View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_34 (Length: 241)
Name: NF9501_low_34
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_34 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 164; Significance: 9e-88; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 33 - 241
Target Start/End: Original strand, 42466594 - 42466797
Alignment:
| Q |
33 |
gtcttaaattaaattaactcatagcactccctccttattaactaatttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaaca |
132 |
Q |
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| T |
42466594 |
gtcttaaattaaattaactcatcacactccctccttattaactaatttgtctaattaccttctcataatgctcaccctgcccatcctaaatttaaaaaca |
42466693 |
T |
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| Q |
133 |
agggaaagaagaaacacatgctatgggtaaattttacctttcctttgatgtgcacgcacataaggataaaatattgagtgaaaatggtctggagagctat |
232 |
Q |
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| T |
42466694 |
agggaaagaagaaacacatgctatgggtaaattttacctttcctttgatgt----gcacatcaggat-aaatattgagttaaaatggtctggagagctat |
42466788 |
T |
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| Q |
233 |
gggtcgatt |
241 |
Q |
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| T |
42466789 |
gggtcgatt |
42466797 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 41955111 - 41955040
Alignment:
| Q |
77 |
atttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaacaagggaaagaagaaacac |
149 |
Q |
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| T |
41955111 |
atttgtctaatttccttttcagaatgctcctcctccccatcctaa-tttaaaaaccagggaaagaagaaacac |
41955040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 1215304 - 1215233
Alignment:
| Q |
77 |
atttgtctaattaccttctcataatgctcaccctgtccatcctaaatttaaaaacaagggaaagaagaaacac |
149 |
Q |
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| T |
1215304 |
atttgtctaatttccttttcagaatgctcctcctccccatcctaa-tttaataaccagggaaagaagaaacac |
1215233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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