View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9503_3 (Length: 303)
Name: NF9503_3
Description: NF9503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9503_3 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 3480019 - 3480210
Alignment:
| Q |
1 |
tgcttgtaaatttgtttataataagtcggagcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcgaaa |
100 |
Q |
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| T |
3480019 |
tgcttgtaaatttgtttataataagtcggggcagctcacaccttacattggatgagttaagcccaaccaaaattttaagacaatgcaagtaacttcaaaa |
3480118 |
T |
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| Q |
101 |
agcaaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
192 |
Q |
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| T |
3480119 |
agcaaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttctgc |
3480210 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 3455519 - 3455606
Alignment:
| Q |
103 |
caaaataacaatttttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
190 |
Q |
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| T |
3455519 |
caaaataacaatatttacctgatctgttatttccattcccatatagtttactccaattgtttcacctgccttgctaaacacaggttct |
3455606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 43211774 - 43211855
Alignment:
| Q |
193 |
tcgttcactgtgcaaaataaggaatgagatcacggatccataaaaggacgaatactttagaacaagaaactcagcaagaaag |
274 |
Q |
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| T |
43211774 |
tcgttccctgtgcaaaataaggaatgaggtcacggatccataaaaggacgaatactttagaacaagaaactcagcaagaaag |
43211855 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 48694814 - 48694740
Alignment:
| Q |
116 |
tttacctgatcggttatttccattcccatatggtttactccaattgtttctcctgccttgctaaacacaggttct |
190 |
Q |
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| T |
48694814 |
tttacctgatcggttacatccattcccatgtaattgattccaattgtttcacctgccttgctgaatacaggttct |
48694740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 25928745 - 25928785
Alignment:
| Q |
200 |
ctgtgcaaaataaggaatgagatcacggatccataaaagga |
240 |
Q |
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| T |
25928745 |
ctgtacaaaataaggaatgatatcatggatccataaaagga |
25928785 |
T |
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