View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9501_low_41 (Length: 205)

Name: NF9501_low_41
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9501_low_41
NF9501_low_41
[»] chr5 (10 HSPs)
chr5 (20-161)||(28375722-28375868)
chr5 (20-161)||(28366982-28367128)
chr5 (22-161)||(1536556-1536700)
chr5 (43-161)||(30963175-30963291)
chr5 (75-156)||(34647940-34648021)
chr5 (59-161)||(30927384-30927484)
chr5 (94-155)||(23775274-23775335)
chr5 (94-155)||(23862228-23862289)
chr5 (97-161)||(54438-54502)
chr5 (95-123)||(14664032-14664060)
[»] chr4 (6 HSPs)
chr4 (20-161)||(53982107-53982252)
chr4 (43-161)||(6156591-6156709)
chr4 (20-161)||(20192593-20192739)
chr4 (43-161)||(6162288-6162406)
chr4 (20-161)||(20197957-20198103)
chr4 (98-156)||(12733924-12733982)
[»] chr2 (18 HSPs)
chr2 (20-161)||(22430360-22430506)
chr2 (20-161)||(22435954-22436100)
chr2 (20-161)||(26694165-26694311)
chr2 (20-161)||(43777003-43777149)
chr2 (43-161)||(630771-630889)
chr2 (43-161)||(636322-636440)
chr2 (43-161)||(7909964-7910082)
chr2 (43-161)||(7917419-7917537)
chr2 (20-161)||(22424990-22425136)
chr2 (43-161)||(14898823-14898941)
chr2 (20-161)||(14893238-14893388)
chr2 (20-161)||(43771477-43771621)
chr2 (72-161)||(26702318-26702407)
chr2 (42-161)||(1519181-1519304)
chr2 (43-138)||(1525682-1525783)
chr2 (91-137)||(19052368-19052415)
chr2 (94-155)||(14188409-14188470)
chr2 (51-100)||(19052428-19052477)
[»] chr7 (13 HSPs)
chr7 (23-161)||(42167622-42167765)
chr7 (20-153)||(16648435-16648573)
chr7 (20-153)||(17622796-17622934)
chr7 (43-161)||(557873-557991)
chr7 (43-161)||(576056-576174)
chr7 (20-161)||(44655611-44655757)
chr7 (43-161)||(32148517-32148635)
chr7 (20-140)||(42208905-42209030)
chr7 (79-156)||(25499152-25499229)
chr7 (79-156)||(25493915-25493992)
chr7 (42-136)||(26456872-26456966)
chr7 (51-137)||(38011710-38011796)
chr7 (97-133)||(11726511-11726547)
[»] chr8 (5 HSPs)
chr8 (43-161)||(12756163-12756281)
chr8 (43-161)||(24052035-24052153)
chr8 (43-161)||(41043519-41043637)
chr8 (59-161)||(41048908-41049010)
chr8 (101-131)||(24042894-24042924)
[»] chr3 (18 HSPs)
chr3 (20-161)||(3110510-3110656)
chr3 (20-161)||(9730314-9730460)
chr3 (20-161)||(13990844-13990990)
chr3 (20-161)||(23338841-23338987)
chr3 (20-161)||(23344388-23344534)
chr3 (20-161)||(40800639-40800785)
chr3 (20-161)||(2168652-2168798)
chr3 (20-161)||(2174219-2174365)
chr3 (20-161)||(13985272-13985418)
chr3 (20-161)||(3112127-3112273)
chr3 (20-161)||(40802563-40802709)
chr3 (43-161)||(13980657-13980775)
chr3 (20-161)||(48216337-48216483)
chr3 (43-161)||(13991989-13992107)
chr3 (59-138)||(34578841-34578920)
chr3 (23-116)||(9724670-9724767)
chr3 (113-161)||(9721564-9721612)
chr3 (94-131)||(19307751-19307788)
[»] chr1 (14 HSPs)
chr1 (20-161)||(15716636-15716782)
chr1 (20-161)||(26711478-26711624)
chr1 (43-161)||(27178971-27179089)
chr1 (43-161)||(27194972-27195090)
chr1 (20-161)||(15711055-15711201)
chr1 (20-161)||(33498420-33498566)
chr1 (20-131)||(33492968-33493084)
chr1 (87-161)||(17721823-17721897)
chr1 (43-156)||(3343879-3343996)
chr1 (90-156)||(16498730-16498796)
chr1 (87-142)||(9088672-9088727)
chr1 (53-90)||(16498817-16498854)
chr1 (94-148)||(29644985-29645039)
chr1 (127-161)||(33491525-33491559)
[»] scaffold0004 (2 HSPs)
scaffold0004 (20-161)||(350993-351139)
scaffold0004 (20-161)||(345672-345818)
[»] chr6 (3 HSPs)
chr6 (20-161)||(14855949-14856095)
chr6 (49-161)||(26680617-26680728)
chr6 (43-161)||(14847119-14847237)
[»] scaffold0211 (1 HSPs)
scaffold0211 (20-161)||(26916-27062)
[»] scaffold0169 (2 HSPs)
scaffold0169 (43-137)||(10998-11092)
scaffold0169 (43-137)||(8736-8830)
[»] scaffold0121 (2 HSPs)
scaffold0121 (79-161)||(11427-11509)
scaffold0121 (43-100)||(11510-11567)
[»] scaffold0124 (2 HSPs)
scaffold0124 (79-161)||(39540-39622)
scaffold0124 (43-100)||(39482-39539)


Alignment Details
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 28375868 - 28375722
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  28375868 acaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 28375769  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28375768 tagagctcatatgtaacctaattatacatcacaagagaataatataa 28375722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 28367128 - 28366982
Alignment:
Q  20 acaagtgggtgtccatatagcaa-----ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| |||| |||||||||     ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  28367128 acaagtggatgtcaatatagcaattgagttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 28367029  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  28367028 tagagctcatatgtaacctaattatacatcacaagagaataatataa 28366982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 22 - 161
Target Start/End: Complemental strand, 1536700 - 1536556
Alignment:
Q  22 aagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaata 116  Q
    |||||| ||||||||||||||||     ||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||    
T  1536700 aagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaata 1536601  T
Q  117 gagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||| | ||  ||||||||||| ||||    
T  1536600 gagctcatatgtaacctaattagagataccaagagaataatataa 1536556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 30963291 - 30963175
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| ||||||||||    
T  30963291 ttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcata--taacttaattataca 30963194  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  30963193 tcacaagagaataatataa 30963175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 75 - 156
Target Start/End: Complemental strand, 34648021 - 34647940
Alignment:
Q  75 tattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataa 156  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||    
T  34648021 tattgtgcttgctccccaaatcattgtatttctgtataaattgagctcatatgtaacctaattgtacatcacaagagaataa 34647940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 59 - 161
Target Start/End: Complemental strand, 30927484 - 30927384
Alignment:
Q  59 ttagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataaca 158  Q
    |||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||  |||| |||||||||||||||| ||||||| |    
T  30927484 ttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcata--taacttaattatacatcacaaaagaataata 30927387  T
Q  159 taa 161  Q
    |||    
T  30927386 taa 30927384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 23775274 - 23775335
Alignment:
Q  94 atcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 155  Q
    ||||||||| |||||||||||||||| ||| ||||||  ||||| ||||||| |||||||||    
T  23775274 atcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaata 23775335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 23862228 - 23862289
Alignment:
Q  94 atcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 155  Q
    ||||||||| |||||||||||||||| ||| ||||||  ||||| ||||||| |||||||||    
T  23862228 atcattgtacttctctataaatagagatcacatgtaagataattgtacatcagaagagaata 23862289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 54502 - 54438
Alignment:
Q  97 attgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||| ||||||||||| ||| |||||||  |||| |||| |||||| |||||| ||||    
T  54502 attgtatttctatataaatagagttcacatgtaacacaattgtacaacacaagtgaataatataa 54438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Complemental strand, 14664060 - 14664032
Alignment:
Q  95 tcattgtatttctctataaatagagctca 123  Q
    |||||||||||||||||||||||||||||    
T  14664060 tcattgtatttctctataaatagagctca 14664032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 53982107 - 53982252
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||| ||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  53982107 acaagtggatgtccatatagcaattgggttatttgatcatactgttagcttattgggccttattgtgcttgctccc-aagtcattgtatttctctataaa 53982205  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  53982206 tagagctcatatgtaacctaattatacatcacaagagaataacataa 53982252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 6156591 - 6156709
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6156591 ttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 6156690  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  6156691 tcacaagagaataatataa 6156709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 20192739 - 20192593
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  20192739 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctcccaaagtcattgtatttctctataaa 20192640  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  20192639 tagagcttatatgtaacctaattatacatcacaagagaataatataa 20192593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 6162288 - 6162406
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||| |||||||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  6162288 ttattggatcatattgttagtttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 6162387  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  6162388 tcacaagagaataatataa 6162406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 20198103 - 20197957
Alignment:
Q  20 acaagtgggtgtccatatagcaa-----ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||| ||| ||||||||||||||     ||||||||||||| | |||| |||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  20198103 acaaatggatgtccatatagcaattgggttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgtatttctctataaa 20198004  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||    
T  20198003 tagagcttatatgtaacctaattatacatcacaagagaataatataa 20197957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 12733982 - 12733924
Alignment:
Q  98 ttgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataa 156  Q
    |||||||||||||||||||||||||| |||||||||||||    |||||||||||||||    
T  12733982 ttgtatttctctataaatagagctcacatgtaacctaattggttatcacaagagaataa 12733924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 2e-51; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 22430360 - 22430506
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22430360 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 22430459  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  22430460 tagagctcatatgtaacctaattatacatcacaagagaataatataa 22430506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 22435954 - 22436100
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22435954 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 22436053  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  22436054 tagagctcatatgtaacctaattatacatcacaagagaataatataa 22436100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 26694165 - 26694311
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||||| |||| ||||||  |||||||||||||||||||||| ||||||||||||||||||||    
T  26694165 acaagtggatgtccatatagcaattgggttattggatcatactgttagtttattgaaccttattgtgcttgctccccaagtcattgtatttctctataaa 26694264  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  26694265 tagagctcatatgtaacctaattatacatcacaagagaataacataa 26694311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 43777003 - 43777149
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  43777003 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 43777102  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  43777103 tagagctcatatgtaacctaattatacatcacaagagaataatataa 43777149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 630771 - 630889
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  630771 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 630870  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  630871 tcacaagagaataatataa 630889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 636322 - 636440
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  636322 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 636421  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  636422 tcacaagagaataatataa 636440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 7910082 - 7909964
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7910082 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 7909983  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  7909982 tcacaagagaataatataa 7909964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 7917537 - 7917419
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7917537 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 7917438  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  7917437 tcacaagagaataatataa 7917419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 22424990 - 22425136
Alignment:
Q  20 acaagtgggtgtccatatagcaa-----ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||     ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  22424990 acaagtggatgtccatatagcaaatgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 22425089  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||| ||||||||||||||||||||||| ||||    
T  22425090 tagagctcatatgtaacccaattatacatcacaagagaataatataa 22425136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 14898823 - 14898941
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14898823 ttattggatcatattgttagcttattggaccatattgtgcttgctccctaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 14898922  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  14898923 tcacaagagaataatataa 14898941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 14893238 - 14893388
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggcc----ttattgtgcttgctccccaaatcattgtatttctcta 110  Q
    |||||||| ||||||||||||||||     ||||||||||| | |||||||||||||||    |||||||||||||||||||| ||||||||||||||||    
T  14893238 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatatttattgtgcttgctccccaagtcattgtatttctcta 14893337  T
Q  111 taaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14893338 taaatagagctcatatgtaacctaattatacatcacaagagaataatataa 14893388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 43771477 - 43771621
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||| ||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  43771477 acaagtggatgtccatatagcaattgggttattagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 43771576  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||  ||||||||||||||||||||||||||||| ||||    
T  43771577 tagagctcata--taacctaattatacatcacaagagaataatataa 43771621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 72 - 161
Target Start/End: Original strand, 26702318 - 26702407
Alignment:
Q  72 ccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26702318 ccttattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 26702407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 161
Target Start/End: Original strand, 1519181 - 1519304
Alignment:
Q  42 attattggatcatactattagcttattgggccttattgtgcttgctccccaaatcat----tgtatttctctataaatagagctcatatgtaacctaatt 137  Q
    |||||||||| ||| | ||||||||||||| | ||||||||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||||    
T  1519181 attattggattatattgttagcttattgggtcatattgtgcttgctccccaagtcattcattgtatttctctataaatagagctcatatgtaacctaatt 1519280  T
Q  138 atacatcacaagagaataacataa 161  Q
    | | ||  ||||||||||| ||||    
T  1519281 agagataccaagagaataatataa 1519304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 43 - 138
Target Start/End: Original strand, 1525682 - 1525783
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctc------tataaatagagctcatatgtaacctaat 136  Q
    ||||||||||||||| |||||||||| || | ||||||||||||||||||| ||||||||||||||      ||||||||||||||||||||||||||||    
T  1525682 ttattggatcatactgttagcttattaggtcatattgtgcttgctccccaagtcattgtatttctctataaatataaatagagctcatatgtaacctaat 1525781  T
Q  137 ta 138  Q
    ||    
T  1525782 ta 1525783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 91 - 137
Target Start/End: Complemental strand, 19052415 - 19052368
Alignment:
Q  91 caaatcattgtatttctctataaatagagctcata-tgtaacctaatt 137  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19052415 caaatcattgtatttctctataaatagagctcatactataacctaatt 19052368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 14188409 - 14188470
Alignment:
Q  94 atcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaata 155  Q
    ||||||||| ||||||||||||||||  || ||||||| ||||| |||| ||||||||||||    
T  14188409 atcattgtacttctctataaatagagaccacatgtaacataattgtacaccacaagagaata 14188470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 19052477 - 19052428
Alignment:
Q  51 tcatactattagcttattgggccttattgtgcttgctccccaaatcattg 100  Q
    |||||||||||||||||||| |  ||||||||||||||||||| ||||||    
T  19052477 tcatactattagcttattggacgatattgtgcttgctccccaagtcattg 19052428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 100; Significance: 1e-49; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 23 - 161
Target Start/End: Complemental strand, 42167765 - 42167622
Alignment:
Q  23 agtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatag 117  Q
    ||||| ||||||||||||||||     ||| ||||||||| |||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42167765 agtggatgtccatatagcaattgagttatttgatcatactgttagtttattgggccttattgtgcttgctccccaagtcattgtatttctctataaatag 42167666  T
Q  118 agctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  42167665 agctcatatgtaacctaattatacatcacaagaaaataacataa 42167622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 16648435 - 16648573
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  16648435 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 16648534  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaa 153  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16648535 tagagctcatatgtaacctaattatacatcacaagagaa 16648573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 153
Target Start/End: Original strand, 17622796 - 17622934
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  17622796 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 17622895  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaa 153  Q
    |||||||||||||||||||||||||||||||||||||||    
T  17622896 tagagctcatatgtaacctaattatacatcacaagagaa 17622934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 557991 - 557873
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  557991 ttattgggtcatactattagcttattgggccatattgtgcttgcttcccaagtcattgtatttctctataaatagagttcatatgtaacctaattgtaca 557892  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  557891 tcacaagagaataatataa 557873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 576174 - 576056
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||| ||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  576174 ttattgggtcatactattagcttattgggccatattgtgattgcttcccaagtcattgtatttctctataaatagagttcatatgtaacctaattgtaca 576075  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  576074 tcacaagagaataatataa 576056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 44655611 - 44655757
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||||| ||||||||||||| ||| ||||||||||| ||||| || |||||||||||||||||    
T  44655611 acaagtggatgtccatatagcaattgggttattggatcatactgttagcttattgggtcttgttgtgcttgctacccaagtctttgtatttctctataaa 44655710  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |  ||||||||||||||||||||||||||||||||||||||| ||||    
T  44655711 ttaagctcatatgtaacctaattatacatcacaagagaataatataa 44655757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 32148517 - 32148635
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||| |||||||||| |||||||||||||||| || ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  32148517 ttattggatcatattgttagtttattgggccatattgtgcttgctcccaaagtcattgtatttctctataaatagagcttatatgtaacctaattataca 32148616  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||| ||||| ||||    
T  32148617 tcacaagaaaataatataa 32148635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 82; E-Value: 6e-39
Query Start/End: Original strand, 20 - 140
Target Start/End: Original strand, 42208905 - 42209030
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  42208905 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggaccatattgtgcttgctccccaagtcattgtatttctctataaa 42209004  T
Q  115 tagagctcatatgtaacctaattata 140  Q
    ||||||||||||||||||||||||||    
T  42209005 tagagctcatatgtaacctaattata 42209030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 25499152 - 25499229
Alignment:
Q  79 gtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataa 156  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25499152 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatgatacatcacaagagaataa 25499229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 79 - 156
Target Start/End: Original strand, 25493915 - 25493992
Alignment:
Q  79 gtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataa 156  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||    
T  25493915 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacataatgatacatcacaagagaataa 25493992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 42 - 136
Target Start/End: Complemental strand, 26456966 - 26456872
Alignment:
Q  42 attattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaat 136  Q
    |||||||| | ||||||||||||||||| ||  ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26456966 attattgggttatactattagcttattgtgctatattgcgcttgctctccaaatcattgtatttctctataaatagagctcatatgtaacttaat 26456872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 51 - 137
Target Start/End: Complemental strand, 38011796 - 38011710
Alignment:
Q  51 tcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaatt 137  Q
    ||||||| |||| ||||||||| ||||| | || | ||||||| |||||||||| ||||||  ||||||||||||||||||||||||    
T  38011796 tcatactcttagtttattgggctttattatactggatccccaagtcattgtattactctatctatagagctcatatgtaacctaatt 38011710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 97 - 133
Target Start/End: Complemental strand, 11726547 - 11726511
Alignment:
Q  97 attgtatttctctataaatagagctcatatgtaacct 133  Q
    ||||||||||||||||||||||||||| |||||||||    
T  11726547 attgtatttctctataaatagagctcacatgtaacct 11726511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 5e-49; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 12756281 - 12756163
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  12756281 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 12756182  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  12756181 tcacaagagaataatataa 12756163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 24052153 - 24052035
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||| |||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  24052153 ttattggatcatattgttagtttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 24052054  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  24052053 tcacaagagaataatataa 24052035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 41043519 - 41043637
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | |||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  41043519 ttattggatcatattgttagcttattgggctttattgtgcttactccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 41043618  T
Q  143 tcacaagagaataacataa 161  Q
    ||||||||||||| |||||    
T  41043619 tcacaagagaatagcataa 41043637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 161
Target Start/End: Original strand, 41048908 - 41049010
Alignment:
Q  59 ttagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataaca 158  Q
    ||||||||||||| |||||| || ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  41048908 ttagcttattgggtcttattatgtttgctccccaagtcattgtatttatttataaatagagctcatatgtaacctaattatacatcacaagataataaca 41049007  T
Q  159 taa 161  Q
    |||    
T  41049008 taa 41049010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 131
Target Start/End: Complemental strand, 24042924 - 24042894
Alignment:
Q  101 tatttctctataaatagagctcatatgtaac 131  Q
    |||||||||||||||||||||||||||||||    
T  24042924 tatttctctataaatagagctcatatgtaac 24042894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 99; Significance: 5e-49; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 3110656 - 3110510
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3110656 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 3110557  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  3110556 tagagctcatatgtaacttaattatacatcacaagagaataatataa 3110510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 9730460 - 9730314
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  9730460 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaaatcattgtatttctctataaa 9730361  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||| |||||||||||| |||||||||||| ||||    
T  9730360 tagagctcatatgtaatctaattatacatgacaagagaataatataa 9730314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 13990844 - 13990990
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  13990844 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtatttctctataaa 13990943  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  13990944 tagagctcatatgtaacctaattatacatcacaagagaataatataa 13990990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 23338841 - 23338987
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  23338841 acaagtggatgtccatatagcaattggattattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 23338940  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23338941 tagagctcatatgtaacctaattatagatcacaagagaataatataa 23338987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 23344388 - 23344534
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  23344388 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 23344487  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  23344488 tagagctcatatgtaacctaattatagatcacaagagaataatataa 23344534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 40800785 - 40800639
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  40800785 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 40800686  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||    
T  40800685 tagagctcatatgtaacctaattatacataacaagagaataatataa 40800639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 2168798 - 2168652
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  2168798 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtatttctctataaa 2168699  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||| |||||||||||||||||||||||||| ||||    
T  2168698 tagagctcatatgtagcctaattatacatcacaagagaataatataa 2168652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 2174365 - 2174219
Alignment:
Q  20 acaagtgggtgtccatatagcaa-----ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||  ||||||||||||||     ||||||||||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  2174365 acaagtgtatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtatttctctataaa 2174266  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  2174265 tagagctcatatgtaacctaattatacatcacaagagaataatataa 2174219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 13985272 - 13985418
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||    
T  13985272 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgtttgctccccaagtcattgtatttctctataaa 13985371  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||    
T  13985372 tagagatcatatgtaacctaattatacatcacaagagaataatataa 13985418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 3112273 - 3112127
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||  ||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  3112273 acaagtggatgtccatatagcaattgggttataagatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 3112174  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  3112173 tagagctcatatgtaacttaattatacatcacaagagaataatataa 3112127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 40802709 - 40802563
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||  ||||||||||||| ||||| ||||||||||||||||||||    
T  40802709 acaagtggatgtccatatagcaattgagttattggatcatattgttagcttattgggcgatattgtgcttgcttcccaagtcattgtatttctctataaa 40802610  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  40802609 tagagctcatatgtaacttaattatacatcacaagagaataatataa 40802563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 13980775 - 13980657
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| ||||    
T  13980775 ttattgggtcatactattagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaatctaattgtaca 13980676  T
Q  143 tcacaagagaataacataa 161  Q
    |  ||||||||||| ||||    
T  13980675 taccaagagaataatataa 13980657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 48216483 - 48216337
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | | ||||||||||||| |||| || ||||||||||| ||||||||||||||||||||    
T  48216483 acaagtggatgtccatatagcaattgggttattggatcatattgtcagcttattgggccatattttggttgctccccaagtcattgtatttctctataaa 48216384  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  48216383 tagagctcatatgtaacctaattatatatcacaagagaataatataa 48216337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 13992107 - 13991989
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||  ||| ||||||| ||| | ||||||||||||||||||| ||||||||||||||    
T  13992107 ttattgggtcatactattagcttattgggtcatattgtgcttgctcttcaagtcattgtgtttatgtataaatagagctcatatgcaacctaattataca 13992008  T
Q  143 tcacaagagaataacataa 161  Q
    |  ||||||||||| ||||    
T  13992007 tatcaagagaataatataa 13991989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 34578920 - 34578841
Alignment:
Q  59 ttagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaatta 138  Q
    ||||||||||||  | |||||| |||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  34578920 ttagcttattggatcatattgtacttattccccaagtcattgtatttctctataaatagagcttatatgtaacctaatta 34578841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 23 - 116
Target Start/End: Complemental strand, 9724767 - 9724670
Alignment:
Q  23 agtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaata 116  Q
    ||||| ||||||||||||||||     ||||||||||| | ||||||| |||| || ||||||||||||||||||| ||||||||||||||||||||||    
T  9724767 agtggatgtccatatagcaattgggttattggatcatattgttagctttttgg-ccatattgtgcttgctccccaagtcattgtatttctctataaata 9724670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 161
Target Start/End: Complemental strand, 9721612 - 9721564
Alignment:
Q  113 aatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||| ||||||||||||  ||||||||||||||||||||||||| ||||    
T  9721612 aataaagctcatatgtactctaattatacatcacaagagaataatataa 9721564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 131
Target Start/End: Complemental strand, 19307788 - 19307751
Alignment:
Q  94 atcattgtatttctctataaatagagctcatatgtaac 131  Q
    |||||||||||||||||||||||||| ||| |||||||    
T  19307788 atcattgtatttctctataaatagagatcacatgtaac 19307751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 15716636 - 15716782
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  15716636 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 15716735  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  15716736 tagagctcatatgtaacgtaattatacatcacaagagaataatataa 15716782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 26711624 - 26711478
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  26711624 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaa 26711525  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||    
T  26711524 tagagctcatatgtaacctaattagacatcacaagagaataatataa 26711478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 27179089 - 27178971
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27179089 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 27178990  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  27178989 tcacaagagaataatataa 27178971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 43 - 161
Target Start/End: Complemental strand, 27195090 - 27194972
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| | ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27195090 ttattggatcatattgttagcttattgggccatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaattataca 27194991  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  27194990 tcacaagagaataatataa 27194972  T

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Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 15711055 - 15711201
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | |||| ||||||| || ||||||||||||||||||| ||||||||||||| ||||||    
T  15711055 acaagtggatgtccatatagcaattgggttattggatcatattgttagtttattggaccatattgtgcttgctccccaagtcattgtatttctttataaa 15711154  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||    
T  15711155 tagagctcatatgtaacgtaattatacatcacaagagaataatataa 15711201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 33498566 - 33498420
Alignment:
Q  20 acaagtgggtgtccatatagcaatta-----ttggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||      |||||||||| | ||||||||||||||  ||||||||||||||||||| ||||||||||||||||||||    
T  33498566 acaagtggatgtccatatagcaattgggttgttggatcatatttttagcttattgggctatattgtgcttgctccccaagtcattgtatttctctataaa 33498467  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    | ||||| |||||||||||||||||||||||||||||||||| ||||    
T  33498466 tggagcttatatgtaacctaattatacatcacaagagaataatataa 33498420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 20 - 131
Target Start/End: Complemental strand, 33493084 - 33492968
Alignment:
Q  20 acaagtgggtgtccatatagcaatta-----ttggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||      |||||||||| | ||||||||||||||  |||||||||||||||| || ||||||||||||||||||||    
T  33493084 acaagtggatgtccatatagcaattgagttgttggatcatattgttagcttattgggctatattgtgcttgctccctaagtcattgtatttctctataaa 33492985  T
Q  115 tagagctcatatgtaac 131  Q
    ||||||| |||||||||    
T  33492984 tagagcttatatgtaac 33492968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 17721823 - 17721897
Alignment:
Q  87 tccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||    
T  17721823 tccccaagtcattatatttctctataaatagagctcgtatgtaacctaattgtacatcacaagagaataatataa 17721897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 43 - 156
Target Start/End: Complemental strand, 3343996 - 3343879
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccc----caaatcattgtatttctctataaatagagctcatatgtaacctaatta 138  Q
    ||||||| | ||||||||||||||||||| | ||||||||||||| ||    ||| ||||||||||||| |||||||||| || ||||||||||||||||    
T  3343996 ttattgggttatactattagcttattgggtcatattgtgcttgcttccttcccaagtcattgtatttctatataaatagaacttatatgtaacctaatta 3343897  T
Q  139 tacatcacaagagaataa 156  Q
    || || |||||| |||||    
T  3343896 tatataacaagaaaataa 3343879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 90 - 156
Target Start/End: Complemental strand, 16498796 - 16498730
Alignment:
Q  90 ccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataa 156  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||||  | | |||||||||||||    
T  16498796 ccaagtcattgtatctctctataaatagagctcatatgtaacctaattgcataccacaagagaataa 16498730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 9088672 - 9088727
Alignment:
Q  87 tccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||||||||||| ||||||||||||||||||||| |||||||| |||||| ||||    
T  9088672 tccccaaatcattatatttctctataaatagagcttatatgtaatctaattgtaca 9088727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 90
Target Start/End: Complemental strand, 16498854 - 16498817
Alignment:
Q  53 atactattagcttattgggccttattgtgcttgctccc 90  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  16498854 atactattagcttattgggccatattgtgcttgctccc 16498817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 148
Target Start/End: Original strand, 29644985 - 29645039
Alignment:
Q  94 atcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaa 148  Q
    ||||||||| ||||||||||||| |  ||| ||||||| ||||||||||||||||    
T  29644985 atcattgtacttctctataaataaaaatcacatgtaacataattatacatcacaa 29645039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 161
Target Start/End: Complemental strand, 33491559 - 33491525
Alignment:
Q  127 gtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||| ||||    
T  33491559 gtaacctaattatacatcacaagagaataatataa 33491525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 95; Significance: 1e-46; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 351139 - 350993
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | |||||||||||| || ||||||||||||||||||| ||||||||||||||||||||    
T  351139 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattggtccatattgtgcttgctccccaagtcattgtatttctctataaa 351040  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  351039 tagagctcatatgtaacctaattatacatcataagagaataatataa 350993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 20 - 161
Target Start/End: Complemental strand, 345818 - 345672
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  345818 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggccatattgtgcttactccccaagtcattgtatttctctataaa 345719  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||| ||||||||||||||||||||| |||| ||||| ||||    
T  345718 tagagctcacatgtaacctaattatacatcataagaaaataatataa 345672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 1e-46; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 14855949 - 14856095
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||| ||||||||| ||||||||||||||||||  ||||||||||||||||||||    
T  14855949 acaagtggatgtccatatagcaattgggttattggatcatattgttagcatattgggccatattgtgcttgctccccacgtcattgtatttctctataaa 14856048  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||    
T  14856049 tagagctcatatgtaacctaattatacatcacaagagaataatataa 14856095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 49 - 161
Target Start/End: Original strand, 26680617 - 26680728
Alignment:
Q  49 gatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaa 148  Q
    ||||||||| |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26680617 gatcatactgttagtttattgggccttattgtgcttgctccc-aagtcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaa 26680715  T
Q  149 gagaataacataa 161  Q
    |||||||||||||    
T  26680716 gagaataacataa 26680728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 43 - 161
Target Start/End: Original strand, 14847119 - 14847237
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattataca 142  Q
    ||||| ||||||| | ||||||||||||||| ||||||| ||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||    
T  14847119 ttatttgatcatattgttagcttattgggccatattgtgattgctccccacgtcattgtatttctctataaatagaactcatatgtaacctaattataca 14847218  T
Q  143 tcacaagagaataacataa 161  Q
    |||||||||||||| ||||    
T  14847219 tcacaagagaataatataa 14847237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 79; Significance: 4e-37; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 26916 - 27062
Alignment:
Q  20 acaagtgggtgtccatatagcaatt-----attggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaa 114  Q
    |||||||| ||||||||||||||||     ||||||||||| | ||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||    
T  26916 acaagtggatgtccatatagcaattgggttattggatcatattgttagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaa 27015  T
Q  115 tagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||||| |||| | |||| | |||||||||| ||||    
T  27016 tagagctcatatgtaacataataaaacataaaaagagaataatataa 27062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 10998 - 11092
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaatt 137  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  10998 ttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagctcatatataacctaatt 11092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 43 - 137
Target Start/End: Original strand, 8736 - 8830
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaatt 137  Q
    ||||||| ||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||||||||||||||| | |||||||| ||||||    
T  8736 ttattgggtcatactattagcttattgggtcatattgtgcttgctccccaagtcattgtatttctctataaatagagattatatgtaatctaatt 8830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 8e-23; HSPs: 2)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 79 - 161
Target Start/End: Complemental strand, 11509 - 11427
Alignment:
Q  79 gtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||||| ||||    
T  11509 gtgcttgctccccaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataa 11427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 11567 - 11510
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattg 100  Q
    ||||||| |||||||||||||||||||| || ||||||| |||||||| || ||||||    
T  11567 ttattgggtcatactattagcttattggaccatattgtggttgctccctaagtcattg 11510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 51; Significance: 2e-20; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 79 - 161
Target Start/End: Original strand, 39540 - 39622
Alignment:
Q  79 gtgcttgctccccaaatcattgtatttctctataaatagagctcatatgtaacctaattatacatcacaagagaataacataa 161  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||  |||||   |||||||||| ||||    
T  39540 gtgcttgctcctcaagtcattgtatttctctataaatagagctcatatgtaacctaatggtacatactaagagaataatataa 39622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 39482 - 39539
Alignment:
Q  43 ttattggatcatactattagcttattgggccttattgtgcttgctccccaaatcattg 100  Q
    ||||||| || ||||||||||||||||| || |||||||||||||||| || ||||||    
T  39482 ttattgggtcgtactattagcttattggaccatattgtgcttgctccctaagtcattg 39539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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