View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_5 (Length: 494)
Name: NF9501_low_5
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 95 - 483
Target Start/End: Original strand, 34409141 - 34409529
Alignment:
| Q |
95 |
ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409141 |
ttttgcttttattggactatatgaaaaataggggtccgggttcagttatcctgataatgtcatggataatcacattgttcactctatggcaaatggttga |
34409240 |
T |
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| Q |
195 |
aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa |
294 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409241 |
aatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatgcttttggaccaaaattgggtctatatatcattgttccacaa |
34409340 |
T |
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| Q |
295 |
caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34409341 |
caactactcgttgaggttggtacatgtattgcttatatggttactggaggcaaatcattgaagaaggttcaagaatctatatgcccaacatgtacaaaaa |
34409440 |
T |
|
| Q |
395 |
ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctct |
483 |
Q |
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| T |
34409441 |
ttagaacttcctattggattgttatctttgcatctgtaaactttgttctctgtcagtgccccagcttcaactctatttctgctgtctct |
34409529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 34409067 - 34409095
Alignment:
| Q |
18 |
atttataaatatgcatttaaacagagatc |
46 |
Q |
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| T |
34409067 |
atttataaatatgcatttaaacagagatc |
34409095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 43853134 - 43853220
Alignment:
| Q |
154 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgag |
240 |
Q |
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| T |
43853134 |
tcatggataatcaccctctacactctatggcaaatggttgaaatgcatgaaatggttccaggaaaacggtttgataggtaccatgag |
43853220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 154 - 281
Target Start/End: Complemental strand, 7979508 - 7979381
Alignment:
| Q |
154 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
253 |
Q |
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|||||||| |||||||| | ||| || |||||||||||||| |||||||||||||| || |||| | | ||||| || || ||||| | |||||||||| |
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| T |
7979508 |
tcatggatcatcacattctacacactttggcaaatggttgagatgcatgaaatggttccgggaaaacgctttgatagataccatgaattaggtcaacatg |
7979409 |
T |
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| Q |
254 |
cttttggaccaaaattgggtctatatat |
281 |
Q |
| |
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||||||| |||||| ||||| ||||| |
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| T |
7979408 |
cttttgggaaaaaattaggtctttatat |
7979381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 154 - 299
Target Start/End: Complemental strand, 14198905 - 14198760
Alignment:
| Q |
154 |
tcatggataatcacattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaacatg |
253 |
Q |
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|||||| | |||||||| | ||| |||||||||||||||| |||||||||||||| || || | | | || || || |||||||| || |||||| ||| |
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| T |
14198905 |
tcatggttcatcacattatacacgttatggcaaatggttgagatgcatgaaatggtacccgggaaacgtttcgatagatatcatgaactgggtcaatatg |
14198806 |
T |
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| Q |
254 |
cttttggaccaaaattgggtctatatatcattgttccacaacaact |
299 |
Q |
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| T |
14198805 |
cttttggtgaaaagttgggtctgtatattgttgtgccacaacaact |
14198760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 249
Target Start/End: Complemental strand, 38827460 - 38827385
Alignment:
| Q |
174 |
cactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatgagcttggtcaa |
249 |
Q |
| |
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|||| |||||||||||||||| ||||||||||| || || |||| ||||| || |||||||||||| | |||||| |
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| T |
38827460 |
cactatatggcaaatggttgagatgcatgaaatagttcccggaaagagattggataggtatcatgagttgggtcaa |
38827385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 42986447 - 42986374
Alignment:
| Q |
166 |
acattgttcactctatggcaaatggttgaaatgcatgaaatggtgccaggaacaagatttgacaggtatcatga |
239 |
Q |
| |
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||||||| |||| |||||||||| |||||||||||||| || |||||| ||||||||||| ||||||||| |
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| T |
42986447 |
acattgtacactgcatggcaaatgattgaaatgcatgaatccgtatcaggaaaaagatttgacaagtatcatga |
42986374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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