View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_high_10 (Length: 409)

Name: NF9504_high_10
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_high_10
NF9504_high_10
[»] chr3 (6 HSPs)
chr3 (1-394)||(4547061-4547454)
chr3 (96-343)||(3095572-3095819)
chr3 (96-333)||(3081135-3081372)
chr3 (340-394)||(3095843-3095897)
chr3 (338-388)||(3081404-3081454)
chr3 (211-281)||(3103826-3103896)
[»] chr8 (9 HSPs)
chr8 (177-328)||(15692058-15692209)
chr8 (100-328)||(15696453-15696681)
chr8 (180-320)||(15721754-15721894)
chr8 (188-253)||(15763667-15763732)
chr8 (193-285)||(15703096-15703188)
chr8 (188-253)||(15804699-15804764)
chr8 (180-286)||(15710708-15710814)
chr8 (188-282)||(15799056-15799150)
chr8 (180-282)||(15812456-15812558)
[»] chr1 (1 HSPs)
chr1 (180-225)||(47593954-47593999)


Alignment Details
Target: chr3 (Bit Score: 355; Significance: 0; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 4547454 - 4547061
Alignment:
Q  1 aattttatcatggatacaaaatcatatcaaacccaaataattgatgttacnnnnnnnnntgcatgttttaagtagattttctaaatatacattacatgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||||||||||||||    
T  4547454 aattttatcatggatacaaaatcatatcaaacccaaataattgatgttacaaaaaaaaatgcatgttttaagtagattttctaaatatacattacatgca 4547355  T
Q  101 tgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatccaatactgaaaaatacatacataagcaatgaagttatgaagtgcataca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4547354 tgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatacaatactgaaaaatacatacataagcaatgaagttatgaagtgtataca 4547255  T
Q  201 tattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatggcacttcccaatcct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  4547254 tattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatagcacttcccaatcct 4547155  T
Q  301 aaacatcctgcattttcagttggaagaaaagtaaatgatgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatat 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4547154 aaacatcctgcattttcagttggaagaaaagtaaatgatgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatat 4547061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 96 - 343
Target Start/End: Original strand, 3095572 - 3095819
Alignment:
Q  96 atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatccaatactgaaaaatacatacataagcaatgaagttatgaagtgc 195  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||||| || |||    
T  3095572 atgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc 3095671  T
Q  196 atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatggcacttccca 295  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  3095672 atacacattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca 3095771  T
Q  296 atcctaaacatcctgcattttcagttggaagaaaagtaaatgatgatc 343  Q
    ||||||| ||||| ||||||||||||||||||||||||| ||||||||    
T  3095772 atcctaatcatccagcattttcagttggaagaaaagtaactgatgatc 3095819  T

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Target: chr3; HSP #3
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 96 - 333
Target Start/End: Original strand, 3081135 - 3081372
Alignment:
Q  96 atgcatgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatccaatactgaaaaatacatacataagcaatgaagttatgaagtgc 195  Q
    |||||||||||||||||||||||||||| |||  ||||||||||||||||| ||||||||||||||||||||||||| ||  ||||||||||| || |||    
T  3081135 atgcatgcagagttggaatctttggtgtgaagataaaagtttggaactgttagatccaatactgaaaaatacatacacaacaaatgaagttattaaatgc 3081234  T
Q  196 atacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatggcacttccca 295  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||    
T  3081235 atacacattggtttgttatgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtaatgctagcaagtgacacaatgacacttccca 3081334  T
Q  296 atcctaaacatcctgcattttcagttggaagaaaagta 333  Q
    ||||||| ||||| ||||||||||||||||||||||||    
T  3081335 atcctaatcatccagcattttcagttggaagaaaagta 3081372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 3095843 - 3095897
Alignment:
Q  340 gatccttctgttaatgaagtaacaatatcaaatatttttcctaggtaggggatat 394  Q
    |||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  3095843 gatccttctgttaatgaagttacaatatcaaatgtttttcctaggtaggggatat 3095897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 338 - 388
Target Start/End: Original strand, 3081404 - 3081454
Alignment:
Q  338 atgatccttctgttaatgaagtaacaatatcaaatatttttcctaggtagg 388  Q
    ||||||||||||| |||||||||||| || |||||||||| ||||||||||    
T  3081404 atgatccttctgtcaatgaagtaacagtaacaaatattttacctaggtagg 3081454  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 3103826 - 3103896
Alignment:
Q  211 ttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacac 281  Q
    ||||||||||||||||||||||  |||||||| || ||||| | |||||||  |||||| ||| |||||||    
T  3103826 ttgtgtgtacaagaagatgcagcagatagacctacaatgtcaagtgttgttcacatgcttgcaggtgacac 3103896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 177 - 328
Target Start/End: Complemental strand, 15692209 - 15692058
Alignment:
Q  177 caatgaagttatgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagt 276  Q
    |||||| ||| ||| ||||||| | || ||| | |||||||| ||||||||||| |  ||||||||||||||||| | ||||||||| ||| |||| |||    
T  15692209 caatgaggttgtgaggtgcataaacataggtcttttgtgtgttcaagaagatgcggcagatagaccaaccatgtcaactgttgttgtaatgttggctagt 15692110  T
Q  277 gacacaatggcacttcccaatcctaaacatcctgcattttcagttggaagaa 328  Q
    ||||||||| | ||||| || || ||||| |||||||||||| |||||||||    
T  15692109 gacacaatgacccttccaaaacccaaacaacctgcattttcaattggaagaa 15692058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 328
Target Start/End: Complemental strand, 15696681 - 15696453
Alignment:
Q  100 atgcagagttggaatctttggtgtcaaggaaaaagtttggaactgttggatccaatactgaaaaatacatacataagcaatgaagttatgaagtgcatac 199  Q
    ||||||| |||||| ||||||||| |||||||||| |||||| |  | |||||||| |  |||||  |||||||    | ||| ||||||||||||||||    
T  15696681 atgcagacttggaagctttggtgtgaaggaaaaagcttggaattaatagatccaatccacaaaaaatcatacattgaaagtgaggttatgaagtgcatac 15696582  T
Q  200 atattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatggcacttcccaatcc 299  Q
    | |||||||| |||||||||||| ||||||| |  ||| |||||||||||||||  || ||||  ||||| |  |||||||||||| |  |||| || ||    
T  15696581 acattggtttattgtgtgtacaacaagatgctgcagatcgaccaaccatgtccacggtcgttgctatgctaggcagtgacacaatgcccattccaaaacc 15696482  T
Q  300 taaacatcctgcattttcagttggaagaa 328  Q
     || || || ||||||||||| |||||||    
T  15696481 caagcaaccggcattttcagtaggaagaa 15696453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 180 - 320
Target Start/End: Complemental strand, 15721894 - 15721754
Alignment:
Q  180 tgaagttatgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac 279  Q
    |||||| ||||| |||||||| || ||||| ||||||||||||||||||||||  ||| ||||||| |||||||  |||||||||||||| |  ||||||    
T  15721894 tgaagtaatgaaatgcatacacataggtttattgtgtgtacaagaagatgcagcagatcgaccaacaatgtccaccgttgttgtcatgctaggtagtgac 15721795  T
Q  280 acaatggcacttcccaatcctaaacatcctgcattttcagt 320  Q
    |||||  | ||||| ||||| || |  || |||||||||||    
T  15721794 acaataacccttccaaatcccaagccaccagcattttcagt 15721754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 15763732 - 15763667
Alignment:
Q  188 tgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca 253  Q
    ||||||| ||||| |||||||| ||||||||||||||||||||||  ||| |||||||||| ||||    
T  15763732 tgaagtgtatacacattggtttattgtgtgtacaagaagatgcagcagatcgaccaaccatttcca 15763667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 193 - 285
Target Start/End: Complemental strand, 15703188 - 15703096
Alignment:
Q  193 tgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacacaatg 285  Q
    |||||||| | |||||| |||||  |||||||||||||||  ||| |||||||||||||||  || ||| ||||||| | |||||||||||||    
T  15703188 tgcatacacaatggtttattgtgcatacaagaagatgcagcagatcgaccaaccatgtccaccgtcgttctcatgctaggaagtgacacaatg 15703096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 188 - 253
Target Start/End: Complemental strand, 15804764 - 15804699
Alignment:
Q  188 tgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtcca 253  Q
    ||||||| ||||| ||||||||  | |||||||||||||||||||  ||| |||||||||||||||    
T  15804764 tgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaaccatgtcca 15804699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 286
Target Start/End: Complemental strand, 15710814 - 15710708
Alignment:
Q  180 tgaagttatgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac 279  Q
    |||||||||||||||| |||| || ||||| |||||||| || ||||| || |  ||| |||||||||||||||   ||||| ||||||| |  || |||    
T  15710814 tgaagttatgaagtgcgtacacatcggtttattgtgtgtgcaggaagacgctgcagatcgaccaaccatgtccaccattgttctcatgctaggcagcgac 15710715  T
Q  280 acaatgg 286  Q
    |||||||    
T  15710714 acaatgg 15710708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 188 - 282
Target Start/End: Complemental strand, 15799150 - 15799056
Alignment:
Q  188 tgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgacaca 282  Q
    ||||||| ||||| ||||||||  | |||||||||||||||||||  ||| ||||||| |||||||  ||||||  |||||| |  |||||||||    
T  15799150 tgaagtgtatacacattggtttactttgtgtacaagaagatgcagcagatcgaccaacgatgtccaccgttgttcgcatgctagggagtgacaca 15799056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 282
Target Start/End: Complemental strand, 15812558 - 15812456
Alignment:
Q  180 tgaagttatgaagtgcatacatattggtttgttgtgtgtacaagaagatgcagtggatagaccaaccatgtccaatgttgttgtcatgctggcaagtgac 279  Q
    |||||| |||||||| || || |||||||| ||||| ||||||||||| ||||  ||||| ||||| |||||||  ||||||  |||||| |  ||||||    
T  15812558 tgaagtcatgaagtgtattcacattggtttattgtgcgtacaagaagacgcagcagataggccaacgatgtccatcgttgttcgcatgctagggagtgac 15812459  T
Q  280 aca 282  Q
    |||    
T  15812458 aca 15812456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 47593954 - 47593999
Alignment:
Q  180 tgaagttatgaagtgcatacatattggtttgttgtgtgtacaagaa 225  Q
    ||||||||| ||||||||||| ||||||||||| ||||| ||||||    
T  47593954 tgaagttattaagtgcatacagattggtttgttatgtgttcaagaa 47593999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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