View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9502_4 (Length: 349)

Name: NF9502_4
Description: NF9502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9502_4
NF9502_4
[»] chr8 (9 HSPs)
chr8 (1-267)||(9624261-9624544)
chr8 (7-102)||(54218-54315)
chr8 (7-135)||(29610981-29611112)
chr8 (50-126)||(7591382-7591459)
chr8 (50-171)||(30501238-30501354)
chr8 (7-126)||(15001514-15001636)
chr8 (10-126)||(10932787-10932905)
chr8 (50-126)||(41548711-41548788)
chr8 (7-135)||(16595076-16595206)
[»] chr5 (4 HSPs)
chr5 (7-135)||(4689615-4689746)
chr5 (50-170)||(32528808-32528923)
chr5 (72-132)||(14011173-14011233)
chr5 (50-129)||(26180217-26180297)
[»] scaffold0025 (1 HSPs)
scaffold0025 (50-126)||(5365-5442)
[»] chr7 (2 HSPs)
chr7 (50-126)||(1363733-1363810)
chr7 (50-135)||(21408539-21408625)
[»] chr4 (8 HSPs)
chr4 (50-126)||(26083435-26083512)
chr4 (50-126)||(50178405-50178482)
chr4 (50-126)||(50729455-50729532)
chr4 (50-171)||(20517895-20518012)
chr4 (72-132)||(9807273-9807334)
chr4 (50-126)||(11056138-11056215)
chr4 (50-118)||(36497313-36497382)
chr4 (50-126)||(44640419-44640496)
[»] chr3 (4 HSPs)
chr3 (50-126)||(19906856-19906933)
chr3 (50-126)||(41682967-41683044)
chr3 (50-126)||(3867563-3867640)
chr3 (50-126)||(50386370-50386447)
[»] chr1 (6 HSPs)
chr1 (50-126)||(42512765-42512842)
chr1 (67-135)||(47242502-47242571)
chr1 (80-132)||(7146892-7146945)
chr1 (50-126)||(7837235-7837312)
chr1 (50-135)||(31574456-31574541)
chr1 (7-171)||(6029252-6029418)
[»] chr2 (3 HSPs)
chr2 (72-135)||(83385-83449)
chr2 (57-126)||(6896268-6896338)
chr2 (72-135)||(38623215-38623279)
[»] chr6 (6 HSPs)
chr6 (50-124)||(9614067-9614142)
chr6 (7-126)||(18597117-18597239)
chr6 (50-126)||(10485250-10485327)
chr6 (88-132)||(14925170-14925215)
chr6 (72-132)||(14925409-14925470)
chr6 (50-129)||(35004084-35004164)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 9624261 - 9624544
Alignment:
Q  1 catgaaacaaaaagttgtgttatggtttagcaagggtcgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttaca 100  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9624261 catgaaacaaaaagttgtgttgtggtttagcaagggtcgaaaatttatgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttaca 9624360  T
Q  101 aacaaacagtgtacaactgaagttgtcatgtcatgccatgttcttcattcttttagcagatcaaacgcacctaattgtatcat-------atttgactta 193  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||       ||||||||||    
T  9624361 aataaacagtgtacaactgaagttgtcatgtcatgtcatgttcttcatttttttagcagatcaaacgcacctaattgtatcatatttttcatttgactta 9624460  T
Q  194 tctcaaataattcatctttctctcaatttgttttctt----------tcaatcgtgctttttaacatgatatagagttagaccg 267  Q
    |||||||| ||||||||||||||||||||||||||||          |||||||||||||||||||||||||||||||||||||    
T  9624461 tctcaaatgattcatctttctctcaatttgttttcttttagttgggctcaatcgtgctttttaacatgatatagagttagaccg 9624544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 7 - 102
Target Start/End: Original strand, 54218 - 54315
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa 102  Q
    ||||||||||||| | ||||||||||| || | ||||||||||  ||||||||||| ||||| ||| | ||||| |||| |||||||| |||||||||    
T  54218 acaaaaagttgtgatgtggtttagcaaaggacaaaaatttatgtttttgtcatgtcccttgtgtccggattgtcatgtctcagaaacagttttacaaa 54315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 29611112 - 29610981
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| |||||| || |||| | |||||||   | |||||| |||| |||| |||| ||||||  |||||| |||||| ||||||||| |    
T  29611112 acaaaaagttgtgttgtggtttggcgagggacaaaaatttcagtttttgtcctgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatc 29611013  T
Q  104 aaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||| || ||||||||||||||  |||||||    
T  29611012 aaacattggacaactgaagttgttctgtcatg 29610981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 7591459 - 7591382
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7591459 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 7591382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 171
Target Start/End: Original strand, 30501238 - 30501354
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatgccatgttcttcat 148  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| ||  |||||||||||||    || |||||||| ||||||    
T  30501238 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgggcaactgaagttgt----tc-tgccatgtccttcat 30501332  T
Q  149 tcttttagcagatcaaacgcacc 171  Q
    | |||||||| ||||||||||||    
T  30501333 t-ttttagcaaatcaaacgcacc 30501354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 126
Target Start/End: Original strand, 15001514 - 15001636
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatgttt--gtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| |||||| |  |||| | |||||||  ||||  ||  ||||| ||| |||| ||||||| |||||| |||||| ||||||||| |    
T  15001514 acaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgttctgtctattgcctccagtttgtcctgtccctgaaacagttttacaaatc 15001613  T
Q  104 aaacagtgtacaactgaagttgt 126  Q
    ||||| || ||||||||||||||    
T  15001614 aaacactggacaactgaagttgt 15001636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 10 - 126
Target Start/End: Original strand, 10932787 - 10932905
Alignment:
Q  10 aaaagttgtgttatggtttagcaagggtcgaaaattta-tgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaac 107  Q
    |||||||||| | ||||||||  |||| | ||| |||| | ||| |||||||||||| |||   |||||||||||||| ||||||||||| ||| |||||    
T  10932787 aaaagttgtgatgtggtttagtgagggacaaaattttagtttttatcatgtctcttgcctctactttgtcttgtcccataaacaattttataaatcaaac 10932886  T
Q  108 agtgtacaactgaagttgt 126  Q
    |   |||||||||||||||    
T  10932887 accatacaactgaagttgt 10932905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 41548711 - 41548788
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| |||  | |||||| ||||||||| |||||| || ||||||||||||||    
T  41548711 tttgtcctgtctcttgcctccagtttgtcatgtatctgaaacagttttacaaatcaaacactggacaactgaagttgt 41548788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 16595206 - 16595076
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatgttt--gtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| ||| ||||| |||| | ||| || ||||||  ||| |||| |||| || | ||||||  |||||||||||||| |||||||| |    
T  16595206 acaaaaagttgtgttgtggattagcgagggacaaaacttcatgtttttgtcctgtcccttgcctacagtttgttctgtcccagaaacaa-tttacaaatc 16595108  T
Q  104 aaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||| | ||||||||  |||||| |||||||    
T  16595107 aaacaatatacaactggtgttgtcctgtcatg 16595076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 7 - 135
Target Start/End: Complemental strand, 4689746 - 4689615
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| |||||| |  |||| | ||||| | ||  |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |    
T  4689746 acaaaaagttgtgttgtggtttggtgagggacaaaaatatgtgtttttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatc 4689647  T
Q  104 aaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||| || ||||||||||||||  |||||||    
T  4689646 aaacactggacaactgaagttgttctgtcatg 4689615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 170
Target Start/End: Original strand, 32528808 - 32528923
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatgccatgttcttcat 148  Q
    |||||| |||| ||||||||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||  ||||||| ||||||| |     ||||||    
T  32528808 tttgtcctgtcccttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaacactgaacaactagagttgtcctgtcatgtc-----cttcat 32528902  T
Q  149 tcttttagcagatcaaacgcac 170  Q
    | |||||||| |||||||||||    
T  32528903 t-ttttagcaaatcaaacgcac 32528923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 14011233 - 14011173
Alignment:
Q  72 gtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtc 132  Q
    ||||||| ||||||  ||||||||| |||| ||||||  ||||||||||||||||| ||||    
T  14011233 gtttgtcatgtccctaaaacaatttcacaatcaaacatagtacaactgaagttgtcctgtc 14011173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 26180297 - 26180217
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 129  Q
    |||||||| ||| ||||||||  ||| || ||||||| ||||| ||||||||| |||| | |||| |||||||||||||||    
T  26180297 tttgtcatatcttttgtctccaatttatcatgtcccaaaaacagttttacaaatcaaatattgtataactgaagttgtcat 26180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 5442 - 5365
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| |||| |||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  5442 tttgtcctgtcccttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 5365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 1363733 - 1363810
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    ||||||||||| |||| |||| ||||||| ||| |  |||||||||||||||| |||||| || ||||||||||||||    
T  1363733 tttgtcatgtcccttgcctccagtttgtcctgtacatgaaacaattttacaaatcaaacactggacaactgaagttgt 1363810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 21408625 - 21408539
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||||||||| |||| |||| |||||| |||||||| |||||  |||||||| |||| | |||||||||  || ||||||||||||    
T  21408625 tttgtcatgtcccttgcctccagtttgtgttgtcccaaaaacagctttacaaatcaaatattgtacaactagagatgtcatgtcatg 21408539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 26083435 - 26083512
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||||||||||||| |||||| |  ||||||||||||||    
T  26083435 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactaaacaactgaagttgt 26083512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 50178482 - 50178405
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  50178482 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 50178405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 50729532 - 50729455
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    ||||||||||| |||| |||| ||||||  |||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  50729532 tttgtcatgtcccttgcctccagtttgttctgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 50729455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 171
Target Start/End: Complemental strand, 20518012 - 20517895
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatgccatgttcttcat 148  Q
    |||||| ||||||||| |||| ||||||||||| || |||||| ||||||||| |||||| || ||||||  ||||||  |||     | ||| ||||||    
T  20518012 tttgtcctgtctcttgcctccagtttgtcttgtacctgaaacagttttacaaatcaaacactgaacaactagagttgttctgt-----cctgtccttcat 20517918  T
Q  149 tcttttagcagatcaaacgcacc 171  Q
    | |||||||| ||||||||||||    
T  20517917 ttttttagcaaatcaaacgcacc 20517895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 9807273 - 9807334
Alignment:
Q  72 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 132  Q
    ||||||||||| || |||||| ||||||||| |||||| || ||||||||||||||| ||||    
T  9807273 gtttgtcttgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcctgtc 9807334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 11056138 - 11056215
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| |||| |||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  11056138 tttgtcttgtcccttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 11056215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 36497313 - 36497382
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaact 118  Q
    |||||| |||||||||||||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||    
T  36497313 tttgtcctgtctcttgtctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaact 36497382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 44640419 - 44640496
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||  ||||||| | | ||| ||||| ||||||||| |||||| |||||||||||||||||    
T  44640419 tttgtcttgtctcttgcctctagtttgtcattttccataaacagttttacaaatcaaacactgtacaactgaagttgt 44640496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 19906856 - 19906933
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| |||| |||| |||| ||||||  |||||| |||||||||||||||| |||||| || ||||||||||||||    
T  19906856 tttgtcctgtcccttgcctccagtttgttctgtccctgaaacaattttacaaatcaaacactggacaactgaagttgt 19906933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 41683044 - 41682967
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  41683044 tttgtcttgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 41682967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 3867640 - 3867563
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    ||||||||||||||||||||| || |||  |||||| |||||| ||||||||| ||||||  | ||||||| ||||||    
T  3867640 tttgtcatgtctcttgtctccagtatgttctgtccctgaaacagttttacaaatcaaacaccggacaactggagttgt 3867563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 50386447 - 50386370
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||||||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| |  ||||||| ||||||    
T  50386447 tttgtcatgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactagacaactggagttgt 50386370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 126
Target Start/End: Complemental strand, 42512842 - 42512765
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  42512842 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgt 42512765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 47242571 - 47242502
Alignment:
Q  67 ctcccgtttgtcttgtcccagaaacaattttacaaac-aaacagtgtacaactgaagttgtcatgtcatg 135  Q
    |||| ||||||| ||||||| |||||||||||||||  |||||   ||||||||||||||||||||||||    
T  47242571 ctccagtttgtcatgtcccataaacaattttacaaattaaacaccatacaactgaagttgtcatgtcatg 47242502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 80 - 132
Target Start/End: Original strand, 7146892 - 7146945
Alignment:
Q  80 tgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 132  Q
    ||||||| ||||||||||||||| |||||| | ||||||||||||||| |||||    
T  7146892 tgtcccaaaaacaattttacaaatcaaacactatacaactgaagttgttatgtc 7146945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 7837235 - 7837312
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    ||||||||||| |||| |||  ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||    
T  7837235 tttgtcatgtcccttgcctctagtttgtcatgttcctgaaacagttttacaaatcaaacactgaacaactgaagttgt 7837312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 135
Target Start/End: Original strand, 31574456 - 31574541
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaacaaacagtgtacaactgaagttgtcatgtcatg 135  Q
    |||||||||| |||| ||||| |||||| ||||    |||| | |||||||||  || | ||||||||||||||||||||||||||    
T  31574456 tttgtcatgtttcttatctccagtttgttttgtttttgaaatagttttacaaatcaaaattgtacaactgaagttgtcatgtcatg 31574541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 7 - 171
Target Start/End: Complemental strand, 6029418 - 6029252
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaattt--atgtttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| |||||| |  |||| | |||||||   | |||||| |||| |||| || | ||||||  |||||| |||||| ||||||||| |    
T  6029418 acaaaaagttgtgttgtggtttggtgagggacaaaaatttcagtttttgtcctgtcccttgccttcagtttgttctgtccctgaaacagttttacaaatc 6029319  T
Q  104 aaacagtgtacaactgaagttgtcatgtcatgccatgttcttcattcttttagcagatcaaacgcacc 171  Q
    ||||| || ||||||| ||||||  |||| || | ||| ||||||| ||||| || ||||||||||||    
T  6029318 aaacactggacaactggagttgttctgtcctgtcctgtccttcatt-ttttaacaaatcaaacgcacc 6029252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 72 - 135
Target Start/End: Original strand, 83385 - 83449
Alignment:
Q  72 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||||| ||||||| ||||| ||||||||| |||||| ||| |||||||||||||| |||||||    
T  83385 gtttgtcatgtcccacaaacagttttacaaatcaaacactgtgcaactgaagttgtcttgtcatg 83449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 126
Target Start/End: Original strand, 6896268 - 6896338
Alignment:
Q  57 tgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||| |||| |||| |||||| ||||||| |||||| ||||||||| |||||| || ||||||||||||||    
T  6896268 tgtcccttgcctccagtttgttttgtccctgaaacagttttacaaatcaaacactggacaactgaagttgt 6896338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 135
Target Start/End: Complemental strand, 38623279 - 38623215
Alignment:
Q  72 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtcatg 135  Q
    ||||||| |||||| |||||| ||||||||| |||||| || | |||||||||||| ||||||||    
T  38623279 gtttgtcctgtccctgaaacagttttacaaatcaaacattggataactgaagttgttatgtcatg 38623215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 124
Target Start/End: Original strand, 9614067 - 9614142
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagtt 124  Q
    ||||||||||| |||| |||| |||| || |||||  |||||| ||||||||| |||||| |||||||||||||||    
T  9614067 tttgtcatgtcccttgcctccagtttatcctgtccttgaaacagttttacaaatcaaacattgtacaactgaagtt 9614142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 7 - 126
Target Start/End: Complemental strand, 18597239 - 18597117
Alignment:
Q  7 acaaaaagttgtgttatggtttagcaagggtcgaaaatttatg--tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-c 103  Q
    ||||||||||||||| |||||| |  |||| | |||||||  |  ||||||||||| |||| |||| ||||||| | |||| |||||| ||||||||| |    
T  18597239 acaaaaagttgtgttgtggtttggtgagggacaaaaatttcagattttgtcatgtcccttgcctccggtttgtcatatccctgaaacagttttacaaatc 18597140  T
Q  104 aaacagtgtacaactgaagttgt 126  Q
    ||||| || ||||||||| ||||    
T  18597139 aaacactgaacaactgaaattgt 18597117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 126
Target Start/End: Original strand, 10485250 - 10485327
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgt 126  Q
    |||||| ||||||||| |||| ||||||| ||| || |||| ||||||||||| |||||| || ||||||| ||||||    
T  10485250 tttgtcctgtctcttgcctccagtttgtcctgtacctgaaataattttacaaatcaaacactggacaactggagttgt 10485327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 14925215 - 14925170
Alignment:
Q  88 aaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 132  Q
    ||||||||||||||| |||||| || ||||||||||||||||||||    
T  14925215 aaacaattttacaaatcaaacactggacaactgaagttgtcatgtc 14925170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 14925470 - 14925409
Alignment:
Q  72 gtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcatgtc 132  Q
    ||||||| ||| || |||||| ||||||||| |||||| || ||||||||||||||||||||    
T  14925470 gtttgtcctgtacctgaaacagttttacaaatcaaacactggacaactgaagttgtcatgtc 14925409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 129
Target Start/End: Complemental strand, 35004164 - 35004084
Alignment:
Q  50 tttgtcatgtctcttgtctcccgtttgtcttgtcccagaaacaattttacaaa-caaacagtgtacaactgaagttgtcat 129  Q
    |||||| |||||||||||||| |||| |||||||| | ||||  ||||||||| ||||||  | ||||||| |||||||||    
T  35004164 tttgtcttgtctcttgtctccggtttatcttgtcctataaaccgttttacaaatcaaacaccgcacaactggagttgtcat 35004084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University