View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9503_low_2 (Length: 443)
Name: NF9503_low_2
Description: NF9503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9503_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 32425939 - 32426366
Alignment:
| Q |
1 |
taaccagaaataagtaactaaatacaatatataccaaagataacaaatatcagcaggaactcaaaagaaagtttgtttaaagaacatcctaaattttgtt |
100 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32425939 |
taaccagaaataagtaactaaatacaatatacaccaaagataacaaatatcagcaggaactcaaaagaaagtttgtttaaagaacatcctaaattttgtt |
32426038 |
T |
|
| Q |
101 |
agatgatacctaatagcgcacataaacgtagatgcaacaagcatctctatggtatcatgactgattcacagtttcaatatatttttaaaccagaagtttt |
200 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
32426039 |
agatgatacccaatagcgcacataaatgtagatgcaacaagcatctctatggtgtcatgactgattcacagtttcaatatatttttaaaccagaactttt |
32426138 |
T |
|
| Q |
201 |
cattttcatgaaataaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccacc |
300 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426139 |
cattttcatgaaataaaaccagaaattcacaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccacc |
32426238 |
T |
|
| Q |
301 |
agatcagaaccttttcgaacaaaagaaagtgcaatcatgtcaatattattaggaactccccataccatgatatcttccttgtctttctcagtcaatgttg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32426239 |
agatcagaaccttttcgaacaaaagaaagtgcaatcatgtcaatattattaggaactccccataccatgatatcttccttgtctttctcagtcaatgttg |
32426338 |
T |
|
| Q |
401 |
ggagatccactatgactccaggaagatt |
428 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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|
| T |
32426339 |
ggagatccactatgactccaggaagatt |
32426366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 215 - 428
Target Start/End: Original strand, 32419887 - 32420100
Alignment:
| Q |
215 |
aaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccaccagatcagaaccttt |
314 |
Q |
| |
|
|||| |||||||||| || ||| |||||||||||||||||||| |||||||||||||| | ||| | || || ||||||| |||||||||||||||||| |
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|
| T |
32419887 |
aaaatcagaaattcataacatagcatacctttgacatgagaagaatgttcttagcatggtgtcctagcagtttccgaacttgcaccagatcagaaccttt |
32419986 |
T |
|
| Q |
315 |
tcgaacaaaagaaagtgcaatcatgtcaatattattaggaactccccataccatgatatcttccttgtctttctcagtcaatgttgggagatccactatg |
414 |
Q |
| |
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||||||||| ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| || || |||||||||| |
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| T |
32419987 |
tcgaacaaatgaaagcgcaatcatgtcaattttattgggaactccccaagccatgatatcttccttgtctttctcagtcaaagtgggaagatccactaca |
32420086 |
T |
|
| Q |
415 |
actccaggaagatt |
428 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
32420087 |
actccaggcagatt |
32420100 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 215 - 428
Target Start/End: Original strand, 40597039 - 40597252
Alignment:
| Q |
215 |
aaaaccagaaattcagaatataccatacctttgacatgagaagtatgttcttagcatgttttcccaacaacttgcgaacttccaccagatcagaaccttt |
314 |
Q |
| |
|
|||| |||||||||| |||||| |||||||||||||||||||| |||||||||||||| | ||| | || || ||||||| |||||||||||||||||| |
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|
| T |
40597039 |
aaaatcagaaattcataatatagcatacctttgacatgagaagaatgttcttagcatggtgtcctagcagtttccgaacttgcaccagatcagaaccttt |
40597138 |
T |
|
| Q |
315 |
tcgaacaaaagaaagtgcaatcatgtcaatattattaggaactccccataccatgatatcttccttgtctttctcagtcaatgttgggagatccactatg |
414 |
Q |
| |
|
|||||||||||| ||||||||||||||||| ||||| ||||| ||||| ||||| ||||||||| |||||||||||||||| || || |||||||||| |
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|
| T |
40597139 |
tcgaacaaaagatagtgcaatcatgtcaattttattgggaacaccccaaaccataatatcttccctgtctttctcagtcaaagtgggaagatccactaca |
40597238 |
T |
|
| Q |
415 |
actccaggaagatt |
428 |
Q |
| |
|
|||||||| ||||| |
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|
| T |
40597239 |
actccaggcagatt |
40597252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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