggaccttggagtgtgctcctcc-gaaggtctcaggttcaattttccc 48125171  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Complemental strand, 3280562 - 3280497
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    ||||||||| || ||||| ||||||| ||||||| |||||   ||||||||| |||||||||||||    
T  3280562 taacccacttgggttgacatggtggtattggcttgggacccgagagtgtgctcctcctcaaggtct 3280497  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 35328950 - 35328874
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||| || ||| | ||||||||||||||| | ||||| ||||||||| || |||||||| ||||||| ||||||    
T  35328950 aacccacttgggttggcctggtggtgttggcttggaaccttcgagtgtgcttct-ctcaaggttttaggtttgattct 35328874  T

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Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 17041062 - 17041010
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||| || | |||||||| ||||||||||||| |||||||||||||    
T  17041062 ttggcttgggatctggaagtgtgctcctcctcaaggtctcaggttcgattctc 17041010  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 17113821 - 17113873
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| | |||| |||||||||| ||||||||||||| | |||||||||||    
T  17113821 ttggcttagaacctgggagtgtgcttctcctcaaggtctcaagttcgattctc 17113873  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 20335881 - 20335829
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||| | |||||||||| |||||| |||||| |||||||||||||    
T  20335881 ttggcttgggacttgggagtgtgctcctcctcgaggtctcaggttcgattctc 20335829  T

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Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 105 - 133
Target Start/End: Complemental strand, 20468347 - 20468319
Alignment:
Q  105 tcctcaaggtcttaggttcgattctccca 133  Q
    |||||||||||||||||||||||||||||    
T  20468347 tcctcaaggtcttaggttcgattctccca 20468319  T

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Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 23552152 - 23552196
Alignment:
Q  86 ggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||| |||||||||| ||||||||||||| | |||||||||||    
T  23552152 ggacctgggagtgtgctcctcctcaaggtctcaagttcgattctc 23552196  T

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Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 132
Target Start/End: Complemental strand, 38860655 - 38860587
Alignment:
Q  64 ttgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||||||| ||| | | |||| |||||||  |||||||| ||||||||| ||||||||||    
T  38860655 ttgacatggtggtgttgacttggtatcttgaagtgtgcccctcctcaaagtcttaggtacgattctccc 38860587  T

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Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 48039723 - 48039643
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | |||||||||||||||  || |||||||| |||| || | |||||||| |||||| ||||||||    
T  48039723 aacccacttgggttggcctggtggtgttggcttgcgatcttggagtatgctccttcgcaaggtctcaggttctattctccc 48039643  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 3524454 - 3524397
Alignment:
Q  75 gtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  3524454 gtgttggcttgggaccttggagtgtgctcctcctcaaggtcttaggttcaattctccc 3524397  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 52 - 123
Target Start/End: Original strand, 26688865 - 26688936
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttc 123  Q
    |||||||| || ||| | ||||||||||||||| ||||||||||||||||| ||||||||||||| ||||||    
T  26688865 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtctcaggttc 26688936  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 72 - 129
Target Start/End: Complemental strand, 11793577 - 11793520
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||| |||| ||||||||||||||||| ||||||||||||||||||| ||||||    
T  11793577 gtggtgttcgcttgggaccttggagtgtgctcctcctcaaggtcttaggtttgattct 11793520  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 28783060 - 28783139
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||| || ||| ||||||||| |||||||  ||||| |||||||||| ||||||||||||| | ||||||||||||    
T  28783060 aacccacttgggttggcttggtggtattggcttgagacctgggagtgtgctcctcctcaaggtctcatgttcgattctcc 28783139  T

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Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 22193420 - 22193362
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| ||| || ||| |||||||||| |||||||||||||||||||||||||||    
T  22193420 gtggtgttgacttggggcctgggagtgtgctcctcctcaaggtcttaggttcgattctc 22193362  T

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Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Original strand, 6530806 - 6530886
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| || ||| | ||||||||||||||| |||||| |||||||||| || ||||| |||| |||||||||||||||    
T  6530806 taacccacttgggttggcctggtggtgttggcttgggacctaggagtgtgctcct-ctcaatgtctcaggttcgattctccc 6530886  T

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Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 968380 - 968440
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||||||| |||||| |||||||||| |||||| |||||| |||||||||||||    
T  968380 tggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 968440  T

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Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 19703543 - 19703483
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||    
T  19703543 gtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccc 19703483  T

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Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 72 - 131
Target Start/End: Original strand, 16852360 - 16852419
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    ||||| ||||||| |||||| |||||||||| |||||| |||||| ||||||||||||||    
T  16852360 gtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctcc 16852419  T

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Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 128
Target Start/End: Complemental strand, 29858124 - 29858049
Alignment:
Q  53 acccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||| |||||| | ||||||| ||||||| |||||  |||||||||| |||||| |||||| |||||||||||    
T  29858124 acccacttggattggcctggtggtattggcttgggaccagggagtgtgctcctcctcgaggtctcaggttcgattc 29858049  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 3624600 - 3624658
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||| ||||||||| |||||||||||||    
T  3624600 gtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctc 3624658  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 6536540 - 6536598
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||| |||||| ||||||    
T  6536540 gtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcaattctc 6536598  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 18540318 - 18540376
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| ||||||| || ||||||||||||| |||||||||||||    
T  18540318 gtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctc 18540376  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 43533777 - 43533715
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||||||  ||||||||||||||||  |||||||||||| | |||| ||||||||    
T  43533777 tggtggtgttggcttgagaccttggagtgtgcttatcctcaaggtctcacgttcaattctccc 43533715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 11979252 - 11979329
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||| || |||  |||| ||||||| ||| |||||||| |||||||| || |||||||||||||||||| ||||    
T  11979252 aacccacttgggttggtttggcggtgttgacttgggaccttgaagtgtgcttcttctcaaggtcttaggttcggttct 11979329  T

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Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 18897186 - 18897243
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||||| || ||||||| ||||||||| ||||||||||||| | ||||||||||    
T  18897186 gtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattct 18897243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 40137015 - 40136959
Alignment:
Q  75 gtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||| ||||||||||||||||| || |||||||||| ||||| |||||||||    
T  40137015 gtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggtttgattctccc 40136959  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 2203512 - 2203572
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||| ||| || ||||||||    
T  2203512 gtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcagggtcaattctccc 2203572  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 22269009 - 22268946
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    |||||||| || ||| | ||||||||||||||| ||||||||||||||||| || ||||||||||    
T  22269009 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgct-cttctcaaggtct 22268946  T

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Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 23361726 - 23361647
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||||| ||||||| ||| ||| |||  | |||||||||| ||||||||||||| |||||| ||||||    
T  23361726 taacccacttgggttgacctggtggtattgacttgggatatgggagtgtgctcctcctcaaggtctcaggttcaattctc 23361647  T

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Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 28787552 - 28787492
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||| || |||||||  |||||||| ||||||||||||| ||||| |||||||||    
T  28787552 ggtggtgttgg-ttgggaccttcaagtgtgctcctcctcaaggtctcaggtttgattctccc 28787492  T

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Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 54 - 130
Target Start/End: Complemental strand, 8794419 - 8794343
Alignment:
Q  54 cccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||| |||||| | | ||||| ||||||| | |||| | |||||||| ||||||| ||||| |||||||||||||    
T  8794419 cccacttggattggcatagtggtattggcttggaacctggaagtgtgctcctcctcagggtctcaggttcgattctc 8794343  T

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Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 11819804 - 11819852
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||| |||| | |||||||||| ||||||||||||| |||||||||||    
T  11819804 ggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattc 11819852  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 27750758 - 27750806
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||| |||| | |||||||||| ||||||||||||| |||||||||||    
T  27750758 ggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattc 27750806  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 33017240 - 33017292
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| | |||| | |||||||| ||||||||||||| |||||||||||||    
T  33017240 ttggcttggaacctggaagtgtgctcctcctcaaggtctcaggttcgattctc 33017292  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 35287734 - 35287794
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||||||  ||  |||||||||||| ||||||||||| | | |||||||||||    
T  35287734 tggtggtgttggcttgagattttggagtgtgctcctcctcaaggtatcatgttcgattctc 35287794  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 8325436 - 8325375
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||||||||    
T  8325436 ggtggtgttggcttgagaccttggagtgtgctcatcctcaaggtcttaggttcgattctccc 8325375  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 46295115 - 46295177
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||| |||||||||| |||| |||||||||||| ||||||||||||| |||||||||||||||    
T  46295115 tggtagtgttggcttgggacattggagtgtgctcctcctcaaggtctcaggttcgattctccc 46295177  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 51 - 161
Target Start/End: Original strand, 44865333 - 44865445
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattttcgtag 148  Q
    ||||||||| || ||| | || ||||||||||||  | |||||  ||||||| |||||||||||||||||||||||||||||   |||||||||  || |    
T  44865333 taacccacttgggttggcctgatggtgttggcttgagtccttgatgtgtgctcctcctcaaggtcttaggttcgattctcccctgtgccaatttcggtgg 44865432  T
Q  149 actagtttagttt 161  Q
    |||||||||||||    
T  44865433 actagtttagttt 44865445  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 32992636 - 32992692
Alignment:
Q  76 tgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||||    
T  32992636 tgttggcttgggaccttggagtgtgctcctcctcaaggtctcaagttcgattctccc 32992692  T

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Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 37274509 - 37274457
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| |||||||||| |||||||||||||||||||||||||||    
T  37274509 ttggcttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 37274457  T

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Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 49576952 - 49576892
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||||||||| | |||||||||| ||||||||||||| |||||||||||||    
T  49576952 tggtggtattggctttggacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 49576892  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 29195095 - 29195208
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattttcgtaga 149  Q
    |||||||| || ||| | ||||||||||||||| ||||||||||||||||| || |||||||||  | ||||||||||| |  ||||||||||| || |     
T  29195095 aacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcct-ctcaaggtcgcaagttcgattctctctaatgccaattttggttgg 29195193  T
Q  150 ctagtttagtttctt 164  Q
    ||||||||| |||||    
T  29195194 ctagtttagcttctt 29195208  T

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Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 51 - 130
Target Start/End: Complemental strand, 37109428 - 37109349
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||| | | ||||| ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  37109428 taacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 37109349  T

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Target: chr4; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 37980205 - 37980144
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||    
T  37980205 tggtgatgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggttcgattctccc 37980144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 56409969 - 56410030
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||||| ||||||||||||||||| || |||||||||| |||||||||||||||    
T  56409969 tggtgctgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggttcgattctccc 56410030  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 7949504 - 7949452
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  7949504 ttggcttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctc 7949452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 23377982 - 23378034
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  23377982 ttggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 23378034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 46 - 130
Target Start/End: Original strand, 33619200 - 33619284
Alignment:
Q  46 aaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||||| || ||| ||||||||| ||||||| ||| || |||| ||| | |||||  ||||||||||||||||||||    
T  33619200 aaatataacccacttgggttgccttggtggtattggcttaggatctgggagcgtggtcctccttgaggtcttaggttcgattctc 33619284  T

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Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 52 - 127
Target Start/End: Complemental strand, 38206201 - 38206127
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgatt 127  Q
    |||||||| || ||||| |||||||| |||||| ||||||||||||||||| || |||||||||| ||||| ||||    
T  38206201 aacccacttgggttgacctggtggtgctggcttgggaccttggagtgtgctcct-ctcaaggtctcaggtttgatt 38206127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 5795467 - 5795405
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||| ||| | |||||||||| |||| ||||||||||||| ||||| |||||||||    
T  5795467 tggtggtgttgacttggcaccttggagtatgctcctcctcaaggtctcaggtttgattctccc 5795405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 130
Target Start/End: Complemental strand, 19680864 - 19680786
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||| |||||| | | ||||| || |||| |||| | ||||||||||  ||||||||||||||||||||||||||    
T  19680864 aacccacttggattggcctagtggtattcgcttgggacttgggagtgtgctcttcctcaaggtcttaggttcgattctc 19680786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 133
Target Start/End: Original strand, 47044712 - 47044798
Alignment:
Q  47 aatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccca 133  Q
    ||||||||||||| |||||| | ||||||| ||| ||| ||| ||  |||| |||| |||||| |||||| ||||||||||||||||    
T  47044712 aatataacccacttggattggcctggtggtattgacttgggatctgagagtttgctcctcctcgaggtctcaggttcgattctccca 47044798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 19238654 - 19238573
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| || ||| | ||||||| ||||||| |||| | |||||||||| |||||| ||||||  ||||||||||||||    
T  19238654 taacccacttgggttggcctggtggtattggcttgggacttgggagtgtgctcctcctcgaggtctcgggttcgattctccc 19238573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 25434715 - 25434644
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccca-tgccaattt 142  Q
    ||||||||| ||||| ||||||||||||||||| ||| ||||||||| ||||| |||||||||| |||||||||    
T  25434715 tggtggtgt-ggcttgggaccttggagtgtgcttctc-tcaaggtctcaggtttgattctcccattgccaattt 25434644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 72 - 142
Target Start/End: Complemental strand, 30938275 - 30938203
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    ||||| |||| || ||| ||||||||||||| |||||| |||||| |||||||||||||||  ||||||||||    
T  30938275 gtggtattggtttgggatcttggagtgtgctcctcctcgaggtctcaggttcgattctccccaatgccaattt 30938203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 52 - 133
Target Start/End: Complemental strand, 37720290 - 37720209
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccca 133  Q
    |||||||| || ||| | ||||| | ||||||| |||||| |||||||||  ||||||||||||  ||||||||||||||||    
T  37720290 aacccacttgggttggcctggtgttattggcttgggacctgggagtgtgcccctcctcaaggtcccaggttcgattctccca 37720209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 15180761 - 15180816
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||   ||||||||||||||||||||||||||||    
T  15180761 gtggtattggcttgggacctgggagtgt---actcctcaaggtcttaggttcgattctc 15180816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 130
Target Start/End: Original strand, 38838835 - 38838875
Alignment:
Q  90 cttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||| |||| |||||||||||||||||||||||||||    
T  38838835 cttggagtatgctcctcctcaaggtcttaggttcgattctc 38838875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 38869788 - 38869844
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||| ||||||| ||| || |||||||||| ||||||||||||| |||||||||||    
T  38869788 gtggtattggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattc 38869844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 130
Target Start/End: Original strand, 28635691 - 28635774
Alignment:
Q  47 aatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||| || ||| | |||||||  || ||| ||| || |||||||||| |||||  ||||||||||||||||||||    
T  28635691 aatataacccacttgggttgtcctggtggtactgacttgggatctgggagtgtgctcctcctggaggtcttaggttcgattctc 28635774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 55427276 - 55427197
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||| || ||| | ||||||| ||||||| |||||| ||||| |||| || ||| |||||| ||||||||||||||    
T  55427276 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctcctgctcgaggtctcaggttcgattctcc 55427197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 7292854 - 7292796
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| | |||| |||||||||| |||||||| |||| |||||||||||||    
T  7292854 gtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctc 7292796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 129
Target Start/End: Complemental strand, 31759735 - 31759657
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    ||||||||| || ||||  | ||||| ||||||| |||| | |||||||||| ||||||||||||| || |||||||||    
T  31759735 taacccacttgggttgatctagtggtattggcttgggacttgggagtgtgctcctcctcaaggtctcagattcgattct 31759657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 130
Target Start/End: Original strand, 51622521 - 51622563
Alignment:
Q  88 accttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||||| ||||||||||||| |||||||| ||||    
T  51622521 accttggagtgtgctcctcctcaaggtctcaggttcgactctc 51622563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 39509097 - 39509150
Alignment:
Q  79 tggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||| ||| || |||||||||| |||||| |||||| |||||||||||||||    
T  39509097 tggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctccc 39509150  T

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Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 129
Target Start/End: Original strand, 46329192 - 46329241
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    ||||| |||||| |||||||||| ||||||||||| | ||||||||||||    
T  46329192 ggcttgggacctgggagtgtgctcctcctcaaggtatcaggttcgattct 46329241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 2622445 - 2622393
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| |||||||||| |||||| | |||| |||||||||||||    
T  2622445 ttggcttgggacctgggagtgtgctcctcctccatgtctcaggttcgattctc 2622393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 8030280 - 8030204
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    |||||||| |||||| | | ||||| | ||||| |||| | |||||||||| ||||||||||||| | |||||||||    
T  8030280 aacccacttggattgccctagtggtataggcttgggacttgggagtgtgctcctcctcaaggtctcaagttcgattc 8030204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 21344841 - 21344896
Alignment:
Q  76 tgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| ||||||||||||||||| || |||||||||| | |||| ||||||||    
T  21344841 tgttggcttgggaccttggagtgtgctcct-ctcaaggtctcatgttcaattctccc 21344896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 39030171 - 39030139
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgct 102  Q
    ||||||||||||||| |||||||||||||||||    
T  39030171 tggtggtgttggcttgggaccttggagtgtgct 39030139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 52 - 129
Target Start/End: Original strand, 12253707 - 12253784
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||| || ||||| || |||||||||||| ||| |||||||  |||| ||||||||||||||||||||||||||    
T  12253707 aacccacttgggttgacctgatggtgttggcttaggatcttggagcatgctgctcctcaaggtcttaggttcgattct 12253784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 10338232 - 10338174
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||| ||||||| |||||| |||||||||| ||||||||||||| |||||||||||    
T  10338232 tggtggtattggcttgggacctaggagtgtgctcctcctcaaggtctcaggttcgattc 10338174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 6691608 - 6691549
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||| |||| |||||||||||||||| || |||||||||| |||||||||||||    
T  6691608 tggtggtgttgactttagaccttggagtgtgctcct-ctcaaggtctcaggttcgattctc 6691549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 20863393 - 20863453
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||||| |||| |||||||||||| ||||||||||||| || || |||||||    
T  20863393 tggtggtgttggcttgggactttggagtgtgctcctcctcaaggtctcagatttgattctc 20863453  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 33549122 - 33549182
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||||||| |||||| |||||||||| |||||| |||||| |||||||||||||    
T  33549122 tggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 33549182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 14557980 - 14558042
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||||| |||||| | |||||||| ||||||  ||||| |||||||||||||||    
T  14557980 tggtggtgttggcttgggacctggaagtgtgctcctcctccgggtctcaggttcgattctccc 14558042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 24507592 - 24507534
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||  ||||| ||||||    
T  24507592 gtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttcaattctc 24507534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 34444821 - 34444883
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||| ||| ||||||| ||||||||| |||| |||||||| |||||||||||||||    
T  34444821 tggtggtattgacttgggaccttagagtgtgctcctccccaaggtctcaggttcgattctccc 34444883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 24762462 - 24762404
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||| ||||||||| ||||||| || || ||||||||||||||||| |||||    
T  24762462 tggtgttggcttgggaccttggtgtgtgctcct-cttaaggtcttaggttcgatcctccc 24762404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 12188359 - 12188301
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||| | | |||||||||||    
T  12188359 gtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctc 12188301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 52 - 130
Target Start/End: Original strand, 17169816 - 17169894
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||| ||| |||||||| ||||||||||| ||| ||| ||||||||||||| ||| ||||| ||| ||  |||||||||    
T  17169816 aacctacttggattgacctggtggtgttgtcttgggatcttggagtgtgctcctcatcaagatctcagactcgattctc 17169894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 31847163 - 31847081
Alignment:
Q  50 ataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| |||| || ||||| |||| || ||||||| | ||||| ||||||| ||||||||||||||| |  ||||||||||||    
T  31847163 ataactcacttgggttgacctggttgtattggcttggaaccttagagtgtgttactcctcaaggtctcaaattcgattctccc 31847081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 6384056 - 6384008
Alignment:
Q  74 ggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttc 123  Q
    ||||||||||| ||||||||||||||||| || |||||||||| ||||||    
T  6384056 ggtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggttc 6384008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 119
Target Start/End: Complemental strand, 20864263 - 20864215
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttag 119  Q
    ||||||||||||||| ||||||||||||||||| || ||||| |||||||    
T  20864263 tggtggtgttggcttaggaccttggagtgtgctcct-ctcaatgtcttag 20864215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 24334080 - 24334023
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||| |||| ||| ||| |||| ||||||||||||| |||||| ||||||    
T  24334080 tggtgttggcttgggacattgcagtatgctcctcctcaaggtctcaggttcaattctc 24334023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 142
Target Start/End: Original strand, 28028530 - 28028621
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattt 142  Q
    |||||||| || ||| | ||||||||||| ||| ||||||| ||||| ||| || |||||||||| | |||||||||||||  ||||||||||    
T  28028530 aacccacttgggttggcctggtggtgttgacttgggacctttgagtgagctcct-ctcaaggtctcatgttcgattctccctgatgccaattt 28028621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 14278161 - 14278109
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||||||| |||||| ||| ||||| ||||||| ||||| |||||||    
T  14278161 ttggctttggacctgggagtgcgctcctccttaaggtctcaggtttgattctc 14278109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 130
Target Start/End: Complemental strand, 23910153 - 23910109
Alignment:
Q  86 ggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||| |||||||||| ||||||||||||| |||||||| ||||    
T  23910153 ggacctgggagtgtgctcctcctcaaggtctcaggttcgaatctc 23910109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 70 - 164
Target Start/End: Original strand, 16457828 - 16457924
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc--atgccaattttcgtagactagtttagtttctt 164  Q
    ||||||| ||||||| ||||||||||||||||| ||||||||||||| | |||| ||||||||   ||||||||| ||| | ||||||||| |||||    
T  16457828 tggtggtattggcttgggaccttggagtgtgctcctcctcaaggtctcatgttcaattctccccggtgccaatttgcgtgggctagtttaggttctt 16457924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 129
Target Start/End: Original strand, 19373257 - 19373315
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||||||||||  ||||||||||||||||||| |||||||| ||||||||||||||    
T  19373257 tggtggtgttggcttgagaccttggagtgtgctact-ctcaaggttttaggttcgattct 19373315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 31669079 - 31669021
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||| |||||||||||| |||| ||| |||||||||||||||||||||||||    
T  31669079 tggtgttggcttgggaccttggagtctgctcctc-tcaaggtcttaggttcgattctccc 31669021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 71 - 133
Target Start/End: Original strand, 3315234 - 3315296
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccca 133  Q
    ||||||||| ||||  |||||||||||| ||| ||||||||||||| ||||||||||||||||    
T  3315234 ggtggtgttagcttgagaccttggagtgcgctcctcctcaaggtctcaggttcgattctccca 3315296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 34984826 - 34984884
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| | |||| |||||||||| |||||||||||||||||||||||||||    
T  34984826 gtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctc 34984884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 70 - 131
Target Start/End: Complemental strand, 16173041 - 16172981
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||| ||||||||||  |||||||||||||||| ||| ||||||||| ||||||||||||||    
T  16173041 tggtagtgttggcttgagaccttggagtgtgctcctc-tcaaggtctcaggttcgattctcc 16172981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 18596075 - 18596002
Alignment:
Q  54 cccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgatt 127  Q
    |||||| |||||||  | ||||| |||||||  ||||| ||| |||||| ||||||||||||||||||||||||    
T  18596075 cccacttggattgatctagtggtattggcttgtgacctgggaatgtgctcctcctcaaggtcttaggttcgatt 18596002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 7918547 - 7918467
Alignment:
Q  50 ataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| || ||| | | ||||| ||||||| | |||| ||||||  || |||||||||||||||||||||||||||    
T  7918547 ataacccacttgggttggcctagtggtattggcttggaacctgggagtgcactcctcctcaaggtcttaggttcgattctc 7918467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 14285187 - 14285239
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| | |||| |||||||||| ||||||||||||| |||||||||||||    
T  14285187 ttggcttggaacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 14285239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 16773825 - 16773885
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||| ||| |||||| |||||||||| |||||| |||||| |||||||||||||    
T  16773825 tggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 16773885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Original strand, 21589288 - 21589364
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    |||||||| || ||| | ||||||| ||||||| |||||| ||||| ||||||||||| | |||| |||||||||||    
T  21589288 aacccacttgggttggcctggtggtattggcttgggacctgggagtctgctactcctcgatgtctcaggttcgattc 21589364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 30109384 - 30109308
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    |||||||| || ||| ||||||||| |||||||  ||||| |||||||||| |||||  |||||| |||||||||||    
T  30109384 aacccacttgggttggcttggtggtattggcttgtgacctgggagtgtgctcctccttgaggtctcaggttcgattc 30109308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 128
Target Start/End: Complemental strand, 15485470 - 15485420
Alignment:
Q  77 gttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    |||||||| ||||||||||||||||| || |||||||||| |||||||||||    
T  15485470 gttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggttcgattc 15485420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 25627056 - 25627135
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||| | | ||||| ||||||| | || | |||||||||| ||||||||||||| |||||||||||||    
T  25627056 taacccacttgggttggcctagtggtattggcttggaacttgggagtgtgctcctcctcaaggtctcaggttcgattctc 25627135  T

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Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 30883254 - 30883196
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||| | |||| ||||||    
T  30883254 gtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaagttcaattctc 30883196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 132
Target Start/End: Original strand, 84851 - 84904
Alignment:
Q  79 tggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||| ||| || |||||||||| ||||||||||||| | |||||||||||||    
T  84851 tggcttgggatctgggagtgtgctcctcctcaaggtctcaagttcgattctccc 84904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 127
Target Start/End: Complemental strand, 14656717 - 14656645
Alignment:
Q  54 cccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgatt 127  Q
    |||||| || ||||| |||| ||||||||||  ||||||||||| |||| || |||||||||| ||||||||||    
T  14656717 cccactagggttgacctggttgtgttggcttgagaccttggagtttgctcct-ctcaaggtctcaggttcgatt 14656645  T

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Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 125
Target Start/End: Complemental strand, 32340384 - 32340340
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcga 125  Q
    ||||| ||||||||||||||||| ||| ||||||||||||||||||    
T  32340384 ggcttgggaccttggagtgtgctcctc-tcaaggtcttaggttcga 32340340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Complemental strand, 39327125 - 39327088
Alignment:
Q  93 ggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  39327125 ggagtgtgctcctcctcaaggtcttagcttcgattctc 39327088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 43442237 - 43442274
Alignment:
Q  93 ggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  43442237 ggagtgtgctcctcctcaaggtctcaggttcgattctc 43442274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 18989056 - 18989008
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggt 121  Q
    |||||||||||| ||||||||||||||||| ||| ||||| | ||||||    
T  18989056 tggtgttggcttgggaccttggagtgtgctcctcttcaagattttaggt 18989008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 55 - 116
Target Start/End: Original strand, 30359657 - 30359718
Alignment:
Q  55 ccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    ||||| || ||| ||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  30359657 ccacttgggttggcttggtggtgttggcttgggaccttggagtgtgctcctcctcaaggtct 30359718  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 37480075 - 37480155
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | ||||||| ||||||| ||||||  ||||||||| ||||||||||||| |||||||||||||||    
T  37480075 aacccacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccc 37480155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 132
Target Start/End: Original strand, 16525176 - 16525257
Alignment:
Q  50 ataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||| || ||| | || |||||||||||| |||| ||||||||||| ||| |||||||||| |||||||||||||||    
T  16525176 ataacccacttgggttggcctgatggtgttggcttgggacgttggagtgtgcgact-ctcaaggtctcaggttcgattctccc 16525257  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 23052581 - 23052519
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||||||| |||| | |||||||||| ||||||||||||| |||||||||||||||    
T  23052581 tggtggtattggcttgggacttgggagtgtgcttctcctcaaggtctcaggttcgattctccc 23052519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 31681071 - 31681129
Alignment:
Q  74 ggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||  |||||||||||||||| |||||||| |||| |||||||||||||||    
T  31681071 ggtgttggcttgagaccttggagtgtgcttctcctcaaagtctcaggttcgattctccc 31681129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 42327451 - 42327393
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| ||||||||||||| |||||||||||||    
T  42327451 gtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctc 42327393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 29503263 - 29503351
Alignment:
Q  43 tcaaaatataacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| |||||||| || ||| | | ||||| |||| || |||||| |||||||||| ||||||||||||| |||||||||||||||    
T  29503263 tcaaaata-aacccacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccc 29503351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 132
Target Start/End: Original strand, 39714992 - 39715072
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | ||||||| ||| ||| |||||| |||||||||| |||||| |||||| |||||||||||||||    
T  39714992 aacccacttgggttggcatggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccc 39715072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 132
Target Start/End: Complemental strand, 6099569 - 6099515
Alignment:
Q  77 gttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| ||||||||||||||||| ||| ||||||||| |||||||||||||||    
T  6099569 gttggcttgggaccttggagtgtgctcctc-tcaaggtctcaggttcgattctccc 6099515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 130
Target Start/End: Original strand, 32106565 - 32106644
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| || ||| | ||||||||||| ||| ||||||||||||||||| |  ||||||||||| || |||||||||    
T  32106565 taacccacttgggttggcctggtggtgttgacttgggaccttggagtgtgctccctctcaaggtcttgggctcgattctc 32106644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 12517811 - 12517749
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||| ||||||||| |||||||||||| |||| ||||||||||||| | ||| |||||||||    
T  12517811 tggtgttgttggcttgggaccttggagtttgctcctcctcaaggtctcatgtttgattctccc 12517749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 26482114 - 26482171
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||||||| |||||| |||||||||| || |||||||||| ||||||||||||||    
T  26482114 tggtgttggcttgggacctaggagtgtgctcct-ctcaaggtctcaggttcgattctcc 26482171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 42602574 - 42602632
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| |||||||||| || |||||||||||||||| |||||||    
T  42602574 gtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctc 42602632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 41908715 - 41908634
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| || ||| | ||||||||| || ||  |||||||||||||||| ||||||||||||| | |||||||| ||||    
T  41908715 taacccacttgggttggcctggtggtgtcggtttgagaccttggagtgtgctcctcctcaaggtctcaagttcgattatccc 41908634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 4262352 - 4262300
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| |||||| | |||||||| ||||||||||||| |||||||||||||    
T  4262352 ttggcttgggacctggcagtgtgctcctcctcaaggtctcaggttcgattctc 4262300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 26276377 - 26276433
Alignment:
Q  74 ggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||| || ||||| |||||||| ||||||||||||| ||||||| |||||    
T  26276377 ggtgttggcttggggccttgtagtgtgctcctcctcaaggtctcaggttcgtttctc 26276433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 128
Target Start/End: Complemental strand, 12086187 - 12086129
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||| ||||||| |||||| | |||||||| |||||||||||||  ||||||||||    
T  12086187 tggtggtattggcttgggacctggaagtgtgctcctcctcaaggtctcgggttcgattc 12086129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 16918634 - 16918576
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| |||| || ||| || |||||||||| ||||||||||||||||||| |||||||    
T  16918634 gtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggattctc 16918576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 21213787 - 21213849
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||||||| |||||| |||||||| | |||||  |||||| |||||||||||||||    
T  21213787 tggtggtattggcttgggacctgggagtgtgttcctccttgaggtctcaggttcgattctccc 21213849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 3890322 - 3890382
Alignment:
Q  69 ttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||| || |||||| ||||||||||| ||||| |||||| ||||||| ||||||||||||    
T  3890322 ttggtgatgatggcttgggaccttggagagtgcttctcctctaggtctt-ggttcgattctc 3890382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 116
Target Start/End: Original strand, 18825340 - 18825404
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    ||||||||| || || || ||||||||||||||| |||||| |||||||||| || ||||||||||    
T  18825340 taacccacttgggtttacctggtggtgttggcttgggacctaggagtgtgctcct-ctcaaggtct 18825404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 135
Target Start/End: Original strand, 20217863 - 20217899
Alignment:
Q  99 tgctactcctcaaggtcttaggttcgattctcccatg 135  Q
    |||| |||||||||||||||||||||||||| |||||    
T  20217863 tgctcctcctcaaggtcttaggttcgattcttccatg 20217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 28194311 - 28194260
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||| ||||||||||||| ||| | |||||||||||||||||||||    
T  28194311 ttggcttgggatcttggagtgtgctcctctt-aaggtcttaggttcgattctc 28194260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 132
Target Start/End: Original strand, 43445979 - 43446043
Alignment:
Q  68 cttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||| |||||||||||| || |||||||||||||| ||||||||||||| | |||||||||||||    
T  43445979 cttgatggtgttggcttgggtccttggagtgtgctcctcctcaaggtctcatgttcgattctccc 43446043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 132
Target Start/End: Complemental strand, 31605903 - 31605844
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||| |||||||| |||||||| ||||||||||||| | |||||||||||||    
T  31605903 tggtgttggcttgggaccttgaagtgtgctcctcctcaaggtctcaagttcgattctccc 31605844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 73 - 131
Target Start/End: Original strand, 4824992 - 4825050
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||||||| ||||||||||||||||| ||| ||||||||| ||||| ||||||||    
T  4824992 tggtgttggcttgggaccttggagtgtgctcctcttcaaggtctcaggtttgattctcc 4825050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 15581218 - 15581138
Alignment:
Q  51 taacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||| || ||| | ||||||||||||||| ||||||||||||||||| || || ||||||| |||||| ||||||||    
T  15581218 taacccacttgggttggcctggtggtgttggcttgggaccttggagtgtgctcct-ctaaaggtctcaggttcaattctccc 15581138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 132
Target Start/End: Complemental strand, 19528403 - 19528323
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||| || ||| | ||||||| ||||||| ||| ||  ||||||||| ||||||||||||| |||||||||||||||    
T  19528403 aacccacttgggttggcctggtggtattggcttgggatctatgagtgtgctcctcctcaaggtctcaggttcgattctccc 19528323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 72 - 128
Target Start/End: Original strand, 39012311 - 39012366
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||||| |||||    
T  39012311 gtggtgttggcttgggaccttggagtgtgct-cttctcaaggtcttaggtttgattc 39012366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 132
Target Start/End: Original strand, 952529 - 952591
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||||| |||||| ||||||||||  ||||||| |||| ||||| |||||||||    
T  952529 tggtggtgttggcttgggacctgggagtgtgctcatcctcaaagtctcaggttagattctccc 952591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 131
Target Start/End: Original strand, 24019044 - 24019102
Alignment:
Q  74 ggtgttggctttggaccttgg-agtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    ||||||||||| || |||| | |||||||| ||||||||||||||||||||||||||||    
T  24019044 ggtgttggcttgggtcctttgtagtgtgctcctcctcaaggtcttaggttcgattctcc 24019102  T

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Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 36371490 - 36371548
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| | |||| |||||||||| ||||||||||||| |||||||||||||    
T  36371490 gtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctc 36371548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 37047003 - 37047060
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||||||||||||| ||||||||||||||||| || |||||||||| ||||| |||||    
T  37047003 tggtggtgttggcttgggaccttggagtgtgctcct-ctcaaggtctcaggtttgattc 37047060  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 36428731 - 36428792
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||||| | |||||||||| |||| ||||||||||||| | ||| |||||||||    
T  36428731 ggtggtgttggcttggtaccttggagtatgctcctcctcaaggtctcatgtttgattctccc 36428792  T

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Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 130
Target Start/End: Complemental strand, 15786370 - 15786318
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||| || |||||||||| ||||||||||||| |||||||||||||    
T  15786370 ttggcttgggatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 15786318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 17297004 - 17297064
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||| | |||| ||||||||||||||||| ||||||||||||| | ||| |||||||||    
T  17297004 gtggtggtagcttgggaccttggagtgtgctcctcctcaaggtctcatgtttgattctccc 17297064  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 19940930 - 19940870
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| |||| || |||||||||||||| ||||| ||||||| ||||| |||||||    
T  19940930 tggtggtgttagcttgggtccttggagtgtgctcctccttaaggtctcaggtttgattctc 19940870  T

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Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 52030008 - 52029933
Alignment:
Q  57 actcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||| ||| || |||||| ||| |||  ||||| |||||||||| || |||||||||| |||||||||||||||    
T  52030008 actcgggttggctaggtggtattgacttgagacctaggagtgtgctccttctcaaggtctcaggttcgattctccc 52029933  T

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Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 6128044 - 6127983
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||| || ||||||||||| ||||| || |||||||||| | |||||||||||||    
T  6128044 tggtggtgttggtttgggaccttggagcgtgctcct-ctcaaggtctcaagttcgattctccc 6127983  T

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Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 8177238 - 8177180
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| ||| || |||||||||| ||||||||||| | |||||||||||||    
T  8177238 gtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctc 8177180  T

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Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 10526843 - 10526901
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| |||||| ||||| |||| ||||||||||||| || ||||||||||    
T  10526843 gtggtattggcttgggacctgggagtttgctcctcctcaaggtctcagattcgattctc 10526901  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 11063576 - 11063634
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| ||||||   |||||| | |||||||||||||||||||||||||||    
T  11063576 gtggtattggcttgggacctgaaagtgtgttcctcctcaaggtcttaggttcgattctc 11063634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 16170036 - 16169974
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||| ||| |||||| |||||||| | ||||||||||| | |||||||||||||||    
T  16170036 tggtggtattgacttgggacctgggagtgtgttcctcctcaaggtttcaggttcgattctccc 16169974  T

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Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 30043676 - 30043622
Alignment:
Q  48 atataacccactcggattgacttggtggtgttggctttggaccttggagtgtgct 102  Q
    |||||||||||  || ||||||||||||||| |||||  ||||||||||||||||    
T  30043676 atataacccacatgggttgacttggtggtgtaggcttgagaccttggagtgtgct 30043622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 33700829 - 33700771
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| | | || |||||||||| ||||||||||||| |||||||||||||    
T  33700829 gtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 33700771  T

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Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 132
Target Start/End: Original strand, 39966127 - 39966173
Alignment:
Q  86 ggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||||||||||| || ||||||||||||| ||||||| |||||||    
T  39966127 ggaccttggagtgtactcctcctcaaggtctcaggttcgtttctccc 39966173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 132
Target Start/End: Original strand, 45266856 - 45266914
Alignment:
Q  74 ggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||| ||| || | ||||||| |||| ||||||||||||| |||||||||||||||    
T  45266856 ggtgttgacttggggctttggagtttgctcctcctcaaggtctcaggttcgattctccc 45266914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 2799903 - 2799940
Alignment:
Q  93 ggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  2799903 ggagtgtgctcctcctcaaggtctcaggttcgattctc 2799940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 130
Target Start/End: Original strand, 3265965 - 3266002
Alignment:
Q  93 ggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    |||||||||| ||||||||||||| |||||||||||||    
T  3265965 ggagtgtgctcctcctcaaggtctcaggttcgattctc 3266002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 78 - 130
Target Start/End: Original strand, 4566574 - 4566626
Alignment:
Q  78 ttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| | |||| |||||||||| ||||||| ||||| |||||||||||||    
T  4566574 ttggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctc 4566626  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 128
Target Start/End: Original strand, 6122822 - 6122870
Alignment:
Q  80 ggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattc 128  Q
    ||||| |||| | |||||||||| ||||||||||||| |||||||||||    
T  6122822 ggcttgggacttgggagtgtgctcctcctcaaggtctcaggttcgattc 6122870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 125
Target Start/End: Original strand, 9570664 - 9570716
Alignment:
Q  73 tggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcga 125  Q
    ||||||||||||  ||||||||||||||||  |||||||||||| || |||||    
T  9570664 tggtgttggcttgagaccttggagtgtgctcttcctcaaggtctcagattcga 9570716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 164
Target Start/End: Original strand, 21694446 - 21694557
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc-ca-tgccaattttcgtaga 149  Q
    |||||||| || ||||| ||||||| |||||||  ||| | ||||||||||   ||||||||||| |||||||||||| | || |||||||||   | ||    
T  21694446 aacccacttgggttgacctggtggtattggcttgagacttgggagtgtgct---cctcaaggtctcaggttcgattcttctcagtgccaatttggctgga 21694542  T
Q  150 ctagtttagtttctt 164  Q
    |||||||||||||||    
T  21694543 ctagtttagtttctt 21694557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 27430139 - 27430199
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||||| || |||| ||| ||| | || |||||||||| |||||||||||||||    
T  27430139 gtggtgttggcttgggtccttagagcgtgttccttctcaaggtctcaggttcgattctccc 27430199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 34228892 - 34228951
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||||| |||||| |||||||| | || |||||||||| ||||| |||||||    
T  34228892 tggtggtgttggcttgggacctcggagtgtgttcct-ctcaaggtctcaggttggattctc 34228951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 129
Target Start/End: Complemental strand, 38947507 - 38947471
Alignment:
Q  93 ggagtgtgctactcctcaaggtcttaggttcgattct 129  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  38947507 ggagtgtgctcctcctcaaggtctcaggttcgattct 38947471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 130
Target Start/End: Original strand, 51814536 - 51814572
Alignment:
Q  94 gagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| ||||||||||||| |||||||||||||    
T  51814536 gagtgtgctcctcctcaaggtctcaggttcgattctc 51814572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 2527 - 2466
Alignment:
Q  71 ggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    |||||| |||| |||||| || |||||||||| ||||||||||||| |||||||||||||||    
T  2527 ggtggtattggttttggatctgggagtgtgctcctcctcaaggtctcaggttcgattctccc 2466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 70 - 130
Target Start/End: Complemental strand, 15381 - 15321
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||||||| |||||| |||||||||| |||||| |||||| |||||||||||||    
T  15381 tggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctc 15321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0337 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0337
Description:

Target: scaffold0337; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 1773 - 1831
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||  ||||| ||||||    
T  1773 gtggtgttggcttgggaccttggagtttgctcctcctcaaggtctagggttcaattctc 1831  T

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Target: scaffold0194 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0194
Description:

Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 13106 - 13044
Alignment:
Q  68 cttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||||| |||||||  || || |||||||||| ||||||||||||| |||||||||||||    
T  13106 cttggtggtattggcttgagatctgggagtgtgctcctcctcaaggtctcaggttcgattctc 13044  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 130
Target Start/End: Original strand, 11546 - 11606
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||||| ||||||| ||| || |||||||||| |||||| |||||| |||||||||||||    
T  11546 tggtggtattggcttgggatctgggagtgtgctcctcctcgaggtctcaggttcgattctc 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0065 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 116
Target Start/End: Original strand, 12209 - 12253
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtct 116  Q
    ||||||||||||| |||||||||||| |||| |||||||||||||    
T  12209 gtggtgttggcttgggaccttggagtttgctcctcctcaaggtct 12253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 131
Target Start/End: Complemental strand, 2985 - 2906
Alignment:
Q  52 aacccactcggattgacttggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctcc 131  Q
    |||||||| || ||| ||||||||| |||| || |||||||| |||||| | ||||| ||||||| | ||||||||||||    
T  2985 aacccacttgggttggcttggtggttttggtttgggaccttgaagtgtgatcctccttaaggtctcaagttcgattctcc 2906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0236 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0236
Description:

Target: scaffold0236; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 70 - 132
Target Start/End: Complemental strand, 24898 - 24836
Alignment:
Q  70 tggtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctccc 132  Q
    ||||||||||| ||| || ||||||||| |||| ||||||||||||| || ||||||| ||||    
T  24898 tggtggtgttgacttggggccttggagtttgctcctcctcaaggtctcagattcgattgtccc 24836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 20018 - 19960
Alignment:
Q  72 gtggtgttggctttggaccttggagtgtgctactcctcaaggtcttaggttcgattctc 130  Q
    ||||| ||||||| | |||| ||||| |||| ||||||||||||| |||||||||||||    
T  20018 gtggtattggcttggaacctgggagtatgctcctcctcaaggtctcaggttcgattctc 19960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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