View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_27 (Length: 295)

Name: NF9501_low_27
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_27
NF9501_low_27
[»] chr5 (16 HSPs)
chr5 (6-197)||(40008736-40008940)
chr5 (6-119)||(3458097-3458212)
chr5 (6-141)||(19399616-19399751)
chr5 (130-198)||(4845324-4845392)
chr5 (126-183)||(1975285-1975342)
chr5 (130-197)||(5504760-5504827)
chr5 (130-195)||(6702396-6702461)
chr5 (130-195)||(30491782-30491847)
chr5 (130-197)||(33144171-33144238)
chr5 (126-192)||(19399519-19399585)
chr5 (126-183)||(3458052-3458109)
chr5 (128-195)||(38739413-38739480)
chr5 (144-198)||(30489746-30489800)
chr5 (143-192)||(19401999-19402048)
chr5 (145-198)||(40017354-40017407)
chr5 (143-183)||(6706035-6706075)
[»] chr4 (23 HSPs)
chr4 (6-194)||(33164353-33164556)
chr4 (6-119)||(36217985-36218098)
chr4 (12-124)||(46817318-46817432)
chr4 (6-137)||(55312204-55312343)
chr4 (94-192)||(36172194-36172292)
chr4 (126-198)||(28798128-28798200)
chr4 (143-198)||(46817432-46817487)
chr4 (47-119)||(12572691-12572763)
chr4 (126-197)||(42099509-42099580)
chr4 (126-183)||(53267784-53267841)
chr4 (126-198)||(12572802-12572874)
chr4 (130-198)||(24972413-24972481)
chr4 (130-198)||(40450954-40451022)
chr4 (147-197)||(28796644-28796694)
chr4 (130-192)||(36217899-36217961)
chr4 (221-275)||(46817473-46817527)
chr4 (127-193)||(51718202-51718268)
chr4 (6-47)||(36172321-36172362)
chr4 (148-197)||(55523749-55523798)
chr4 (84-116)||(28798073-28798105)
chr4 (130-194)||(34235691-34235755)
chr4 (130-198)||(36498929-36498997)
chr4 (143-195)||(53265818-53265870)
[»] chr8 (5 HSPs)
chr8 (6-163)||(43640834-43640993)
chr8 (13-139)||(28706962-28707090)
chr8 (12-198)||(33800352-33800553)
chr8 (130-194)||(9384643-9384707)
chr8 (149-193)||(35841425-35841469)
[»] chr3 (22 HSPs)
chr3 (12-139)||(44836315-44836442)
chr3 (18-198)||(53827523-53827716)
chr3 (6-116)||(47064982-47065092)
chr3 (102-196)||(42381640-42381734)
chr3 (107-198)||(42994859-42994950)
chr3 (128-194)||(6162667-6162733)
chr3 (106-198)||(16931469-16931561)
chr3 (6-62)||(42950864-42950922)
chr3 (130-198)||(19866756-19866824)
chr3 (130-198)||(34086827-34086895)
chr3 (126-194)||(44836461-44836529)
chr3 (130-197)||(15041993-15042060)
chr3 (143-198)||(35485266-35485321)
chr3 (142-195)||(19872140-19872193)
chr3 (143-183)||(2325561-2325601)
chr3 (130-198)||(7666949-7667017)
chr3 (144-195)||(15040707-15040758)
chr3 (145-198)||(16967985-16968038)
chr3 (143-192)||(42947404-42947453)
chr3 (130-198)||(3860826-3860893)
chr3 (127-183)||(35995175-35995231)
chr3 (126-194)||(42950971-42951039)
[»] chr7 (14 HSPs)
chr7 (6-183)||(48221562-48221738)
chr7 (6-116)||(30359822-30359932)
chr7 (6-116)||(26604023-26604133)
chr7 (6-138)||(20379472-20379612)
chr7 (126-192)||(38792031-38792097)
chr7 (130-194)||(26604160-26604224)
chr7 (130-197)||(44552689-44552756)
chr7 (112-197)||(31823613-31823698)
chr7 (145-198)||(48211803-48211856)
chr7 (126-194)||(20379651-20379719)
chr7 (143-198)||(1537246-1537301)
chr7 (55-122)||(2355584-2355650)
chr7 (29-67)||(1536278-1536318)
chr7 (143-195)||(5172-5224)
[»] chr6 (6 HSPs)
chr6 (12-119)||(35060781-35060890)
chr6 (126-196)||(14154560-14154630)
chr6 (128-183)||(35060880-35060935)
chr6 (143-198)||(14830415-14830470)
chr6 (148-193)||(14430972-14431017)
chr6 (137-194)||(17436063-17436120)
[»] chr2 (14 HSPs)
chr2 (6-141)||(42119288-42119425)
chr2 (12-141)||(30760285-30760414)
chr2 (6-183)||(12969116-12969304)
chr2 (88-193)||(18387269-18387374)
chr2 (6-116)||(22492564-22492676)
chr2 (6-116)||(37892858-37892968)
chr2 (126-183)||(42119195-42119252)
chr2 (126-197)||(30760178-30760249)
chr2 (143-198)||(22496076-22496131)
chr2 (130-197)||(11573657-11573724)
chr2 (126-183)||(22492484-22492541)
chr2 (142-195)||(8273271-8273324)
chr2 (130-195)||(31133205-31133270)
chr2 (143-195)||(11712984-11713036)
[»] chr1 (15 HSPs)
chr1 (6-141)||(47488831-47488974)
chr1 (6-116)||(45688445-45688555)
chr1 (6-196)||(50069074-50069287)
chr1 (12-116)||(11821280-11821380)
chr1 (143-195)||(39650222-39650274)
chr1 (126-198)||(47489010-47489082)
chr1 (143-195)||(28446530-28446582)
chr1 (130-198)||(33403113-33403181)
chr1 (143-194)||(35563532-35563583)
chr1 (130-197)||(35577511-35577578)
chr1 (12-107)||(17696335-17696431)
chr1 (130-194)||(28442949-28443013)
chr1 (143-195)||(33617670-33617722)
chr1 (143-195)||(35563386-35563438)
chr1 (130-198)||(48025579-48025647)
[»] scaffold1763 (1 HSPs)
scaffold1763 (6-119)||(197-310)
[»] scaffold0041 (1 HSPs)
scaffold0041 (130-198)||(24352-24420)
[»] scaffold1063 (1 HSPs)
scaffold1063 (128-194)||(1502-1568)


Alignment Details
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 40008940 - 40008736
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  ||||    
T  40008940 tttggagttggataatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaatgaggttttgcctgggctaataacagcaagtagc 40008841  T
Q  106 gtgacttaagtcac-------------acagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    ||||||||||| ||              |||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| ||||||||    
T  40008840 gtgacttaagttacgttccttttataaccagcgcaacttaagtcacgctacgcatgttaacatgcgcaggggcattttagacatttactttgagaatgag 40008741  T
Q  193 cgata 197  Q
    |||||    
T  40008740 cgata 40008736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 3458212 - 3458097
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgt--tgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||| ||| ||||| |||||||||||||||||| |||||    
T  3458212 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaagtgatgcataatgaggttctgcctgggctaataacaggacata 3458113  T
Q  104 gcgtgacttaagtcac 119  Q
    |||  |||||||||||    
T  3458112 gcgcaacttaagtcac 3458097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 19399751 - 19399616
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||| | ||| |  || ||||||| ||| ||| ||||    
T  19399751 tttggagttgggtaatttgagagaaaaatgagatttgtgtgtgtgttgtttgaaaatgaggcagaatcaagttctctctaggctaattacatcacgtagc 19399652  T
Q  106 gtgacttaagtcacacagcacaacttaagtcacgct 141  Q
    || |||||||||||  |||  |||||||||||||||    
T  19399651 gtaacttaagtcacgtagcggaacttaagtcacgct 19399616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 4845392 - 4845324
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||| |||||||||||||| |||  |||||||||||||||||||| |||||||||||||    
T  4845392 ttaagtcacgctacacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcgatac 4845324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 1975285 - 1975342
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||||||||||||||||||| | || |||||| ||||||||||||    
T  1975285 caacttaagtcacgctacgcatgttaacatgcgcatgggcattttggacatttacttt 1975342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 5504827 - 5504760
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| |||||||||||| |||||||||||||| | |||||| ||| ||||||||| ||||||||||||    
T  5504827 ttaactcacgctacgcaagttaacatgcgtagaggcattttcgacttttactttaggaatgagcgata 5504760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 6702461 - 6702396
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||| |||||||||||| ||||||||||||| || |||||| ||| |||||||| |||||||||||    
T  6702461 ttaactcacgctacgcaagttaacatgcgtatgggcatttttgacttttactttgagaatgagcga 6702396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 195
Target Start/End: Original strand, 30491782 - 30491847
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||| |||| ||||||| ||||||||||||||||||||||| ||| ||||||||  ||||||||||    
T  30491782 ttaactcacactacgcaagttaacatgcgtagggacattttcgacttttactttgggaatgagcga 30491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 33144171 - 33144238
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| |||| ||||||| |||||||||||||||| |||||  | ||||||||||| ||||||||||||    
T  33144171 ttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatttactttaggaatgagcgata 33144238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 126 - 192
Target Start/End: Complemental strand, 19399585 - 19399519
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    |||||||||||||||||| |||||||||||| ||| | |||||||  || ||||||||| |||||||    
T  19399585 caacttaagtcacgctacacatgttaacatgtgtatgtacattttgaacttttactttaggaatgag 19399519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 3458109 - 3458052
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||||||||||||||||| | | ||  ||||| ||||||||||||    
T  3458109 caacttaagtcacgctacgcatgttaacatgtgcatgggtattttggacatttacttt 3458052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 195
Target Start/End: Complemental strand, 38739480 - 38739413
Alignment:
Q  128 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||  ||||||| |||| ||||||||| |||||  |||||||||||| | |||||||||    
T  38739480 acttaagtcacgtaacgcatgctaacttgcgtaggggcatttgtgacatttactttgacaatgagcga 38739413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 30489800 - 30489746
Alignment:
Q  144 gcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||||||||| |||||| ||| ||||||||  |||||| ||||||    
T  30489800 gcatgttaacatgcgtaggggcattttcgacttttactttgggaatgaacgatac 30489746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 19401999 - 19402048
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    |||||||||||||||||| || |||||| ||| |||||||| ||||||||    
T  19401999 cgcatgttaacatgcgtatgggcattttggacttttactttgagaatgag 19402048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 40017354 - 40017407
Alignment:
Q  145 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    ||||||||| |||||| |||||||||||||||||| |||  ||||||| |||||    
T  40017354 catgttaacctgcgtaaggacattttagacatttattttgggaatgagtgatac 40017407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 6706035 - 6706075
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||||||| ||||| || ||||||||||    
T  6706035 cgcatgttaacatgcgtaggggcatttcagtcatttacttt 6706075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 6 - 194
Target Start/End: Original strand, 33164353 - 33164556
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||  ||    
T  33164353 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgcctgggctaataacagcatgta 33164452  T
Q  104 gcgtgacttaagtcac------------ac-agcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatg 190  Q
    | ||||||||||| ||            || |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||    
T  33164453 gtgtgacttaagttacgtttctcttataactagcacaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgagaatg 33164552  T
Q  191 agcg 194  Q
    ||||    
T  33164553 agcg 33164556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 36218098 - 36217985
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || |||||||||| ||||||| ||||    
T  36218098 tttggagtttggtattttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgaggcagaatgaggttctgtctgggctaatcacagcacgtagc 36217999  T
Q  106 gtgacttaagtcac 119  Q
    ||||||||||||||    
T  36217998 gtgacttaagtcac 36217985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 12 - 124
Target Start/End: Original strand, 46817318 - 46817432
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtga 109  Q
    ||||| |||||| || |||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||| ||||||||||||  ||||||||    
T  46817318 gttggataattttagtgaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcagaatgaggttttgcctggactaataacagcatgtagcgtga 46817417  T
Q  110 cttaagtcacacagc 124  Q
    |||||||||| ||||    
T  46817418 cttaagtcacgcagc 46817432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 6 - 137
Target Start/End: Complemental strand, 55312343 - 55312204
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgt--------tgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacag 97  Q
    ||||| ||||||||||||||||||||||||||||||||||||||        ||||||||||||| || ||  || ||||| || || ||||||||||||    
T  55312343 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgtgtgtgttgtgtttgaaaataatacatgatgaggttctgtctcggctaataacag 55312244  T
Q  98 cacatagcgtgacttaagtcacacagcacaacttaagtca 137  Q
    ||| ||| |||||| |||||||  ||| ||||||||||||    
T  55312243 cacgtagtgtgactcaagtcacgtagcgcaacttaagtca 55312204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 94 - 192
Target Start/End: Complemental strand, 36172292 - 36172194
Alignment:
Q  94 acagcacatagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    ||||||| ||||||||||||||||||  ||||||||||||||||| | |||||||||||||| | |||||  ||||| ||| ||||||||  |||||||    
T  36172292 acagcacgtagcgtgacttaagtcacgtagcacaacttaagtcacaccacgcatgttaacatacataggggtattttggacttttactttgggaatgag 36172194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 28798128 - 28798200
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    ||||||||||||| |||| |||||||||||| | |||| |||||| |||||||||||| ||||||||||||||    
T  28798128 caacttaagtcacactacacatgttaacatgtgcaggggcattttggacatttactttgagaatgagcgatac 28798200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 46817432 - 46817487
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    ||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||    
T  46817432 cgcatgttaacatgcgtaggggcattttgaacatttactttaagaatgagcgatac 46817487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 119
Target Start/End: Original strand, 12572691 - 12572763
Alignment:
Q  47 tgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcac 119  Q
    ||||||||||||||||||||||  || ||||| ||||||||||||||| ||||  |||| |||||||||||||    
T  12572691 tgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataatagcatgtagcatgacttaagtcac 12572763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 126 - 197
Target Start/End: Original strand, 42099509 - 42099580
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    ||||||||||||||||||||||||||||||||| |||   ||||| ||||||||||||   |||||||||||    
T  42099509 caacttaagtcacgctacgcatgttaacatgcgcaggtgtattttggacatttactttggaaatgagcgata 42099580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 183
Target Start/End: Original strand, 53267784 - 53267841
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||||| ||||||||||||||||||||| | |  |||||||||||    
T  53267784 caacttaagtcacgctacgtatgttaacatgcgtagggacaatatgaacatttacttt 53267841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 12572802 - 12572874
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| ||||||||| || |||| |||||||||| |||| |||||| |||||||||||| ||||||| ||||||    
T  12572802 caacataagtcacgatatgcatattaacatgcgcaggggcattttggacatttactttgagaatgaacgatac 12572874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 24972481 - 24972413
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| ||||||||||||||||   |||| ||| ||||||||| |||||||||||||    
T  24972481 ttaactcacgctacgcaagttaacatgcgtaggggtgtttttgacttttactttaggaatgagcgatac 24972413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 40451022 - 40450954
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| ||| ||||| || |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  40451022 ttaactcaagctacacaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatac 40450954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 147 - 197
Target Start/End: Complemental strand, 28796694 - 28796644
Alignment:
Q  147 tgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||||||||||  | ||||||||| |||||||||||| |||||||||||||    
T  28796694 tgttaacatgcacatggacattttggacatttactttgagaatgagcgata 28796644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 36217961 - 36217899
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    |||| |||||||||| | |||||||||||||||| |||||| ||| ||||||||  |||||||    
T  36217961 ttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 221 - 275
Target Start/End: Original strand, 46817473 - 46817527
Alignment:
Q  221 aagaaagagcgatactgtttagataatgaatataattcatatgaatattcataaa 275  Q
    ||||| ||||||||||||| || ||||||  | ||||||||||||||||||||||    
T  46817473 aagaatgagcgatactgttcaggtaatgagcagaattcatatgaatattcataaa 46817527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 193
Target Start/End: Complemental strand, 51718268 - 51718202
Alignment:
Q  127 aacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagc 193  Q
    ||||||||||||||||| ||||||||  || |||||| |||||| ||| ||||||||  ||||||||    
T  51718268 aacttaagtcacgctacacatgttaagttgtgtaggggcattttcgacttttactttgggaatgagc 51718202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 47
Target Start/End: Complemental strand, 36172362 - 36172321
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgt 47  Q
    ||||| |||||||||||| |||||||| ||||||||||||||    
T  36172362 tttggagttgggtaatttaagagaaaaatgagatttgtgtgt 36172321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 148 - 197
Target Start/End: Complemental strand, 55523798 - 55523749
Alignment:
Q  148 gttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||||||||||||||| |||||| ||| |||||||| | |||||||||||    
T  55523798 gttaacatgcgtaggggcattttcgacttttactttgaaaatgagcgata 55523749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 28798073 - 28798105
Alignment:
Q  84 tgggctaataacagcacatagcgtgacttaagt 116  Q
    ||||||||||||||||| |||||||||||||||    
T  28798073 tgggctaataacagcacgtagcgtgacttaagt 28798105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 34235691 - 34235755
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    ||||||||| | | ||||||||||||||||| || |||||  | ||||||||||| |||||||||    
T  34235691 ttaagtcacacaatgcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcg 34235755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 36498997 - 36498929
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||| ||| |||||||||| ||||| ||||||  || ||||||||  |||||||||||||    
T  36498997 ttaactcacgctatgcaagttaacatgcataggggcattttcaacttttactttgggaatgagcgatac 36498929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 53265870 - 53265818
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||||||||||  |||||| ||  ||||||||| ||||||||||    
T  53265870 cgcatgttaacatgcgtaggagcattttggaattttactttaggaatgagcga 53265818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 1e-47; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 6 - 163
Target Start/End: Original strand, 43640834 - 43640993
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||| |||||||  |||| ||||||||||||| | |||| |||    
T  43640834 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgaggcagaatgtggttctgcctgggctaattatagcatata 43640933  T
Q  104 gcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtaggg 163  Q
    ||||||||||||||||  ||| |||||||||||||||||| || ||||||||||||||||    
T  43640934 gcgtgacttaagtcacgtagcgcaacttaagtcacgctacacaagttaacatgcgtaggg 43640993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 28706962 - 28707090
Alignment:
Q  13 ttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgac 110  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||| ||||| |||||| | |||||||||||| |||||||||    
T  28706962 ttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcataatgaggttctgcctgagttaataacagcacgtagcgtgac 28707061  T
Q  111 ttaagtcacacagcacaacttaagtcacg 139  Q
    |||||||||  ||| ||||||||||||||    
T  28707062 ttaagtcacgtagcgcaacttaagtcacg 28707090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 12 - 198
Target Start/End: Original strand, 33800352 - 33800553
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtga 109  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| || |||  ||||||||||||| |||| |||    
T  33800352 gttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcagaatgaggttatgtctgacctaataacagcacgtagcatga 33800451  T
Q  110 cttaagtcac------------ac-agcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 196  Q
    |||||||  |            || ||  ||||||||||||||||||||||||||||||||| | || |||||||||||||||||||| |||||||||||    
T  33800452 cttaagttgcgttcctcttataactagtgcaacttaagtcacgctacgcatgttaacatgcgcaagggcattttagacatttactttaggaatgagcgat 33800551  T
Q  197 ac 198  Q
    ||    
T  33800552 ac 33800553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 9384707 - 9384643
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||| ||||||||||||||||||  |||||||||||||||| |||||||| ||| | ||||||||    
T  9384707 ttaactcacgctacgcatgttaagttgcgtagggacattttggacatttattttgaaaatgagcg 9384643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 193
Target Start/End: Complemental strand, 35841469 - 35841425
Alignment:
Q  149 ttaacatgcgtagggacattttagacatttactttaagaatgagc 193  Q
    |||||||||||||||| ||||| |||||||||||||| |||||||    
T  35841469 ttaacatgcgtagggatattttggacatttactttaaaaatgagc 35841425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 12 - 139
Target Start/End: Original strand, 44836315 - 44836442
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgact 111  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| ||||| ||||||| ||||| |||||||  |||||||||    
T  44836315 gttgggtaatttgagagaaaattaagatttgtgtgtgttgtgtttgaaaatgaggcagaatgaggttctgcctggactaattacagcacgcagcgtgact 44836414  T
Q  112 taagtcacacagcacaacttaagtcacg 139  Q
    |||||||| |||| ||||||||||||||    
T  44836415 taagtcacgcagcgcaacttaagtcacg 44836442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 53827523 - 53827716
Alignment:
Q  18 taatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagt- 116  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||  || ||||| ||||||| ||||||||||||| |||||||||||||||     
T  53827523 taatttgagagaaaattgagatctgtgtgtgttgtgtttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagtt 53827622  T
Q  117 ------cac-----ac-agcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
          | |     || ||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||  |||||||||||||    
T  53827623 gtgttcctcttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatac 53827716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 47065092 - 47064982
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||| |||||| |||||||||||||||||||||||||  ||||||||||||| ||||||| ||||| ||||||||||||| ||| ||| ||||    
T  47065092 tttggagttggataatttaagagaaaattgagatttgtgtgtgtgttgtttgaaaatgaggcagaatgaggttctgcctgggctaattacaacacgtagc 47064993  T
Q  106 gtgacttaagt 116  Q
    |||||||||||    
T  47064992 gtgacttaagt 47064982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 102 - 196
Target Start/End: Complemental strand, 42381734 - 42381640
Alignment:
Q  102 tagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 196  Q
    |||| |||||||| ||||  ||| ||||||||||||||||||||||||||||||||||| || |||||| ||||||||||||   ||||||||||    
T  42381734 tagcatgacttaaatcacgtagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcgat 42381640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 42994859 - 42994950
Alignment:
Q  107 tgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||  | | ||||||||||||||||| ||||||||||||||  | || |||||||||||||||||||  |||||||||||||    
T  42994859 tgacttaagtcacgtatcgcaacttaagtcacgctatgcatgttaacatgcccatgggcattttagacatttactttgggaatgagcgatac 42994950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 6162667 - 6162733
Alignment:
Q  128 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||  |||||||||    
T  6162667 acttaagtcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcg 6162733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 106 - 198
Target Start/End: Complemental strand, 16931561 - 16931469
Alignment:
Q  106 gtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    ||||||||||||||  ||| |||||||| ||||| |||||||||||||||||| || || || || ||||||||||||| ||| |||||||||    
T  16931561 gtgacttaagtcacgtagcgcaacttaaatcacggtacgcatgttaacatgcgcagagatatattggacatttactttaggaacgagcgatac 16931469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 6 - 62
Target Start/End: Original strand, 42950864 - 42950922
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatt--tgtgtgtgttgtgtttgaaaat 62  Q
    ||||| |||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  42950864 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaat 42950922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 19866824 - 19866756
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  19866824 ttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttttactttgggaatgagcgatac 19866756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 34086827 - 34086895
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  |||||||||||||    
T  34086827 ttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatac 34086895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 44836461 - 44836529
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||||||||||||||||| ||||||||||||||||||| || | | |||||||||||||  ||||||||    
T  44836461 caacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatttactttagaaatgagcg 44836529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 15041993 - 15042060
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| |||||||||||| |||||||||||||||| |||||| ||| ||||||||  ||||||||||||    
T  15041993 ttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgata 15042060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 35485321 - 35485266
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||| | |||| ||||||| ||||||||||||||||||||||||||    
T  35485321 cgcatgttaacatgtgcaggggcattttaaacatttactttaagaatgagcgatac 35485266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 19872140 - 19872193
Alignment:
Q  142 acgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||||||||||||||||||| | |||||||| |||||| |||| ||||||||||    
T  19872140 acgcatgttaacatgcgtagaggcattttagtcatttattttaggaatgagcga 19872193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 183
Target Start/End: Original strand, 2325561 - 2325601
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||||||||||||||| || ||||||||    
T  2325561 cgcatgttaacatgcgtagggacattttaaacttttacttt 2325601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 7666949 - 7667017
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||| ||| |||||||||||||||| |||||| ||| |||| |||  |||||||||||||    
T  7666949 ttaactcacgctatgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatac 7667017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 15040758 - 15040707
Alignment:
Q  144 gcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||||||||||||||||||| ||||| || ||||||||||  ||||||||||    
T  15040758 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcga 15040707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 145 - 198
Target Start/End: Original strand, 16967985 - 16968038
Alignment:
Q  145 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    ||||||||||| |||||||  |||||||||||||| |||| ||||||| |||||    
T  16967985 catgttaacatacgtaggggtattttagacatttattttaggaatgagtgatac 16968038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 192
Target Start/End: Complemental strand, 42947453 - 42947404
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    ||||||||||||||||||||  |||||| ||| |||||||| ||||||||    
T  42947453 cgcatgttaacatgcgtaggagcattttggacttttactttgagaatgag 42947404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 3860826 - 3860893
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| |||||||| ||||||| | ||||  || |||||||| ||||||||||||||    
T  3860826 ttaactcacgctacgcaagttaacatacgtaggg-cgttttcaacttttactttgagaatgagcgatac 3860893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 35995231 - 35995175
Alignment:
Q  127 aacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||| |||||  ||||||||||||||||| |||| ||||||| || ||||||||    
T  35995231 aacttaactcacgtgacgcatgttaacatgcgaaggggcattttaaacttttacttt 35995175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 42950971 - 42951039
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||||||| ||||||||| ||||||||||| |||| || || | | ||||||||||||  |||||||||    
T  42950971 caacttaaatcacgctacacatgttaacatacgtatgggcaatatggacatttactttgggaatgagcg 42951039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 48221562 - 48221738
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgt--gtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| ||||||||||||||||||||| ||| ||||||  ||||||  ||||||||||||| ||||||   |||| || ||||| |||| ||||||| ||    
T  48221562 tttggagttgggtaatttgagagaaaaatgaaatttgtatgtgtgtgttgtttgaaaatgaggcagaa---ggttctggctgggttaattacagcacgta 48221658  T
Q  104 gcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||||||||  ||| |||||||||||||||||| ||||||| |||||||||||  ||||| ||||||||||||    
T  48221659 gcgtgacttaagtcacgtagcgcaacttaagtcacgctacacatgttagcatgcgtaggggtattttggacatttacttt 48221738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 30359932 - 30359822
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||| ||||| ||| || |||||| ||||||  ||||    
T  30359932 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtttgaaaatgaggcagaatgaggttctgcttgagctaattacagcatgtagc 30359833  T
Q  106 gtgacttaagt 116  Q
    |||||||||||    
T  30359832 gtgacttaagt 30359822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 26604023 - 26604133
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| |||| |||||||||||||||||||| ||||||||||||  ||||||||||||| ||||||  ||||| || |||||||||| ||||||| ||||    
T  26604023 tttggagttgagtaatttgagagaaaattgatatttgtgtgtgtgttgtttgaaaatgaggcagaacgaggttatgtctgggctaattacagcacgtagc 26604122  T
Q  106 gtgacttaagt 116  Q
    |||||||||||    
T  26604123 gtgacttaagt 26604133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 6 - 138
Target Start/End: Original strand, 20379472 - 20379612
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgt--------gtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacag 97  Q
    ||||| ||||||||||||||||||||| ||||||||||||        ||||  ||||||||||||| ||||||| ||||| ||  | ||||||| ||||    
T  20379472 tttggagttgggtaatttgagagaaaaatgagatttgtgtttgtgtgcgtgtgttgtttgaaaatgaggcagaatgaggttctgtttaggctaattacag 20379571  T
Q  98 cacatagcgtgacttaagtcacacagcacaacttaagtcac 138  Q
    ||| ||||||||||||||||||   || |||||||||||||    
T  20379572 cacgtagcgtgacttaagtcacgtggcgcaacttaagtcac 20379612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 192
Target Start/End: Original strand, 38792031 - 38792097
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgag 192  Q
    |||||||||||||||||||||||||| || | ||||||  ||||||||| |||||||| ||||||||    
T  38792031 caacttaagtcacgctacgcatgttatcaagtgtaggggtattttagacttttactttgagaatgag 38792097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 26604160 - 26604224
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||| |||||||||| | |||||||||||||||| ||||||| || |||||||| ||||||||||    
T  26604160 ttaactcacgctacgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcg 26604224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 44552689 - 44552756
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| ||||| |||||| |||||||||||||||  |||||| ||| |||||||| |||||||||||||    
T  44552689 ttaactcacgttacgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgata 44552756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 112 - 197
Target Start/End: Complemental strand, 31823698 - 31823613
Alignment:
Q  112 taagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    ||||||||  ||| |||||||||| |||| ||||||||||||||| | |||| |||||| || ||||| |||  ||||||||||||    
T  31823698 taagtcacgtagcgcaacttaagttacgcaacgcatgttaacatgtgcaggggcattttggatatttattttgggaatgagcgata 31823613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 145 - 198
Target Start/End: Complemental strand, 48211856 - 48211803
Alignment:
Q  145 catgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||| | |||||||||| | |||||||||| |||||||||||||    
T  48211856 catgttaacatgcgcatggacattttaaaaatttactttaggaatgagcgatac 48211803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 20379651 - 20379719
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    ||||||||||||||||| |||| ||||  ||||||||| |||||| ||| ||||||||  |||||||||    
T  20379651 caacttaagtcacgctatgcatattaagttgcgtaggggcattttggacttttactttgggaatgagcg 20379719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 1537246 - 1537301
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||||| |||| ||||||  ||||||||||| ||||||| ||||||    
T  1537246 cgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatac 1537301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 2355650 - 2355584
Alignment:
Q  55 ttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgacttaagtcacaca 122  Q
    ||||| |||| ||||||| ||||| ||||||| |||| | |||||| |||||||||||||||||||||    
T  2355650 ttgaagatgaggcagaatgaggttctgcctgg-ctaagagcagcacgtagcgtgacttaagtcacaca 2355584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 1536318 - 1536278
Alignment:
Q  29 aaaattgagatttgtgtgt--gttgtgtttgaaaatgatgc 67  Q
    |||||||||||||||||||  ||||||||||||||||||||    
T  1536318 aaaattgagatttgtgtgtaagttgtgtttgaaaatgatgc 1536278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 5172 - 5224
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||||||||||| |||||  | ||||||||||  ||||||||||    
T  5172 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcga 5224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 79; Significance: 6e-37; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 35060781 - 35060890
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtg--tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtga 109  Q
    |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||  ||||||||    
T  35060781 gttgggtaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgcttgggctaataacagcatgtagcgtga 35060880  T
Q  110 cttaagtcac 119  Q
    ||||||||||    
T  35060881 cttaagtcac 35060890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 14154560 - 14154630
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgat 196  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| |||||||| |||| |||||||||||    
T  14154560 caacttaagtcacgctacacatgttaacatgcgcagggacattttggacatttattttaggaatgagcgat 14154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 128 - 183
Target Start/End: Original strand, 35060880 - 35060935
Alignment:
Q  128 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    |||||||||||||||||||||||||||||||||||| |||||| ||||||||||||    
T  35060880 acttaagtcacgctacgcatgttaacatgcgtaggggcattttggacatttacttt 35060935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Complemental strand, 14830470 - 14830415
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||| ||||||||||||| ||||||||||||  |||||||||||||    
T  14830470 cgcatgttaacatgtgtagggacattttggacatttactttgggaatgagcgatac 14830415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 14431017 - 14430972
Alignment:
Q  148 gttaacatgcgtagggacattttagacatttactttaagaatgagc 193  Q
    |||||||||||||||||||||||| ||||||||||||  |||||||    
T  14431017 gttaacatgcgtagggacattttaaacatttactttagaaatgagc 14430972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 17436120 - 17436063
Alignment:
Q  137 acgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||||||||| |||||||||||||| | |||||||||| ||||||||  |||||||||    
T  17436120 acgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcg 17436063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 6e-37; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 6 - 141
Target Start/End: Complemental strand, 42119425 - 42119288
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgt--tgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| |||||  |||||||||||||||||||||||||||||||  |||||||||||||||||||  || ||||| ||||||||||||||||| ||| ||    
T  42119425 tttggagttggaaaatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataacaacacgta 42119326  T
Q  104 gcgtgacttaagtcacacagcacaacttaagtcacgct 141  Q
    ||||||||||||||||  ||| ||||||||||||||||    
T  42119325 gcgtgacttaagtcacgtagcgcaacttaagtcacgct 42119288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 12 - 141
Target Start/End: Complemental strand, 30760414 - 30760285
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgact 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||| || || || |||||||||||||| ||| |||| ||| |    
T  30760414 gttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttaaaaatgatgtataatgagattctgtctgggctaataacaacacgtagcatgagt 30760315  T
Q  112 taagtcacacagcacaacttaagtcacgct 141  Q
    ||||||||  ||||||||||||||||||||    
T  30760314 taagtcacgtagcacaacttaagtcacgct 30760285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 6 - 183
Target Start/End: Original strand, 12969116 - 12969304
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||| ||||||||||||||||| |||||||||||||||||||  |||||||||| ||||||| ||| | ||||||||||||| ||||||| ||||    
T  12969116 tttggagttaggtaatttgagagaaaaatgagatttgtgtgtgttgt--ttgaaaatgaggcagaatgaggctctgcctgggctaattacagcacgtagc 12969213  T
Q  106 gtgacttaagtcac------------ac-agcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    ||||||||||| ||            || ||| |||||||||||||||||||||||||||||||||||||| ||||||  || ||||||||    
T  12969214 gtgacttaagttacgtttatcttataactagcgcaacttaagtcacgctacgcatgttaacatgcgtaggggcattttgaacttttacttt 12969304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 88 - 193
Target Start/End: Complemental strand, 18387374 - 18387269
Alignment:
Q  88 ctaataacagcacatagcgtgacttaagtcacacagcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaaga 187  Q
    ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| || |||||| || |||||||||  ||    
T  18387374 ctaataacagcacgtagcgtgacttaagtcacatagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcatttttgatatttactttggga 18387275  T
Q  188 atgagc 193  Q
    ||||||    
T  18387274 atgagc 18387269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 22492676 - 22492564
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgt--tgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacata 103  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||||   || ||||| || |||||||||||||||||| ||    
T  22492676 tttggagttggataatttgagagaaaattgagatttgtgtgtgtgttgtgtttgaaaatgatgcttgatgaggttctgtctgggctaataacagcacgta 22492577  T
Q  104 gcgtgacttaagt 116  Q
     ||||||||||||    
T  22492576 acgtgacttaagt 22492564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 37892858 - 37892968
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||| |||||| ||||||||||||||||| |||||||  | ||||| ||||| ||| ||| ||||| || |||||||||| ||||||| |||     
T  37892858 tttggagttggctaattttagagaaaattgagatttatgtgtgtgttatttgagaatgaggcacaatgaggttctgtctgggctaattacagcacgtagt 37892957  T
Q  106 gtgacttaagt 116  Q
    |||||||||||    
T  37892958 gtgacttaagt 37892968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 42119252 - 42119195
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    |||||||||||||||||| ||||||||||||||||||| |||||| ||||||||||||    
T  42119252 caacttaagtcacgctacacatgttaacatgcgtaggggcattttggacatttacttt 42119195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 197
Target Start/End: Complemental strand, 30760249 - 30760178
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||||||||| ||||||| ||| |||||||||| |||||||||||||||||||||||||  |||||| ||||    
T  30760249 caacttaagttacgctacacatattaacatgcgcagggacattttagacatttactttagaaatgagtgata 30760178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 198
Target Start/End: Original strand, 22496076 - 22496131
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||||||| || ||||||||||||||||||| | ||||||||||||    
T  22496076 cgcatgttaacatgcgtaagggcattttagacatttactttgaaaatgagcgatac 22496131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 11573724 - 11573657
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| |||||||||||| |||||||| ||||||| |||||| ||| ||||||||  ||||||||||||    
T  11573724 ttaactcacgctacgcaagttaacatacgtaggggcatttttgacttttactttgggaatgagcgata 11573657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 22492541 - 22492484
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttacttt 183  Q
    |||||||||||||||||| |||||||| ||||| |||| ||||||  |||||||||||    
T  22492541 caacttaagtcacgctacacatgttaatatgcgcaggggcattttgaacatttacttt 22492484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 8273324 - 8273271
Alignment:
Q  142 acgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||||||||||||||||||||| |||||  | ||||||||||  ||||||||||    
T  8273324 acgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcga 8273271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 195
Target Start/End: Complemental strand, 31133270 - 31133205
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||   ||||||||||| || |||||| |||||  |||||||||||||| |||||||||    
T  31133270 ttaagtcacgtagcgcatgttaacttgtgtaggggcatttatgacatttactttaaaaatgagcga 31133205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 11713036 - 11712984
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||| ||||||| |||||| ||| ||||||||  ||||||||||    
T  11713036 cgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcga 11712984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 47488831 - 47488974
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtg------tgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggc--taataacag 97  Q
    ||||| |||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||| ||||| || ||||||  |||||||||    
T  47488831 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgtgtgttgtgtttgaaaatgatgcagaatgaggttctgactgggctataataacag 47488930  T
Q  98 cacatagcgtgacttaagtcacacagcacaacttaagtcacgct 141  Q
    ||| ||||||||||||||||||  ||  ||||||||| ||||||    
T  47488931 cacgtagcgtgacttaagtcacgtagagcaacttaagccacgct 47488974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 6 - 116
Target Start/End: Complemental strand, 45688555 - 45688445
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||  ||||||||||||| ||||||| ||||| |   ||||||||| ||||||||||||    
T  45688555 tttggagttggataatttgagagaaaaatgagatttgtgtgtgtgttgtttgaaaatgaggcagaatgaggttctatttgggctaattacagcacatagc 45688456  T
Q  106 gtgacttaagt 116  Q
    |||||||||||    
T  45688455 gtgacttaagt 45688445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 50069074 - 50069287
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgt----------tgtgtttgaaaatgatgcagaataaggttttgcctgggctaataac 95  Q
    ||||| ||||||||||||||||||||||||||||||||||||||          |||||||||||||||||||  || ||||| ||||||||||||||||    
T  50069074 tttggagttgggtaatttgagagaaaattgagatttgtgtgtgtgtgtgtgtgttgtgtttgaaaatgatgcatgatgaggttctgcctgggctaataac 50069173  T
Q  96 agcacatagcgtgacttaagtcac------------ac-agcacaacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactt 182  Q
    | |||||||||||||||||||  |            || ||  |||||||| |||||||||| ||||||||||||| |||| |||||| |||||||||||    
T  50069174 aacacatagcgtgacttaagttgcgttccgcttataactagtgcaacttaactcacgctacgtatgttaacatgcgcaggggcattttggacatttactt 50069273  T
Q  183 taagaatgagcgat 196  Q
    |  |||||||||||    
T  50069274 tgggaatgagcgat 50069287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 11821380 - 11821280
Alignment:
Q  12 gttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgtgact 111  Q
    |||||||||||||||||||||||||||||| |||||||  ||||||||||||||||||||| |||||    |||||||||| || |||| ||||||||||    
T  11821380 gttgggtaatttgagagaaaattgagatttatgtgtgtgttgtttgaaaatgatgcagaatgaggtt----ctgggctaattactgcacgtagcgtgact 11821285  T
Q  112 taagt 116  Q
    |||||    
T  11821284 taagt 11821280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 39650274 - 39650222
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||||||||||| |||||| ||||||||||||| ||||||||||    
T  39650274 cgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcga 39650222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Original strand, 47489010 - 47489082
Alignment:
Q  126 caacttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||||||||||||| |||||||||||||||| | | |  ||||||||||||||| ||||| ||||||||||||    
T  47489010 caacttaagtcacgttacgcatgttaacatgtgcaagagcattttagacatttattttaaaaatgagcgatac 47489082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 28446530 - 28446582
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||||||||||| ||||| || ||||||||||  ||||||||||    
T  28446530 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcga 28446582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 33403113 - 33403181
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| ||||| |||||| |||||||||||||||| |||||| ||| ||||||||   ||||||||||||    
T  33403113 ttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttactttggaaatgagcgatac 33403181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 35563583 - 35563532
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    ||||||||||||||||||||| ||||| || ||||||||||  |||||||||    
T  35563583 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 197
Target Start/End: Original strand, 35577511 - 35577578
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgata 197  Q
    |||| |||||||||||| ||||||||  |||||| |||||| ||| ||||||||  ||||||||||||    
T  35577511 ttaactcacgctacgcaagttaacatatgtaggggcattttcgacttttactttgggaatgagcgata 35577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 17696431 - 17696335
Alignment:
Q  12 gttgggtaatttgagagaaaattgagattt---gtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagcgt 107  Q
    ||||| |||||||||| | |||||||||||   |||| ||||||  |||||||||| ||||||| ||| | |||||||  |||||||||||| ||||||    
T  17696431 gttggataatttgagaaagaattgagattttaagtgtatgttgt--ttgaaaatgaggcagaatgaggctctgcctggaataataacagcacgtagcgt 17696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 28443013 - 28442949
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||| ||||||||| || |||||||||||||||| ||||||  || ||||||||  |||||||||    
T  28443013 ttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcg 28442949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 33617722 - 33617670
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    ||||||||||||||| ||||| |||||  | |||||||||| |||||||||||    
T  33617722 cgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcga 33617670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 35563438 - 35563386
Alignment:
Q  143 cgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcga 195  Q
    |||||||||||||||| |||| ||||| || ||||||||||  ||||||||||    
T  35563438 cgcatgttaacatgcgcaggggcatttcagtcatttactttgggaatgagcga 35563386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 48025647 - 48025579
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| ||||||||||||| || ||||||  || | ||||||  |||||||||||||    
T  48025647 ttaactcacgctacgcaagttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatac 48025579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 197 - 310
Alignment:
Q  6 tttggtgttgggtaatttgagagaaaattgagatttgtgtgtgttgtgtttgaaaatgatgcagaataaggttttgcctgggctaataacagcacatagc 105  Q
    ||||| ||||| |||||||||||||||||||||| ||||||| |  ||||||||||||| |||| || ||||| | | |||||||| ||||||||  |||    
T  197 tttggagttggataatttgagagaaaattgagatgtgtgtgtctgttgtttgaaaatgaggcaggatgaggttcttcttgggctaagaacagcacggagc 296  T
Q  106 gtgacttaagtcac 119  Q
    ||||||||||||||    
T  297 gtgacttaagtcac 310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 130 - 198
Target Start/End: Original strand, 24352 - 24420
Alignment:
Q  130 ttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcgatac 198  Q
    |||| |||||||||||| |||||||||||||||| ||||||| || ||||||||  |||||||||||||    
T  24352 ttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgagcgatac 24420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Complemental strand, 1568 - 1502
Alignment:
Q  128 acttaagtcacgctacgcatgttaacatgcgtagggacattttagacatttactttaagaatgagcg 194  Q
    |||||| |||||  ||||||||||||||||| |||| |||||| ||| |||||||||| ||||||||    
T  1568 acttaactcacgtaacgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcg 1502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University