View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9501_low_22 (Length: 308)
Name: NF9501_low_22
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_22 |
 | |
|
| [»] scaffold0199 (1 HSPs) |
| | |
|
| [»] scaffold0475 (1 HSPs) |
| | |
|
| [»] scaffold0288 (1 HSPs) |
| | |
|
| [»] scaffold1335 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 32)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 78 - 297
Target Start/End: Complemental strand, 4603662 - 4603443
Alignment:
| Q |
78 |
acatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtc |
177 |
Q |
| |
|
|||||||||||| |||||||||||| |||||||||||||||| | |||||||||||||||| || ||||||||| ||| |||||||||||||||||| |
|
|
| T |
4603662 |
acatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttgaaactagcaaaactatttcaccttagaggatttcacataacctttgtc |
4603563 |
T |
|
| Q |
178 |
aacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggactaa |
277 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4603562 |
aacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagacggcttcactgattttagctttgaaacaatcccagatggactaa |
4603463 |
T |
|
| Q |
278 |
caccaatggaaggtgatgat |
297 |
Q |
| |
|
|||| ||||||||||||||| |
|
|
| T |
4603462 |
caccgatggaaggtgatgat |
4603443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 38 - 295
Target Start/End: Original strand, 4258709 - 4258969
Alignment:
| Q |
38 |
aagtttcatcaaagatgagttattttgctgataa---aaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaact |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
4258709 |
aagtttcctcaaagatgagttattttgctgataataaaaagccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaact |
4258808 |
T |
|
| Q |
135 |
agcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagat |
234 |
Q |
| |
|
||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| | ||| |
|
|
| T |
4258809 |
agctaagcttcttcactttaaaggttttcacataacctttgtcaacactgaatataatcacaaacgtttgctcaaatcaagaggtgaaaatgccgttgat |
4258908 |
T |
|
| Q |
235 |
ggtttcactgattttagctttgaaacaatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
||||||| |||||||| |||||| || || | |||||| || || ||| |||||||||||| |
|
|
| T |
4258909 |
ggtttcattgattttacctttgagactattcaagatggtctgactccagtggaaggtgatg |
4258969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 66 - 295
Target Start/End: Complemental strand, 4558689 - 4558460
Alignment:
| Q |
66 |
tgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcac |
165 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||| ||||||||||||| ||| |||||| |
|
|
| T |
4558689 |
tgataaaaaaccacatgctgtgttaattccatatccagttcaaggccatatcaatccattgttgaaactagcaaaacttcttcaccttagaggatttcac |
4558590 |
T |
|
| Q |
166 |
ataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcc |
265 |
Q |
| |
|
||||||| ||| |||||||||||||| |||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||||||| || || | |
|
|
| T |
4558589 |
ataacctatgtaaacactgaatacaaccacaaacggttgctcaagtcaagaggtccaaatgcctttgatggtttcactgattttagctttgagactattc |
4558490 |
T |
|
| Q |
266 |
cagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
| ||||| |||| |||| ||| ||||||| |
|
|
| T |
4558489 |
cggatggtttaactccaacggatggtgatg |
4558460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 38 - 295
Target Start/End: Complemental strand, 4623905 - 4623642
Alignment:
| Q |
38 |
aagtttcatcaaagatgagttattttgctgataa------aaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaa |
131 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||| ||||||||| |||||| ||||||||| | ||||| || |
|
|
| T |
4623905 |
aagtttcatcaaagatgagttattttgctaataataataaaaagccacatgctgtgttgattgcatatccagttcaaggtcatatcaatccattgttcaa |
4623806 |
T |
|
| Q |
132 |
actagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcctta |
231 |
Q |
| |
|
|||||||||||||||| |||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||| || ||||| |
|
|
| T |
4623805 |
actagcaaagcttctttaccttaaaggctttcacataacctttggtcacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggccttt |
4623706 |
T |
|
| Q |
232 |
gatggtttcactgattttagctttgaaacaatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
||||||||||| || |||| |||||| || || |||||||| ||||||||||||||||||||| |
|
|
| T |
4623705 |
gatggtttcacggactttaactttgagaccattccagatggtttaacaccaatggaaggtgatg |
4623642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 4594564 - 4594345
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
4594564 |
ccacatgctgtgttgattccagctccacttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcacataacctttg |
4594465 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||| ||||||||||||||| || |||||||| || |
|
|
| T |
4594464 |
tcaacactgaatacaatcataaacgtttgctcaaatcaagaggtccaaatgccttagatggtttccctggttttagctttgaaaccataccagatggtct |
4594365 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4594364 |
aacaccaatggaaggtgatg |
4594345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 45 - 297
Target Start/End: Complemental strand, 4482450 - 4482198
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
||||||||||||| | ||||| || ||||| |||||||| ||||| | ||||| |||||||||||||||||||||| | ||||||||| ||| ||| || |
|
|
| T |
4482450 |
atcaaagatgagtaactttgcagaaaaaaaaccacatgcagtgttgactccatttccagctcaaggccatatcaatgcattgttgaaaataggaaaacta |
4482351 |
T |
|
| Q |
145 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactg |
244 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| || ||||| ||||||||||||| |
|
|
| T |
4482350 |
cttcaccttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgtttgctaaaatcaaggggtccaaaagcctttgatggtttcactg |
4482251 |
T |
|
| Q |
245 |
attttagctttgaaacaatcccagatggactaacaccaatggaaggtgatgat |
297 |
Q |
| |
|
|||||| ||||||||| || |||||||| |||| ||||| |||||||||||| |
|
|
| T |
4482250 |
attttacctttgaaacgataccagatggtttaactccaattgaaggtgatgat |
4482198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 45 - 272
Target Start/End: Original strand, 4488740 - 4488967
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
||||||||||||| | |||| || | |||||||||||| ||||||| |||| ||||| |||||||||||||||| | ||||||||||||| ||| || |
|
|
| T |
4488740 |
atcaaagatgagtaactttgaagagagaaagccacatgcagtgttaacaccatttccagttcaaggccatatcaatgcattgttgaaactaggaaaacta |
4488839 |
T |
|
| Q |
145 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactg |
244 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
4488840 |
cttcaccttagaggatttcacataacctttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttaactg |
4488939 |
T |
|
| Q |
245 |
attttagctttgaaacaatcccagatgg |
272 |
Q |
| |
|
||||||||||||| || || |||||||| |
|
|
| T |
4488940 |
attttagctttgagactattccagatgg |
4488967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 4507496 - 4507246
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
||||||||||||| ||||||| | | ||| |||||||||||||| |||||||||||| ||||||||||||||||| | ||||| |||||||| |||||| |
|
|
| T |
4507496 |
atcaaagatgagtaattttgcaaagagaaaaccacatgctgtgttgattccatatccaactcaaggccatatcaatccattgttcaaactagctaagctt |
4507397 |
T |
|
| Q |
145 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactg |
244 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
4507396 |
cttcaccttcgaggctttcacataacctttgttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtgaaaatgcctttgatggtttcactg |
4507297 |
T |
|
| Q |
245 |
attttagctttgaaacaatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||| |||||| || | |||||||| |||| |||||||| ||||||| |
|
|
| T |
4507296 |
attttaactttgagactctaccagatggtttaactccaatggatggtgatg |
4507246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 73 - 272
Target Start/End: Complemental strand, 4517897 - 4517698
Alignment:
| Q |
73 |
aagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacct |
172 |
Q |
| |
|
||||||||||| ||| ||| |||||||||| |||||||||||||||| ||||||| ||||||||||| |||||||| |||| ||| ||||||||||||| |
|
|
| T |
4517897 |
aagccacatgcagtgataactccatatccacttcaaggccatatcaatccgttgttaaaactagcaaaacttcttcatcttagaggctttcacataacct |
4517798 |
T |
|
| Q |
173 |
ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatgg |
272 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||| || || |||||||| |
|
|
| T |
4517797 |
ttgtcaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatgg |
4517698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 45 - 295
Target Start/End: Complemental strand, 3173588 - 3173338
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
||||||||||||| | ||||| | | ||| |||||||| ||||||| ||||||||||| |||||||||||||||| | ||||||||||||||||| || |
|
|
| T |
3173588 |
atcaaagatgagtaactttgcaaagagaaaaccacatgcagtgttaactccatatccagttcaaggccatatcaatgcattgttgaaactagcaaaacta |
3173489 |
T |
|
| Q |
145 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactg |
244 |
Q |
| |
|
|||||| ||| ||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| |||||||| |||||||||| || |
|
|
| T |
3173488 |
cttcactttagaggctttcacataacctttgtaaacactgaatacaatcacaaacggttgctcaaatcaaagggtccaaatgcctttgatggtttcaatg |
3173389 |
T |
|
| Q |
245 |
attttagctttgaaacaatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||| |||||| || || |||||||| |||| ||||||||||||||| |
|
|
| T |
3173388 |
attttaactttgagactataccagatggtttaacttcaatggaaggtgatg |
3173338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 4618855 - 4618636
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
||||||| |||| | ||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
4618855 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
4618756 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
| ||||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||||| || |||| |||||| | || |||||||| | |
|
|
| T |
4618755 |
ttaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaggcttttgatggtttcacggactttaactttgagagcattccagatggttt |
4618656 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
4618655 |
aacaccaatggaaggtgatg |
4618636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 70 - 272
Target Start/End: Complemental strand, 4576015 - 4575813
Alignment:
| Q |
70 |
aaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa |
169 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| |||||||||||||||| | ||||||||| ||||||| || |||||||||| ||| |||||||||| |
|
|
| T |
4576015 |
aaaaagccacatgcagtgttaactccatttccagttcaaggccatatcaatgcattgttgaaaatagcaaaactgcttcaccttagaggctttcacataa |
4575916 |
T |
|
| Q |
170 |
cctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccaga |
269 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| |||||| || || ||||| |
|
|
| T |
4575915 |
cctttgttaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactataccaga |
4575816 |
T |
|
| Q |
270 |
tgg |
272 |
Q |
| |
|
||| |
|
|
| T |
4575815 |
tgg |
4575813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 73 - 295
Target Start/End: Complemental strand, 4627707 - 4627485
Alignment:
| Q |
73 |
aagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacct |
172 |
Q |
| |
|
||||||||||||||||| ||||||| |||| |||||||||||||||| | ||||||| ||||||||| | |||||||||| ||| ||||||||||||| |
|
|
| T |
4627707 |
aagccacatgctgtgttgattccatttccacttcaaggccatatcaatccattgttgatactagcaaaattacttcaccttagaggctttcacataacct |
4627608 |
T |
|
| Q |
173 |
ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatgg |
272 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||| |||||| || || |||||||| |
|
|
| T |
4627607 |
ttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtgaaaatgcctttgatggtttcgatgattttacctttgagaccataccagatgg |
4627508 |
T |
|
| Q |
273 |
actaacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||||| | |||||||||| |
|
|
| T |
4627507 |
tttaacaccactagaaggtgatg |
4627485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 66 - 257
Target Start/End: Complemental strand, 4572530 - 4572339
Alignment:
| Q |
66 |
tgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcac |
165 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||||| |||||||||||||||| | |||||| |||||||||| |||||||||||| |||||||||| |
|
|
| T |
4572530 |
tgataaaaaaccacatgctgtgttaatcccatatccagttcaaggccatatcaatccattgttgcaactagcaaaatttcttcaccttagaggttttcac |
4572431 |
T |
|
| Q |
166 |
ataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttga |
257 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||| |||||||| ||||||||||| |||||| |||||| |
|
|
| T |
4572430 |
ataacctatgtaaacactgaatacaatcacaaacggttgctcaagtcaagaggtcaaaatgcctttgatggtttcaccaattttaactttga |
4572339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 45 - 257
Target Start/End: Complemental strand, 4471499 - 4471287
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
|||||| |||||| ||||||| | | ||||||||||||||| || ||||||| |||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
4471499 |
atcaaatatgagtaattttgcaaagacaaagccacatgctgtattgattccatgtccagctcaaggccatatcaatgcattgttgaaactagcaaagctt |
4471400 |
T |
|
| Q |
145 |
cttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactg |
244 |
Q |
| |
|
|||||||||| ||| ||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| || | | ||||||||||||| |
|
|
| T |
4471399 |
cttcaccttagaggctttcacataacgtttgtcaacactgaatacaatcacaaagccttgctcaattcaagaggtcctgattctcttgatggtttcactg |
4471300 |
T |
|
| Q |
245 |
attttagctttga |
257 |
Q |
| |
|
| |||| |||||| |
|
|
| T |
4471299 |
actttaactttga |
4471287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 52 - 272
Target Start/End: Complemental strand, 4581592 - 4581372
Alignment:
| Q |
52 |
atgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcacc |
151 |
Q |
| |
|
|||||| ||||| ||||||||||||||||||| ||||| |||||||||||| |||||| ||||||| | | || | | |||||||||||||||||||| |
|
|
| T |
4581592 |
atgagtcatttttctgataaaaagccacatgcagtgttgattccatatccacttcaaggacatatcactccattaataacactagcaaagcttcttcacc |
4581493 |
T |
|
| Q |
152 |
ttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttag |
251 |
Q |
| |
|
||| ||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| || || || ||||||||||| ||||||| |
|
|
| T |
4581492 |
ttagaggctttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaaagcgtttgatggtttcaccgattttac |
4581393 |
T |
|
| Q |
252 |
ctttgaaacaatcccagatgg |
272 |
Q |
| |
|
|||||| || || |||||||| |
|
|
| T |
4581392 |
ctttgagactattccagatgg |
4581372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 72 - 290
Target Start/End: Original strand, 4265627 - 4265845
Alignment:
| Q |
72 |
aaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc |
171 |
Q |
| |
|
|||||||||||||||||| |||||| |||| |||||||||||||||| | ||||| || |||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
4265627 |
aaagccacatgctgtgttgattccagctccatttcaaggccatatcaatgcattgttcaatctaggaaagcttcttcaccttagaggctttcacataacc |
4265726 |
T |
|
| Q |
172 |
tttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatg |
271 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||| | | |||||||||| ||| |||| ||||| || || ||||||| |
|
|
| T |
4265727 |
tttgtcaacactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaattctcttgatggtttcagtgactttaagtttgagaccataccagatg |
4265826 |
T |
|
| Q |
272 |
gactaacaccaatggaagg |
290 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
4265827 |
gtctaactccaatggaagg |
4265845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 72 - 257
Target Start/End: Complemental strand, 4462765 - 4462580
Alignment:
| Q |
72 |
aaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc |
171 |
Q |
| |
|
|||||||||||||||||| ||||||| |||| | ||||||||||||||| | ||||||||||||| ||| || |||||||||| |||||||||||||||| |
|
|
| T |
4462765 |
aaagccacatgctgtgttgattccatgtccatcccaaggccatatcaatgcattgttgaaactaggaaaactacttcaccttagaggttttcacataacc |
4462666 |
T |
|
| Q |
172 |
tttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttga |
257 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||| ||||||||||||||| | |||||||||||||||| |||| |||||| |
|
|
| T |
4462665 |
tttgtcaacactgaatacaatcacaattgcttgctcaattcaagaggtcctaattctctagatggtttcactgactttaactttga |
4462580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 76 - 257
Target Start/End: Original strand, 4612292 - 4612473
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
|||||||| ||||||||||||||||||| |||||||||||||||| | || | ||||||||||| ||||||||||||| ||| ||||||||||| || | |
|
|
| T |
4612292 |
ccacatgcagtgttaattccatatccagttcaaggccatatcaatccattaatcaaactagcaaaacttcttcaccttagaggctttcacataacattcg |
4612391 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttga |
257 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| | ||||||||||||||||| |||||| |
|
|
| T |
4612392 |
tcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgttggtttcactgattttacctttga |
4612473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 79 - 295
Target Start/End: Complemental strand, 4587183 - 4586967
Alignment:
| Q |
79 |
catgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtca |
178 |
Q |
| |
|
|||||||||||||| |||| ||||| |||||||||||||||| | |||||||||||||| || |||||||||||| ||| ||||||||||||||||| | |
|
|
| T |
4587183 |
catgctgtgttaatcccatctccagttcaaggccatatcaatccattgttgaaactagctaaacttcttcaccttcgaggatttcacataacctttgtaa |
4587084 |
T |
|
| Q |
179 |
acactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggactaac |
278 |
Q |
| |
|
|||||||||||||||||||||| ||||| || ||||||| ||| |||||||| |||| ||| ||||||||||||||||| || || |||||||| |||| |
|
|
| T |
4587083 |
acactgaatacaatcacaaacggttgcttaagtcaagagctccaaatgcctttgatgatttaactgattttagctttgagactattccagatggtttaac |
4586984 |
T |
|
| Q |
279 |
accaatggaaggtgatg |
295 |
Q |
| |
|
|||| ||| ||||||| |
|
|
| T |
4586983 |
tccaacggatggtgatg |
4586967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 76 - 287
Target Start/End: Original strand, 4513553 - 4513764
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||||||||| | |||| | | ||||||| || |||||||||| ||| |||||||||||||||| |
|
|
| T |
4513553 |
ccacatgctgtgttgattccatatccacttcaaggccatatcaatccaatgttcagattagcaaaactacttcaccttagaggctttcacataacctttg |
4513652 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||||| ||||||| || || || ||||| | |
|
|
| T |
4513653 |
ttaacaccgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgcttttgatggtttcaccgattttcgctttgagactattcctgatggttt |
4513752 |
T |
|
| Q |
276 |
aacaccaatgga |
287 |
Q |
| |
|
||| |||||||| |
|
|
| T |
4513753 |
aactccaatgga |
4513764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 4565583 - 4565364
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
|||||||||||||| |||||| |||| |||||| ||||| ||| | ||||| ||||| ||||| ||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
4565583 |
ccacatgctgtgttgattccagctccatttcaaggacatataaatccattgttcaaacttgcaaaacttcttcaccttagaggatttcatataacctttg |
4565484 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||||||||| | || |||| |||||||||| || |||||||| || |
|
|
| T |
4565483 |
tcaacactgaatacaatcataaacgattgctaaaatcaagaggtccaaatgccttagatggttcccgtggtttttgctttgaaaccataccagatggtct |
4565384 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||| || |||||||||| |
|
|
| T |
4565383 |
aacaccgatagaaggtgatg |
4565364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #23
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 93 - 272
Target Start/End: Complemental strand, 4569607 - 4569432
Alignment:
| Q |
93 |
tccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaat |
192 |
Q |
| |
|
|||||||||| |||||||||||||||| | || |||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| || ||| |
|
|
| T |
4569607 |
tccatatccacttcaaggccatatcaatccattattgaaactagcaaaacttcttcaccttagaggctttcacataacctttgtcaacaccga----aat |
4569512 |
T |
|
| Q |
193 |
cacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatgg |
272 |
Q |
| |
|
||||||| ||||||||||||||||||||| || ||||| ||||||||||||||||||| |||||| || || |||||||| |
|
|
| T |
4569511 |
cacaaacatttgctcaaatcaagaggtccaaaagcctttgatggtttcactgattttacctttgagactattccagatgg |
4569432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #24
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 70 - 295
Target Start/End: Complemental strand, 4562226 - 4561997
Alignment:
| Q |
70 |
aaaaagccacatgctgtgttaatt----ccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcac |
165 |
Q |
| |
|
|||| ||||||||| ||||||||| |||| ||||| |||||| ||||||||| | ||||||||| ||||||| || |||||||| | ||| |||||| |
|
|
| T |
4562226 |
aaaaggccacatgcagtgttaattaactccatttccagttcaaggtcatatcaatgcattgttgaaaatagcaaaactgcttcacctaagaggctttcac |
4562127 |
T |
|
| Q |
166 |
ataa-cctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatc |
264 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||||| |||| |||||| || || |
|
|
| T |
4562126 |
ataaacctttgttaacactgaatacaatcacaaacgtttgct-aaatcaagaggtgaaaatgcctttgatggtttcactgactttaactttgagactata |
4562028 |
T |
|
| Q |
265 |
ccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||||| |||| |||| ||| ||||||| |
|
|
| T |
4562027 |
ccagatggtttaactccaaaggatggtgatg |
4561997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #25
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 160 - 295
Target Start/End: Original strand, 4502951 - 4503086
Alignment:
| Q |
160 |
tttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaa |
259 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |||||||| |||||| | |
|
|
| T |
4502951 |
tttcacataacctttgtcaacaccgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgcctttgatggtttcaatgattttacctttgaga |
4503050 |
T |
|
| Q |
260 |
caatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
| || |||||||| |||| || |||||||||||| |
|
|
| T |
4503051 |
ccataccagatggtttaactccggtggaaggtgatg |
4503086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #26
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 38 - 243
Target Start/End: Original strand, 4255354 - 4255550
Alignment:
| Q |
38 |
aagtttcatcaaagatgagttattttgctgataaaaa---gccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaact |
134 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| || ||||||||||||||| ||||||||||||| |||||||||||||||| || || ||||| |
|
|
| T |
4255354 |
aagtttcatcaaagatgagttattttactgataataaaatgccacatgctgtgttgattccatatccagttcaaggccatatcaatctattattcaaact |
4255453 |
T |
|
| Q |
135 |
agcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagat |
234 |
Q |
| |
|
|||||| | ||||| |||||||| |||||||||||| ||||||||||||||||| |||||| ||||||||||||| || ||||| ||| |
|
|
| T |
4255454 |
agcaaaattacttcatcttaaagg------------ctttgtcaacaccgaatacaatcacaaacgcttgctcgaatcaagaggtccaaaagcctttgat |
4255541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 130 - 295
Target Start/End: Complemental strand, 4599663 - 4599498
Alignment:
| Q |
130 |
aaactagcaaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgc-c |
228 |
Q |
| |
|
|||||||||||| |||||||||||| ||| ||| |||||||||| || ||||| || |||||||||||||| |||||||||||||||||||||||| | | |
|
|
| T |
4599663 |
aaactagcaaagattcttcaccttagaggattttacataaccttcgtgaacaccgagtacaatcacaaacgcttgctcaaatcaagaggtcctaattctc |
4599564 |
T |
|
| Q |
229 |
ttagatggtttcactgattttagctttgaaacaatcccagatggactaacaccaatggaaggtgatg |
295 |
Q |
| |
|
|| ||||||||||||||||| ||| || || || |||||||| |||| ||||| || ||||||| |
|
|
| T |
4599563 |
gta-atggtttcactgatttttccttcgagactattccagatggtttaactccaatagatggtgatg |
4599498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #28
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 45 - 154
Target Start/End: Original strand, 4497788 - 4497897
Alignment:
| Q |
45 |
atcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagctt |
144 |
Q |
| |
|
||||||||||||| | |||| || |||||||||||||| ||||||| ||||| |||| | |||||||||||||| | ||||||||||||| ||| | |
|
|
| T |
4497788 |
atcaaagatgagtaactttgaagagaaaaagccacatgcagtgttaactccatttccaatttaaggccatatcaatccattgttgaaactaggaaaatta |
4497887 |
T |
|
| Q |
145 |
cttcacctta |
154 |
Q |
| |
|
|||||||||| |
|
|
| T |
4497888 |
cttcacctta |
4497897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 295
Target Start/End: Original strand, 4298172 - 4298291
Alignment:
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
||||||| |||||||||||||||| ||||| ||||||| ||||| || || || ||||||||||| | ||||||||||| || || |||||||| || |
|
|
| T |
4298172 |
tcaacaccgaatacaatcacaaacacctgctcgaatcaaggggtccaaaagcttttgatggtttcaccaactttagctttgagactattccagatggtct |
4298271 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatg |
295 |
Q |
| |
|
|| |||| ||||||||||| |
|
|
| T |
4298272 |
gactccaacggaaggtgatg |
4298291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 220
Target Start/End: Original strand, 4483534 - 4483569
Alignment:
| Q |
185 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
4483534 |
aatacaatcacaaacgtttgctcaaatcaagaggtc |
4483569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 220
Target Start/End: Complemental strand, 4496222 - 4496188
Alignment:
| Q |
186 |
atacaatcacaaacgtttgctcaaatcaagaggtc |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4496222 |
atacaatgacaaacgtttgctcaaatcaagaggtc |
4496188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 120
Target Start/End: Complemental strand, 4493459 - 4493415
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaat |
120 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||||||| ||||||||| |
|
|
| T |
4493459 |
ccacatgcagtgttgattccatttccagctcaaggtcatatcaat |
4493415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 1e-75; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 76 - 295
Target Start/End: Complemental strand, 1282987 - 1282768
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| || |||||||||| ||| ||| |||||||||||| |
|
|
| T |
1282987 |
ccacatgctgtgttgattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaactacttcaccttagaggcttttacataacctttg |
1282888 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
| || |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
1282887 |
ttaatactgaatacaatcacaaacgcttgctcaaatcaagaggtccaaatgccctagatggtttcactgattttagctttgaaaccatcccagatggtct |
1282788 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatg |
295 |
Q |
| |
|
|||| || | |||||||||| |
|
|
| T |
1282787 |
aacatcactagaaggtgatg |
1282768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 154 - 204
Target Start/End: Complemental strand, 35776322 - 35776272
Alignment:
| Q |
154 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35776322 |
aaaggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35776272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 35842126 - 35842079
Alignment:
| Q |
157 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35842126 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35842079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 35854634 - 35854587
Alignment:
| Q |
157 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35854634 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35854587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 35869243 - 35869196
Alignment:
| Q |
157 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35869243 |
ggttttcacataacctttgtgaacactgaattcaaccacaaacgtttg |
35869196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 204
Target Start/End: Complemental strand, 35759894 - 35759847
Alignment:
| Q |
157 |
ggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
||||| |||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
35759894 |
ggtttccacataacctttgtgaacactgaattcaaccacaaacgtttg |
35759847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0199 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 1311 - 1093
Alignment:
| Q |
77 |
cacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgt |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| ||| | ||| |||||| ||| |
|
|
| T |
1311 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1212 |
T |
|
| Q |
177 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggacta |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1211 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1112 |
T |
|
| Q |
277 |
acaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
1111 |
acaccactagaaggtgatg |
1093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 77 - 295
Target Start/End: Complemental strand, 1676074 - 1675856
Alignment:
| Q |
77 |
cacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttgt |
176 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||| | ||||| ||||||||||| ||| ||||||||| ||| | ||| |||||| ||| |
|
|
| T |
1676074 |
cacatgctgtgttcattccatatccagctcaaggccatatcaatccattgttcaaactagcaaaacttattcaccttagaggctctcatgtaacctatgt |
1675975 |
T |
|
| Q |
177 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggacta |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
1675974 |
caacactgaatacaatcacaaacgtttgctcaaatcaagaggtccaactgccttggatggtttcactgattttagctttgaaaccatcccagatggtcta |
1675875 |
T |
|
| Q |
277 |
acaccaatggaaggtgatg |
295 |
Q |
| |
|
|||||| | |||||||||| |
|
|
| T |
1675874 |
acaccactagaaggtgatg |
1675856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 50 - 257
Target Start/End: Original strand, 20862358 - 20862565
Alignment:
| Q |
50 |
agatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttca |
149 |
Q |
| |
|
|||||||| |||||||||| ||||| |||||||| ||||||| |||||||||| |||||| ||||||||| | |||| ||||||||||| || ||||| |
|
|
| T |
20862358 |
agatgagtaattttgctgagaaaaaaccacatgcagtgttaactccatatccacttcaaggtcatatcaatccaatgttaaaactagcaaaactacttca |
20862457 |
T |
|
| Q |
150 |
ccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgatttt |
249 |
Q |
| |
|
||||| ||| ||| ||||||| |||||||| |||||||||||||||||||| ||||| || |||| ||||| | |||| |||||||||||||| ||| |
|
|
| T |
20862458 |
ccttagaggcttttacataacatttgtcaatactgaatacaatcacaaacgcttgcttaagtcaatgggtccaataccctttgatggtttcactgacttt |
20862557 |
T |
|
| Q |
250 |
agctttga |
257 |
Q |
| |
|
||||||| |
|
|
| T |
20862558 |
cgctttga |
20862565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 38 - 291
Target Start/End: Complemental strand, 3088337 - 3088084
Alignment:
| Q |
38 |
aagtttcatcaaagatgagttattttgctgataaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagc |
137 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||| |||||| ||||| ||| | ||||| |||||||| |
|
|
| T |
3088337 |
aagtttcatcaaagatgagttactttgttgataaaaagccacatgctgtgttgattccatatccacttcaaggtcatataaatccattgttaaaactagc |
3088238 |
T |
|
| Q |
138 |
aaagcttcttcaccttaaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggt |
237 |
Q |
| |
|
||| ||||||||||||||||| |||||||||||||||||||| || |||||||||||||| |||||||| |||||||||||| ||||| | | |||||| |
|
|
| T |
3088237 |
aaaacttcttcaccttaaaggctttcacataacctttgtcaataccgaatacaatcacaaccgtttgcttaaatcaagaggttctaattctcttgatggt |
3088138 |
T |
|
| Q |
238 |
ttcactgattttagctttgaaacaatcccagatggactaacaccaatggaaggt |
291 |
Q |
| |
|
|||||||||||| |||||| || |||| |||||| ||||| |||||||||||| |
|
|
| T |
3088137 |
ttcactgattttgtctttgagactatccaagatggtctaactccaatggaaggt |
3088084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0475 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0475
Description:
Target: scaffold0475; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 70 - 297
Target Start/End: Complemental strand, 2384 - 2157
Alignment:
| Q |
70 |
aaaaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataa |
169 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| |||||||||||||||| | || || ||||||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
2384 |
aaaaaaccacatgctgtgttgattccatatccagttcaaggccatatcaatccattattcaaactagcaaagcttcttcaccttagaggctttcacataa |
2285 |
T |
|
| Q |
170 |
cctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccaga |
269 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |||| || || || || || |
|
|
| T |
2284 |
cctttgtcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccga |
2185 |
T |
|
| Q |
270 |
tggactaacaccaatggaaggtgatgat |
297 |
Q |
| |
|
||| |||| ||| |||||| ||||||| |
|
|
| T |
2184 |
tggtttaactccagtggaagatgatgat |
2157 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 76 - 297
Target Start/End: Original strand, 2025 - 2246
Alignment:
| Q |
76 |
ccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacctttg |
175 |
Q |
| |
|
||||||| |||| | ||||||||||||| |||||||||||||||| | ||||| ||||||||||||||||||||||||| ||| |||||||||||||||| |
|
|
| T |
2025 |
ccacatgttgtgatgattccatatccagttcaaggccatatcaatccattgttcaaactagcaaagcttcttcaccttagaggctttcacataacctttg |
2124 |
T |
|
| Q |
176 |
tcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatggact |
275 |
Q |
| |
|
||||||||||||||||||| ||||| |||||||||||||||||||||||||| | ||||||||| |||||||| |||| || || || || ||||| | |
|
|
| T |
2125 |
tcaacactgaatacaatcataaacgcttgctcaaatcaagaggtcctaatgctcttgatggtttcgctgatttttgcttcgagactattcccgatggttt |
2224 |
T |
|
| Q |
276 |
aacaccaatggaaggtgatgat |
297 |
Q |
| |
|
||| ||| |||||| ||||||| |
|
|
| T |
2225 |
aactccagtggaagatgatgat |
2246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 72 - 290
Target Start/End: Complemental strand, 24104653 - 24104435
Alignment:
| Q |
72 |
aaagccacatgctgtgttaattccatatccagctcaaggccatatcaattcgttgttgaaactagcaaagcttcttcaccttaaaggttttcacataacc |
171 |
Q |
| |
|
|||||| ||||||||||| |||||| |||| |||||| ||||||||| | ||||| ||||||| ||||||||||||||||| ||| |||||||||||| |
|
|
| T |
24104653 |
aaagccgcatgctgtgttgattccagctccatttcaaggtcatatcaatgcattgttcaaactaggaaagcttcttcaccttagaggctttcacataacc |
24104554 |
T |
|
| Q |
172 |
tttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatgccttagatggtttcactgattttagctttgaaacaatcccagatg |
271 |
Q |
| |
|
|| || ||||| ||||||||||||||||| |||||| ||||||||| ||||||| | | |||||||||| ||| |||| |||||| || || ||||||| |
|
|
| T |
24104553 |
ttcgtgaacaccgaatacaatcacaaacgcttgctcgaatcaagagatcctaattctcttgatggtttcaatgactttaactttgagaccataccagatg |
24104454 |
T |
|
| Q |
272 |
gactaacaccaatggaagg |
290 |
Q |
| |
|
| ||||| ||||||||||| |
|
|
| T |
24104453 |
gtctaactccaatggaagg |
24104435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 26903670 - 26903614
Alignment:
| Q |
169 |
acctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaat |
225 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| | || ||| | |||||||||||| |
|
|
| T |
26903670 |
acctttgttaacactgaatacaatcacaaacgtcttcttaaagctagaggtcctaat |
26903614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 26676482 - 26676426
Alignment:
| Q |
169 |
acctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaat |
225 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | || ||| | |||||||||||| |
|
|
| T |
26676482 |
acctttgttaacactgaatataatcacaaacgtcttcttaaagctagaggtcctaat |
26676426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 26948090 - 26948034
Alignment:
| Q |
169 |
acctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaat |
225 |
Q |
| |
|
|||||||| ||||||||||| |||||||||||| | || ||| | |||||||||||| |
|
|
| T |
26948090 |
acctttgttaacactgaatataatcacaaacgtcttcttaaagctagaggtcctaat |
26948034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 226
Target Start/End: Original strand, 1349579 - 1349641
Alignment:
| Q |
164 |
acataacctttgtcaacactgaatacaatcacaaacgtttgctcaaatcaagaggtcctaatg |
226 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||| || |||||||| | ||||||||||| |
|
|
| T |
1349579 |
acataacatttgtcaacactgaattcaaccacaaacgcttactcaaatccataggtcctaatg |
1349641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1335 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1335
Description:
Target: scaffold1335; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 204
Target Start/End: Original strand, 1921 - 1971
Alignment:
| Q |
154 |
aaaggttttcacataacctttgtcaacactgaatacaatcacaaacgtttg |
204 |
Q |
| |
|
|||||||| || ||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
1921 |
aaaggtttccatataacctttgtgaacactgaattcaaccacaaacgtttg |
1971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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