View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_23 (Length: 305)
Name: NF9501_low_23
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 974490 - 974221
Alignment:
| Q |
18 |
tgatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaa |
117 |
Q |
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| T |
974490 |
tgatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaa |
974391 |
T |
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| Q |
118 |
gaactaagagtgagtacaaaactccattatttccttaaacataannnnnnncttaagtataatataaccgttttaaataaagatctgcggctgcgatttg |
217 |
Q |
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| T |
974390 |
gaactaagagtgagtacaaaactccattatttccttaagcataatttttttcttaagtataatataaccgttttaaataaaggtctgcggctgcgatttg |
974291 |
T |
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| Q |
218 |
atacgtgacatcatgannnnnnnatatctctattactgcaagtcacgattgaagctgtatcaattgtgttt |
288 |
Q |
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| T |
974290 |
atacgtgacatcatga-ttttttatgtctctattactgcaatgcacgattgaagctgtatcaattgtgttt |
974221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 288
Target Start/End: Complemental strand, 5589673 - 5589400
Alignment:
| Q |
18 |
tgatcaagtgattacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttgaa |
117 |
Q |
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| T |
5589673 |
tgatctagtgattacacttatgtattctggttatgaaactgtttcaaccacttcaatgatggctgtgaaatacctccatgaccatcccaaagctcttgaa |
5589574 |
T |
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| Q |
118 |
gaactaagagtgagtac-aaaactccattatttccttaaacataa--nnnnnnncttaagtataatataaccgttttaaataaagatctgcggctgcgat |
214 |
Q |
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| T |
5589573 |
gaacttagagtgagtacaaaaactccattatttccttaaacataattcatttttcttaagtatagtataatcgttttaaataaaggtctgcgactacgat |
5589474 |
T |
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| Q |
215 |
ttgatacgtgacatcatgannnnnnnatatctctattactgcaagtcacgattgaagctgtatcaattgtgttt |
288 |
Q |
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| T |
5589473 |
ttgatacgtgacatcatgatttttttatgtctatatgactgtaacgcacgattgaggctgtatcaatcgtgttt |
5589400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 5065668 - 5065580
Alignment:
| Q |
28 |
attacacttatgtattctggttatgaaactgtttcaaccacatcaatgatggctgtgaagtacctccatgaccatcccaaagctcttga |
116 |
Q |
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| T |
5065668 |
attacaattatgtattctggttatgaaactatttcaactacatcaatgatggctgtaaagtacctgcatgatcatcctaaagttcttga |
5065580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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