View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_36 (Length: 230)
Name: NF9501_low_36
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_36 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 208; Significance: 1e-114; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 3 - 230
Target Start/End: Complemental strand, 47585461 - 47585234
Alignment:
| Q |
3 |
ggtaatttctcaatcaactctaatgattacagcaattgtcttgtttggttttgctgatcatacttttacgccccacaactgtttgataaaatgtctctgt |
102 |
Q |
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| T |
47585461 |
ggtaatttctcaatcaactctaatgattacagcaattgtcttgtttggttttgctgatcatacttttacgtcccacaagtgtttgataaaatatctctgt |
47585362 |
T |
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| Q |
103 |
aaaataggcacacagattttgcttaatgagttaatgccttttctttttctatttccaaagttcttaatacatggtacatttccatagattccaggaatag |
202 |
Q |
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| T |
47585361 |
aaaataggcacacagattttgcttaatgagttaatgccttttctttttctatttccaaagttcttaattcatggtacatttccatagattccaggaatag |
47585262 |
T |
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| Q |
203 |
aattgtcaattacttttattcaaatata |
230 |
Q |
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| T |
47585261 |
aattgtcaattacttttattccaatata |
47585234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 47575749 - 47575587
Alignment:
| Q |
25 |
atgattacagcaattgtcttgtttggttttgctgatcatacttttacgccccacaactgtttgataaaatgtctctgtaaaataggcacacagattttgc |
124 |
Q |
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||||| ||| ||||| ||||||||| |||||||||||||||||| || | | |||||||||||||||| ||||||| |||||| ||||||| ||||||| |
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| T |
47575749 |
atgatcacaacaattctcttgtttgattttgctgatcatacttt-acacactacaactgtttgataaattgtctctcaaaaatatgcacacacattttgc |
47575651 |
T |
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| Q |
125 |
ttaatgagttaatgccttttctttttctatttccaaagttcttaatacatggtacatttccata |
188 |
Q |
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| T |
47575650 |
ttaatgaattaatgcctttactttttctatttacaaagttctaagtgtatggtacatttccata |
47575587 |
T |
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