View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_30 (Length: 275)

Name: NF9501_low_30
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_30
NF9501_low_30
[»] chr3 (7 HSPs)
chr3 (17-207)||(13290666-13290859)
chr3 (79-268)||(13164881-13165072)
chr3 (17-82)||(13165220-13165285)
chr3 (17-82)||(13348323-13348388)
chr3 (79-138)||(13175282-13175341)
chr3 (146-187)||(1502590-1502631)
chr3 (140-185)||(44427859-44427904)
[»] scaffold0002 (3 HSPs)
scaffold0002 (79-268)||(141916-142107)
scaffold0002 (17-82)||(141703-141768)
scaffold0002 (79-138)||(131647-131706)
[»] chr7 (5 HSPs)
chr7 (146-197)||(37775988-37776039)
chr7 (150-197)||(650525-650572)
chr7 (152-194)||(10893877-10893919)
chr7 (151-196)||(43160491-43160536)
chr7 (148-196)||(37610053-37610101)
[»] chr8 (4 HSPs)
chr8 (146-196)||(32691750-32691800)
chr8 (141-195)||(31681827-31681881)
chr8 (148-195)||(2447228-2447273)
chr8 (140-188)||(14732899-14732947)
[»] chr4 (5 HSPs)
chr4 (147-198)||(4790700-4790751)
chr4 (148-195)||(25400849-25400896)
chr4 (150-196)||(45615421-45615467)
chr4 (140-185)||(22799889-22799934)
chr4 (140-185)||(18513237-18513282)
[»] chr6 (6 HSPs)
chr6 (140-185)||(9024172-9024217)
chr6 (140-197)||(30600554-30600611)
chr6 (140-185)||(19369835-19369880)
chr6 (141-181)||(602664-602704)
chr6 (143-195)||(7112786-7112838)
chr6 (143-195)||(8781307-8781359)
[»] chr1 (5 HSPs)
chr1 (140-185)||(20628956-20629001)
chr1 (138-183)||(26390127-26390172)
chr1 (144-185)||(31667443-31667484)
chr1 (144-188)||(15792989-15793033)
chr1 (141-185)||(40176621-40176665)
[»] chr2 (4 HSPs)
chr2 (146-188)||(16630810-16630852)
chr2 (146-188)||(18622430-18622472)
chr2 (144-185)||(18570990-18571031)
chr2 (140-180)||(21371795-21371835)
[»] chr5 (1 HSPs)
chr5 (140-185)||(41558650-41558695)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 17 - 207
Target Start/End: Complemental strand, 13290859 - 13290666
Alignment:
Q  17 acaatgtagatgtgacaagcctaactctttagtccctttaatatgagctacaaagactaaaatgaatttctatgtactgttttattataatttgtaaact 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13290859 acaatgtagatgtgacaagcctaactctttagtccctttaatatgagctacaaagactaaaatgaatttctatgtactgttttattataatttgtaaact 13290760  T
Q  117 aaagact-tttaagctttgtag--cggacacgacactgacacatgtgattacttttaattatgtcattttcttaagttactacttactactgat 207  Q
    |||| || ||||||||||||||  | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13290759 aaagtctatttaagctttgtagcaccgacacgacactgacacatgtgattacttttaattatgtcattttcttaagttactacttactactgat 13290666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 79 - 268
Target Start/End: Complemental strand, 13165072 - 13164881
Alignment:
Q  79 tgaatttctatgtactgttttattataatttgtaaactaaagacttttaagctttgtagcg--gacacgacactgacacatgtgattacttttaattatg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  13165072 tgaatttctatgtactgttttattataatttctaaactaaagtcttttaagctttgtagcaccgacacgacactgacacatgtgattacttttaattatg 13164973  T
Q  177 tcattttcttaagttactacttactactgatgttgacgtgtccgtatttgtataaagtcattttcttttcataatttttaagttctctgctt 268  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  13164972 tcattttcttaagttaccacttactactgatgttgacgtgtccgtatttgtataaagtcattttcttttcgtaatttttaagttctatgctt 13164881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13165285 - 13165220
Alignment:
Q  17 acaatgtagatgtgacaagcctaactctttagtccctttaatatgagctacaaagactaaaatgaa 82  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  13165285 acaatgtagatgtgacaagcctaacactttagtccctccaatatgagctacaaagactaaaatgaa 13165220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 13348388 - 13348323
Alignment:
Q  17 acaatgtagatgtgacaagcctaactctttagtccctttaatatgagctacaaagactaaaatgaa 82  Q
    |||| ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  13348388 acaaagtagatgtgacaagcctaactctttagtccctccaatatgagctacaaagactaaaatgaa 13348323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 138
Target Start/End: Complemental strand, 13175341 - 13175282
Alignment:
Q  79 tgaatttctatgtactgttttattataatttgtaaactaaagacttttaagctttgtagc 138  Q
    |||||||||| |||||| |||||| ||||||||| | ||| |||||||||||| ||||||    
T  13175341 tgaatttctacgtactgctttattgtaatttgtacattaaggacttttaagctctgtagc 13175282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 187
Target Start/End: Complemental strand, 1502631 - 1502590
Alignment:
Q  146 acactgacacatgtgattacttttaattatgtcattttctta 187  Q
    |||| ||||||||||||||| || ||||||||||||||||||    
T  1502631 acacagacacatgtgattacattcaattatgtcattttctta 1502590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 44427904 - 44427859
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||| ||||||||||||||| ||  |||||||||||||||    
T  44427904 gacacgacaccgacacatgtgattacattggattatgtcattttct 44427859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 157; Significance: 2e-83; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 79 - 268
Target Start/End: Original strand, 141916 - 142107
Alignment:
Q  79 tgaatttctatgtactgttttattataatttgtaaactaaagacttttaagctttgtagcg--gacacgacactgacacatgtgattacttttaattatg 176  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||||||||    
T  141916 tgaatttctatgtactgttttattataatttctaaactaaagtcttttaagctttgtagcaccgacacgacactgacacatgtgattacttttaattatg 142015  T
Q  177 tcattttcttaagttactacttactactgatgttgacgtgtccgtatttgtataaagtcattttcttttcataatttttaagttctctgctt 268  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  142016 tcattttcttaagttaccacttactactgatgttgacgtgtccgtatttgtataaagtcattttcttttcgtaatttttaagttctatgctt 142107  T

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Target: scaffold0002; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 82
Target Start/End: Original strand, 141703 - 141768
Alignment:
Q  17 acaatgtagatgtgacaagcctaactctttagtccctttaatatgagctacaaagactaaaatgaa 82  Q
    ||||||||||||||||||||||||| |||||||||||  |||||||||||||||||||||||||||    
T  141703 acaatgtagatgtgacaagcctaacactttagtccctccaatatgagctacaaagactaaaatgaa 141768  T

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Target: scaffold0002; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 131647 - 131706
Alignment:
Q  79 tgaatttctatgtactgttttattataatttgtaaactaaagacttttaagctttgtagc 138  Q
    |||||||||| |||||| |||||| ||||||||| | ||| |||||||||||| ||||||    
T  131647 tgaatttctacgtactgctttattgtaatttgtacattaaggacttttaagctctgtagc 131706  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 37776039 - 37775988
Alignment:
Q  146 acactgacacatgtgattacttttaattatgtcattttcttaagttactact 197  Q
    |||||||||||||||||||| ||||||||||||||||||| || ||||||||    
T  37776039 acactgacacatgtgattacatttaattatgtcattttctcaaattactact 37775988  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 197
Target Start/End: Complemental strand, 650572 - 650525
Alignment:
Q  150 tgacacatgtgattacttttaattatgtcattttcttaagttactact 197  Q
    |||||||||||||| | || ||||||||||||||||||| ||||||||    
T  650572 tgacacatgtgattgcattcaattatgtcattttcttaaattactact 650525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 194
Target Start/End: Original strand, 10893877 - 10893919
Alignment:
Q  152 acacatgtgattacttttaattatgtcattttcttaagttact 194  Q
    |||||||||||||| || ||||||||||||||||||| |||||    
T  10893877 acacatgtgattacattcaattatgtcattttcttaaattact 10893919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 43160536 - 43160491
Alignment:
Q  151 gacacatgtgattacttttaattatgtcattttcttaagttactac 196  Q
    ||||||||||||||| || |||||||| |||||||||| |||||||    
T  43160536 gacacatgtgattacattcaattatgttattttcttaaattactac 43160491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 37610053 - 37610101
Alignment:
Q  148 actgacacatgtgattacttttaattatgtcattttcttaagttactac 196  Q
    |||||||||||||||||| || | ||||||||||||| || ||||||||    
T  37610053 actgacacatgtgattacattcagttatgtcattttcatatgttactac 37610101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 196
Target Start/End: Complemental strand, 32691800 - 32691750
Alignment:
Q  146 acactgacacatgtgattacttttaattatgtcattttcttaagttactac 196  Q
    |||||||||||||||||||| || ||||||||||||||||||| |||||||    
T  32691800 acactgacacatgtgattacattcaattatgtcattttcttaaattactac 32691750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 195
Target Start/End: Original strand, 31681827 - 31681881
Alignment:
Q  141 acacgacactgacacatgtgattacttttaattatgtcattttcttaagttacta 195  Q
    ||||||||| ||||||||||||| | || ||||||||||||||||||| ||||||    
T  31681827 acacgacaccgacacatgtgatttcattcaattatgtcattttcttaaattacta 31681881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 148 - 195
Target Start/End: Original strand, 2447228 - 2447273
Alignment:
Q  148 actgacacatgtgattacttttaattatgtcattttcttaagttacta 195  Q
    |||||||||||||||||| ||||||  |||||||||||||| ||||||    
T  2447228 actgacacatgtgattacatttaat--tgtcattttcttaaattacta 2447273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 14732947 - 14732899
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttcttaa 188  Q
    ||||||||||| |||||||| ||||| ||||||||  ||||||||||||    
T  14732947 gacacgacactaacacatgttattacatttaattaattcattttcttaa 14732899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 4790751 - 4790700
Alignment:
Q  147 cactgacacatgtgattacttttaattatgtcattttcttaagttactactt 198  Q
    |||||||||||| |||||  |||| |||||||||||||||||||||||||||    
T  4790751 cactgacacatgcgattatatttagttatgtcattttcttaagttactactt 4790700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 148 - 195
Target Start/End: Complemental strand, 25400896 - 25400849
Alignment:
Q  148 actgacacatgtgattacttttaattatgtcattttcttaagttacta 195  Q
    ||||||||||||||| || |||||||||||||||||||||| ||||||    
T  25400896 actgacacatgtgataacatttaattatgtcattttcttaaattacta 25400849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 196
Target Start/End: Original strand, 45615421 - 45615467
Alignment:
Q  150 tgacacatgtgattacttttaattatgtcattttcttaagttactac 196  Q
    |||||||||||||||| || ||||||||||||||||||| |||||||    
T  45615421 tgacacatgtgattacgttcaattatgtcattttcttaaattactac 45615467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 22799889 - 22799934
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||||||||| ||||||||| || ||||||||||||||||    
T  22799889 gacacgacactgacacgtgtgattacattgaattatgtcattttct 22799934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 18513237 - 18513282
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    ||||| |||||||||||| ||||||| || ||||||||||||||||    
T  18513237 gacacaacactgacacatatgattacattgaattatgtcattttct 18513282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 9024172 - 9024217
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||||||||||| ||||||| || ||||||||||||||||    
T  9024172 gacacgacactgacacatatgattacattgaattatgtcattttct 9024217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 30600611 - 30600554
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttcttaagttactact 197  Q
    |||| ||||||||||||| ||||||| ||  |||||||||||||||||| ||||||||    
T  30600611 gacatgacactgacacatatgattacgttctattatgtcattttcttaaattactact 30600554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 19369880 - 19369835
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||| ||||| ||||||||| || ||||||||||||||||    
T  19369880 gacacgacaccgacacttgtgattacattgaattatgtcattttct 19369835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 181
Target Start/End: Complemental strand, 602704 - 602664
Alignment:
Q  141 acacgacactgacacatgtgattacttttaattatgtcatt 181  Q
    ||||||||||||||||||||||||  || ||||||||||||    
T  602704 acacgacactgacacatgtgattatattgaattatgtcatt 602664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 7112838 - 7112786
Alignment:
Q  143 acgacactgacacatgtgattacttttaattatgtcattttcttaagttacta 195  Q
    ||||||||||||||| | ||||| ||||||||| ||||||||| || ||||||    
T  7112838 acgacactgacacatataattacatttaattatttcattttctcaaattacta 7112786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 143 - 195
Target Start/End: Original strand, 8781307 - 8781359
Alignment:
Q  143 acgacactgacacatgtgattacttttaattatgtcattttcttaagttacta 195  Q
    ||||||||||||||| | ||||| ||||||||| ||||||||| || ||||||    
T  8781307 acgacactgacacatataattacatttaattatttcattttctcaaattacta 8781359  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 185
Target Start/End: Complemental strand, 20629001 - 20628956
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||| || |||| |||||||||||||||||||||||||||    
T  20629001 gacacgacaccgatacatatgattacttttaattatgtcattttct 20628956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 138 - 183
Target Start/End: Original strand, 26390127 - 26390172
Alignment:
Q  138 cggacacgacactgacacatgtgattacttttaattatgtcatttt 183  Q
    |||||||||||||||||| ||||||||| || ||||||||||||||    
T  26390127 cggacacgacactgacacttgtgattacattcaattatgtcatttt 26390172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 31667484 - 31667443
Alignment:
Q  144 cgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||| ||||||||||||||| |||||||||||||||||||    
T  31667484 cgacaccgacacatgtgattacatttaattatgtcattttct 31667443  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 188
Target Start/End: Original strand, 15792989 - 15793033
Alignment:
Q  144 cgacactgacacatgtgattacttttaattatgtcattttcttaa 188  Q
    |||||||||||||||||||||| || |||| ||||||||| ||||    
T  15792989 cgacactgacacatgtgattacgttcaattgtgtcatttttttaa 15793033  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 141 - 185
Target Start/End: Complemental strand, 40176665 - 40176621
Alignment:
Q  141 acacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    ||||||||||||||||||||||||| || ||| | ||||||||||    
T  40176665 acacgacactgacacatgtgattacattgaatgaagtcattttct 40176621  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 16630852 - 16630810
Alignment:
Q  146 acactgacacatgtgattacttttaattatgtcattttcttaa 188  Q
    |||||||||||||||||||  || |||||||||||||||||||    
T  16630852 acactgacacatgtgattaaattgaattatgtcattttcttaa 16630810  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 18622472 - 18622430
Alignment:
Q  146 acactgacacatgtgattacttttaattatgtcattttcttaa 188  Q
    |||| ||||||||||||| | ||||||||||||||||||||||    
T  18622472 acaccgacacatgtgattgcatttaattatgtcattttcttaa 18622430  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 144 - 185
Target Start/End: Complemental strand, 18571031 - 18570990
Alignment:
Q  144 cgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||||||| ||||||| || ||||||||||||||||    
T  18571031 cgacactgacacatatgattacattgaattatgtcattttct 18570990  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 21371835 - 21371795
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcat 180  Q
    ||||||||||  |||||||||||||| ||||||||||||||    
T  21371835 gacacgacacaaacacatgtgattacatttaattatgtcat 21371795  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 140 - 185
Target Start/End: Original strand, 41558650 - 41558695
Alignment:
Q  140 gacacgacactgacacatgtgattacttttaattatgtcattttct 185  Q
    |||||||||||||||||| | ||||| || ||||||||||||||||    
T  41558650 gacacgacactgacacatttaattacattgaattatgtcattttct 41558695  T

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