View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_31 (Length: 250)
Name: NF9501_low_31
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_31 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 7019283 - 7019036
Alignment:
| Q |
5 |
agtttggagttagttcaattggctatctaaaccttaatgtactatttgttgtaacaattctctcata--atcaatattgttttaatttcactagtcctac |
102 |
Q |
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| T |
7019283 |
agttcggagttagttcaattggctatctaaaccttaatgtactatttgttgtaacaattctctcatataatcaatattattttaatttcacttgtcctat |
7019184 |
T |
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| Q |
103 |
aattttctcccgtttgagttataccaagaactgaaataaagacgtcgatcgaaggagagcttgagcattggtagctcatcaccgcatcagcacaaggacg |
202 |
Q |
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| T |
7019183 |
aattttctcccgtttgagttataccaagaactgaaataaagacgtcggtcgaaggagagcttgagcattggtagctcatcaccgcatcagcacaaggacg |
7019084 |
T |
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| Q |
203 |
tggtcgaaggagagcttgagtcttggtcactcatcaccatgttagcac |
250 |
Q |
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| T |
7019083 |
tggtcgaaggagagcttgagtcttggtcactcatcaccatgttagcac |
7019036 |
T |
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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 12 - 85
Target Start/End: Complemental strand, 26925891 - 26925818
Alignment:
| Q |
12 |
agttagttcaattggctatctaaaccttaatgtactatttgttgtaacaattctctcataatcaatattgtttt |
85 |
Q |
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| T |
26925891 |
agttggtttaattggctatataagccttaatgtactagttaatgtaacaattctctcataatcaatattatttt |
26925818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 42395697 - 42395649
Alignment:
| Q |
38 |
ttaatgtactatttgttgtaacaattctctcataatcaatattgtttta |
86 |
Q |
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| T |
42395697 |
ttaatgtactacttgatgtaacaattctctaataatcaatattttttta |
42395649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 20199457 - 20199413
Alignment:
| Q |
41 |
atgtactatttgttgtaacaattctctcataatcaatattgtttt |
85 |
Q |
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| T |
20199457 |
atgtactatttgatgtaacaactctctcataatgaatattatttt |
20199413 |
T |
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