View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_21 (Length: 313)
Name: NF9501_low_21
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_21 |
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Alignment Details
Target: chr8 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 18 - 303
Target Start/End: Complemental strand, 40509976 - 40509691
Alignment:
| Q |
18 |
cttgcaatatgaagcttaatatgtagaagagagaacaccacacgtggattcagcgcaaagaactttatacaacatcggagtaaaacttgtttaaactttt |
117 |
Q |
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| T |
40509976 |
cttgcaatatgaagcttaatatgtagaagagagaacaccacacgtggattcagcgcaaagaactttatacaacatcggagtaaaacttgtttaaactttt |
40509877 |
T |
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| Q |
118 |
aacaacatcattttagaatatggtggtaggtagcctattctaacaactcatattggctagagtcagtaaaattaatttgaatactgatactaccatatgc |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40509876 |
aacaacatcactttagaatatggtggtaggtagcctattctaacaactcatattggctagagtcagtaaaattaatttgaatactgatactaccatatgc |
40509777 |
T |
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| Q |
218 |
acgagagctaaagatcactatccaaagaaagaacattggatagttgaatctccttaccttaattttaccccgaaccacaggttctg |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
40509776 |
acgagagctaaagatcactatccaaagaaagaacattggacagttgaatctccttaccttaattttaccccgaaccagaggatctg |
40509691 |
T |
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