View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9503_low_4 (Length: 250)
Name: NF9503_low_4
Description: NF9503
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9503_low_4 |
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| [»] scaffold0204 (1 HSPs) |
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Alignment Details
Target: scaffold0204 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0204
Description:
Target: scaffold0204; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 13569 - 13320
Alignment:
| Q |
1 |
tcgtaagcgatatggtttatgaactgacagccaacacatatcagattcacgtaccaaccacccctgcaaccaaacagcaaacatcacagccctctcgagc |
100 |
Q |
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|||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
13569 |
tcgtaagcagtatggtttatgaaccgacatccaacacatatcagattcacgtaccaaccacccctgcaaccaaacagcaagcatcacaaccctctcgagc |
13470 |
T |
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| Q |
101 |
ttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactcccataaatgaaacttactgaaacatgaaccagtcgcacc |
200 |
Q |
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| T |
13469 |
ttcccaatccacgcctaacatttacacaacgttgaaggtgaaggacacaaaacaaagactcccataaaagaaacttactgaaacatgaaccagtctcacc |
13370 |
T |
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| Q |
201 |
gtaacatggcttccgacagcaacacacacgcagcggccgcaagaaggaaa |
250 |
Q |
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| T |
13369 |
gtaacatggcttccgacagcaacacacacgcagcggccgcaagaaggaaa |
13320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 8315021 - 8315184
Alignment:
| Q |
1 |
tcgtaagcgatatggtttatgaactgacagccaacacatatcagattcacgtaccaaccacccctgcaaccaaacagcaaacatcacagccctctcgagc |
100 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||| |||| |
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| T |
8315021 |
tcgtatgcgatatggtttatgaaccgacagccaacacatatcagattcacgtaccaatcacccctgcaaccaaacagtaagcatcacagccctcttgagc |
8315120 |
T |
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| Q |
101 |
ttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactccca |
164 |
Q |
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| T |
8315121 |
ttcccaatccacgcctaacatttacacaacgttgaaggcgaaggacacagaacagagactccca |
8315184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 100
Target Start/End: Complemental strand, 4159682 - 4159593
Alignment:
| Q |
11 |
tatggtttatgaactgacagccaacacatatcagattcacgtaccaaccacccctgcaaccaaacagcaaacatcacagccctctcgagc |
100 |
Q |
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|||||||||||||||||| |||||||| || | ||||||||| ||||| |||||||||| ||| ||||| ||||||||||||||||||| |
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| T |
4159682 |
tatggtttatgaactgacccccaacacagattaaattcacgtaacaaccgcccctgcaacaaaagagcaagcatcacagccctctcgagc |
4159593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 66
Target Start/End: Complemental strand, 25899065 - 25899008
Alignment:
| Q |
9 |
gatatggtttatgaactgacagccaacacatatcagattcacgtaccaaccacccctg |
66 |
Q |
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|||||||||||||||| ||| |||||||||||||| ||||| |||||| || |||||| |
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| T |
25899065 |
gatatggtttatgaaccgactgccaacacatatcaaattcatgtaccagccgcccctg |
25899008 |
T |
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