View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9502_low_1 (Length: 328)
Name: NF9502_low_1
Description: NF9502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9502_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 15 - 316
Target Start/End: Original strand, 43365116 - 43365417
Alignment:
| Q |
15 |
aatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgccc |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365116 |
aatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgccc |
43365215 |
T |
|
| Q |
115 |
caagttattgaaaatgcaccaccacttttaggtataacatggtatataataatgtttcttcacatatatcattatcaacatgtcatcttatactaaagct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365216 |
caagttattgaaaatgcaccaccacttttaggtataacatggtatataataatgtttcttcacatatatcattatcaacatgtcatcttatactaaagct |
43365315 |
T |
|
| Q |
215 |
ttacattgcatgaatattataactaataaagtatatatactaccaacttttgttaagggattgagcatgttggaggagatatgtttgcaagtgttccaca |
314 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43365316 |
ttacattgcatgaatattataactaacaaagtatatatactaccaacttttgttaagggattgagcatgttggaggagatatgtttgcaagtgttccaca |
43365415 |
T |
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| Q |
315 |
gg |
316 |
Q |
| |
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|| |
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| T |
43365416 |
gg |
43365417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 270 - 312
Target Start/End: Complemental strand, 13393828 - 13393786
Alignment:
| Q |
270 |
agggattgagcatgttggaggagatatgtttgcaagtgttcca |
312 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
13393828 |
agggcttgagcatgttggaggagatatgtttgaaagtgttcca |
13393786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 277 - 312
Target Start/End: Complemental strand, 13382391 - 13382356
Alignment:
| Q |
277 |
gagcatgttggaggagatatgtttgcaagtgttcca |
312 |
Q |
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||||||||||||||||||||||||| |||||||||| |
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| T |
13382391 |
gagcatgttggaggagatatgtttgaaagtgttcca |
13382356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 3390264 - 3390142
Alignment:
| Q |
15 |
aatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgccc |
114 |
Q |
| |
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|||||||||| |||||||||| |||||||||| ||||| | ||| || |||| ||||||||||| |||| |||||||| ||| || |||||||| || |
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| T |
3390264 |
aatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctccca |
3390165 |
T |
|
| Q |
115 |
caagttattgaaaatgcaccacc |
137 |
Q |
| |
|
||||| |||||| |||||||||| |
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| T |
3390164 |
caagtgattgaacatgcaccacc |
3390142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 3403547 - 3403425
Alignment:
| Q |
15 |
aatatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgccc |
114 |
Q |
| |
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|||||||||| |||||||||| |||||||||| ||||| | ||| || |||| ||||||||||| |||| |||||||| ||| || |||||||| || |
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| T |
3403547 |
aatatcaacactggttgatgtaggaggtggaaatggacaatgtctcaaaatgattatatccaaatatccatcaataaaggcaatcaattttgatctccca |
3403448 |
T |
|
| Q |
115 |
caagttattgaaaatgcaccacc |
137 |
Q |
| |
|
||||| |||||| |||||||||| |
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| T |
3403447 |
caagtgattgaacatgcaccacc |
3403425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 137
Target Start/End: Complemental strand, 3369905 - 3369797
Alignment:
| Q |
29 |
ttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgccccaagttattgaaaa |
128 |
Q |
| |
|
||||||| |||||||||| ||||| || ||| || || ||||||||||| |||| |||||||| ||| |||||||| || || ||||| |||||||| |
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| T |
3369905 |
ttgatgtaggaggtggaaatggacaaagtctcaaagccattatatccaaatatccatcaataaaggcaatcaactttgacctcccacaagtgattgaaaa |
3369806 |
T |
|
| Q |
129 |
tgcaccacc |
137 |
Q |
| |
|
||||||||| |
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|
| T |
3369805 |
tgcaccacc |
3369797 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 130
Target Start/End: Complemental strand, 3299014 - 3298901
Alignment:
| Q |
17 |
tatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgcccca |
116 |
Q |
| |
|
||||||| ||||||||||| |||||||| | ||||| || ||| | ||||| || |||||||||||| |||||||| ||| || ||||| || || || |
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| T |
3299014 |
tatcaactttggttgatgtaggaggtggcaatggacaaactctcaagttgattattgccaaatacccatcaataaaggcaatcaattttgaccttccaca |
3298915 |
T |
|
| Q |
117 |
agttattgaaaatg |
130 |
Q |
| |
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||| ||||| |||| |
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| T |
3298914 |
agtgattgacaatg |
3298901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 270 - 314
Target Start/End: Complemental strand, 3348363 - 3348319
Alignment:
| Q |
270 |
agggattgagcatgttggaggagatatgtttgcaagtgttccaca |
314 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
3348363 |
agggattgagcatgttggaggaagcatgtttgaaagtgttccaca |
3348319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 17 - 137
Target Start/End: Original strand, 23993529 - 23993649
Alignment:
| Q |
17 |
tatcaacattggttgatgttggaggtggaagtggacgaaatcttgaattgataatatccaaatacccattaataaagggaattaactttgatctgcccca |
116 |
Q |
| |
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||||||| |||||||||| |||||||| ||||||| || ||| || || || ||||||| |||| |||||||||||| || |||||||| || || |
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| T |
23993529 |
tatcaactatggttgatgtaggaggtggcagtggacaaagtctcaaaactattattgccaaatatccatcaataaagggaatcaattttgatcttcctca |
23993628 |
T |
|
| Q |
117 |
agttattgaaaatgcaccacc |
137 |
Q |
| |
|
||| ||||||||||||||||| |
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| T |
23993629 |
agtcattgaaaatgcaccacc |
23993649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 138
Target Start/End: Complemental strand, 20720431 - 20720367
Alignment:
| Q |
74 |
ccaaatacccattaataaagggaattaactttgatctgccccaagttattgaaaatgcaccacca |
138 |
Q |
| |
|
|||||||||||| |||||||| ||| || ||||| || || ||||| |||||||||||||||||| |
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|
| T |
20720431 |
ccaaatacccatcaataaaggcaatcaattttgacctaccacaagtgattgaaaatgcaccacca |
20720367 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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