View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9501_low_39 (Length: 227)
Name: NF9501_low_39
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_39 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 168; Significance: 3e-90; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 206
Target Start/End: Original strand, 4923901 - 4924092
Alignment:
| Q |
15 |
agagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaa |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4923901 |
agaggttcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaa |
4924000 |
T |
|
| Q |
115 |
tatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagatcgtgggg |
206 |
Q |
| |
|
|| | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4924001 |
tagtggagaaccaaatgaaagaccaacaatgggtgaggttgaggttgaacttgagcatgctttggcactgcaggaggaagcagatcgtgggg |
4924092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 35 - 205
Target Start/End: Complemental strand, 4903320 - 4903153
Alignment:
| Q |
35 |
attattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaatatagaagaaccaaatgaaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4903320 |
attattgatcccattctcatgagattaatagcgccgcaatgtttggcagtgttcatggatatcatgaaaagatgcttgaatat---agaaccaaatgaaa |
4903224 |
T |
|
| Q |
135 |
gaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagatcgtggg |
205 |
Q |
| |
|
||||| | ||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||| |
|
|
| T |
4903223 |
gaccagctatgggtgaggttgaggtcgaacttgagcatgctctagcactgcaggaggaagcagattgtggg |
4903153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 15 - 203
Target Start/End: Original strand, 4929236 - 4929424
Alignment:
| Q |
15 |
agagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaa |
114 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| ||||||| ||||||||| | ||| |||||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
4929236 |
agaggttcccagctgatgaaattattgatccaattctcacgagattgatttcaccggaatgtttggcagtgttcgtcaatatcatgaaaagatgcttgaa |
4929335 |
T |
|
| Q |
115 |
tatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagatcgtg |
203 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
4929336 |
tagagaagaaccaaatgaaagaccttcaatgggtgaggttgaggttgaacttgagcatgctctagcactgcaggaggaagcagagcgtg |
4929424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 15 - 204
Target Start/End: Complemental strand, 4906717 - 4906531
Alignment:
| Q |
15 |
agagattcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaa |
114 |
Q |
| |
|
|||| ||||||||| | || ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||||||| |
|
|
| T |
4906717 |
agaggttcccagctaatgagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaa |
4906618 |
T |
|
| Q |
115 |
tatagaagaaccaaatgaaagaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagatcgtgg |
204 |
Q |
| |
|
||| ||||||||||||||||||| | ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
4906617 |
tat---agaaccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtgg |
4906531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 35 - 199
Target Start/End: Original strand, 5822943 - 5823104
Alignment:
| Q |
35 |
attattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttgaatatagaagaaccaaatgaaa |
134 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||| ||||| ||| || ||||||||| ||||||||||||||| ||||| |||| |
|
|
| T |
5822943 |
attattgatcccattctcatgagattgattgcgccgtggtgtttgaaggtgttcatggatgtcatgaaaaaatgcttgaatatagac---ccaaacgaaa |
5823039 |
T |
|
| Q |
135 |
gaccaacaatgggcgaggttgaggttgaacttgagcatgctctggcactgcaggaggaagcagat |
199 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||| |
|
|
| T |
5823040 |
gaccagcaatgggcgaggttgaggttgaactcgagcatgctctagcactgcaggaggaaacagat |
5823104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University