View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9501_low_6 (Length: 467)
Name: NF9501_low_6
Description: NF9501
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9501_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 451
Target Start/End: Original strand, 45378369 - 45378808
Alignment:
| Q |
9 |
agaagcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttgaggttcaaactacctaggtatttggcgtatgc |
108 |
Q |
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| T |
45378369 |
agaagcagagacgatttgatttaagatgaagataactgagaaaacggttaaacgagtaaagtttgttcaggttcaaactacataggtatttggcgtatgc |
45378468 |
T |
|
| Q |
109 |
aagtggaattctttctaaacaataggaatggtccctctctcatatacaattaataataaataatgtttgtgatgaaatgaatcgagggacacgtggaaag |
208 |
Q |
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| T |
45378469 |
aagtgcaattctttctaaacaataggaatggtccctctctcatatacaattaat---aaataatgtttctgatgaaatgaatcgagggacacgtggaaag |
45378565 |
T |
|
| Q |
209 |
agaagagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagataataaataatatgtcatcttatttagtttgtttcatgat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
45378566 |
agaagagttggtattggattctgccttggacgtgtcatatttagtttagcaccgtccagatgataaataatatgtcatcttatttagtttgtttcatgat |
45378665 |
T |
|
| Q |
309 |
taggtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcga |
408 |
Q |
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| T |
45378666 |
taggtcaatttttatgaaaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcga |
45378765 |
T |
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| Q |
409 |
ttaatctgcttcatcaatccctatctgatgatcatgaaagtac |
451 |
Q |
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| T |
45378766 |
ttaatctgcttcatcaatccctatctgatgatcatgaaagtac |
45378808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 326 - 451
Target Start/End: Original strand, 33087295 - 33087421
Alignment:
| Q |
326 |
aaggttatttgtttccttgcctaaagcataagccacgtgtgcacaaaatttaacaacacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
425 |
Q |
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||||||||||| ||||||||| |||||| |||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33087295 |
aaggttatttgcttccttgcccaaagcacaagc-acgtgtgcacaaaatggaacagcacaagcatgttgccgacatgtggcgattaatctgcttcatcaa |
33087393 |
T |
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| Q |
426 |
tccctatct--gatgatcatgaaagtac |
451 |
Q |
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||||||| | |||||||||||||||| |
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| T |
33087394 |
tccctattttatatgatcatgaaagtac |
33087421 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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