View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9503_low_1 (Length: 543)
Name: NF9503_low_1
Description: NF9503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9503_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 508; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 1 - 524
Target Start/End: Complemental strand, 43265552 - 43265029
Alignment:
| Q |
1 |
cagttatcccttcaaagaaagccagatgacctccatgctttaaagtagctaacacaatatttttatttgccctgtcaaaagagtaacacataaaaatggg |
100 |
Q |
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| T |
43265552 |
cagttatcccttcaaagaaagccagatgacctccatgctttaaagtagctaacacaatatttttatttgccctgtcaaaagagtaacacataaaaatggg |
43265453 |
T |
|
| Q |
101 |
tgttgaagtaatgcaacagaaatagaaggcaaattaattataagttaataactaacaacaaagcagcctacttgcattcatcccagggaatggcttcggt |
200 |
Q |
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| T |
43265452 |
tgttgaagtaatgcaacagaaatagaaggcaaattaattataagttaataactaacaacaaagcagcctacttgcattcatcccagggaatggcttcggt |
43265353 |
T |
|
| Q |
201 |
ggtacagacaggatcatccagagcactaatacagagaagcggaactgatacagattgcacgtaagtagaactgctgcagcgtctatagtacgtatcaaca |
300 |
Q |
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| T |
43265352 |
ggtacagacaggatcatccagagcactaatacagagaagcggaactgatacagattgcacgtaagtagaactgctgcagcgtctatagtacgtatcaaca |
43265253 |
T |
|
| Q |
301 |
gtctaaagaaacaaaaatattttagatagcagacatgaggagccagataagagatgataggagaaaaatttaatatcgagtgctacatgtacctcatact |
400 |
Q |
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| T |
43265252 |
gtctaaagaaacaaaaatattttagatagcagacatgaggagccagagaagagatgataggagaaaaatttaatatcgggtgctacatgtacctcatact |
43265153 |
T |
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| Q |
401 |
tcccaaccatgcgggtggcgtgatcgtcaaaatctcgaacagaaagtgcctgcaaagaattcatatgcactcagcactagttacattttacaaaaattcg |
500 |
Q |
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| T |
43265152 |
tcccaaccatgcgggtggcgtgatcgtcaaaatctcgaacagaaagtgcctgcaaagaatacatatgcactcagcactagttacattttacaaaacttcg |
43265053 |
T |
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| Q |
501 |
ccaaagcaaaaatacggaacagca |
524 |
Q |
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| T |
43265052 |
ccaaagcaaaaatacggaacagca |
43265029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 160 - 314
Target Start/End: Complemental strand, 43277654 - 43277500
Alignment:
| Q |
160 |
aaagcagcctacttgcattcatcccagggaatggcttcggtggtacagacaggatcatccagagcactaatacagagaagcggaactgatacagattgca |
259 |
Q |
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|||||| | ||| ||||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
43277654 |
aaagcaacatacctgcattcatcccagggaatggcttccctggtacataccggatcatccagagcactaatacagagaagaggaatcgatacagattgca |
43277555 |
T |
|
| Q |
260 |
cgtaagtagaactgctgcagcgtctatagtacgtatcaacagtctaaagaaacaa |
314 |
Q |
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| T |
43277554 |
cataaatagagctgctattgcgtctatagtatgtatcaacagtctaaagaaacaa |
43277500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 43277814 - 43277729
Alignment:
| Q |
1 |
cagttatcccttcaaagaaagccagatgacctccatgctttaaagtagctaacacaatatttttatttgccctgtcaaaagagtaa |
86 |
Q |
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||||||| ||||||||||| |||||||| ||||||||||||||||| || ||||| | ||||||||||||||| | | |||||||| |
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| T |
43277814 |
cagttattccttcaaagaaggccagatgtcctccatgctttaaagtggccaacacgacatttttatttgccctataagaagagtaa |
43277729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 456
Target Start/End: Complemental strand, 43277416 - 43277347
Alignment:
| Q |
387 |
atgtacctcatacttcccaaccatgcgggtggcgtgatcgtcaaaatctcgaacagaaagtgcctgcaaa |
456 |
Q |
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|||||||||||| |||||||| ||||||||||| || | ||||||||||||| ||||||| ||||||| |
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| T |
43277416 |
atgtacctcatatttcccaacaatgcgggtggcatggttatcaaaatctcgaattgaaagtgactgcaaa |
43277347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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