View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_25 (Length: 297)
Name: NF9501_low_25
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 47585125 - 47584847
Alignment:
| Q |
1 |
ttcacccatgtcttaacgaggaaagaattgactgacagtgattccgttggttgaattaccaatattgtccaattccttgttggaggtcgcgttttcttca |
100 |
Q |
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| T |
47585125 |
ttcacccatgtcttaacgaggaaagaattgactgacagtgattccgttggttgaattaccgatattgtccaattccttgttggaggtcgcgttttcttca |
47585026 |
T |
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| Q |
101 |
tttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattgaagggctgttgaggtagaatgctattgttgccattgtaggtctgtcat |
200 |
Q |
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| T |
47585025 |
tttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattgaagggctgttgaggtagaatgctattgttgccattgtaggtctgtcat |
47584926 |
T |
|
| Q |
201 |
ctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttcttcatgggaataagttccttccatgct |
279 |
Q |
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| T |
47584925 |
ctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttcttcatgtgaataagttccttccatgct |
47584847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 95 - 273
Target Start/End: Complemental strand, 47575343 - 47575165
Alignment:
| Q |
95 |
tcttcatttcctctacgctgaaaatatggtggttcaagaggggatggcaggttgattgaagggctgttgaggtagaatgctattgttgccattgtaggtc |
194 |
Q |
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| T |
47575343 |
tcttcagttccattacgcttaaaatatggtggttcaagaggggatggcaagttggttgaagaactgttgaggtagaatgcaactgttgccattgtaggcc |
47575244 |
T |
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| Q |
195 |
tgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttcttcatgggaataagttccttc |
273 |
Q |
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| T |
47575243 |
tgtcttctggattttcctgaacacataacaaaccaatgtggatgtagttgatgacttcttcatgggaataagttccttc |
47575165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 47594028 - 47593976
Alignment:
| Q |
179 |
gttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaat |
231 |
Q |
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| T |
47594028 |
gttgccattgtaggtcttacatttggattttcttgaacacataacaaaccaat |
47593976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 252
Target Start/End: Complemental strand, 47619914 - 47619840
Alignment:
| Q |
178 |
tgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
252 |
Q |
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| T |
47619914 |
tgttgccattgtaggtctagcatttggattttcttggacacataataaaccaatttgaatgcattttataacttc |
47619840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 238
Target Start/End: Complemental strand, 47637170 - 47637110
Alignment:
| Q |
178 |
tgttgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatg |
238 |
Q |
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| T |
47637170 |
tgttgccattgtaggtctatcttctggatcttcttggacacatagtaaaccaatatggatg |
47637110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 469430 - 469479
Alignment:
| Q |
181 |
tgccattgtaggtctgtcatctggattttcttgaacacataacaaaccaa |
230 |
Q |
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| T |
469430 |
tgccattgtaggtctatcatcaggattttcttgaacacataataaaccaa |
469479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 453488 - 453557
Alignment:
| Q |
183 |
ccattgtaggtctgtcatctggattttcttgaacacataacaaaccaatgtggatgtatttgatgacttc |
252 |
Q |
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| T |
453488 |
ccattgttggtctatcatctggattttgttgcacacataataaaccaatttgaatgcatcttatgacttc |
453557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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