View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_high_12 (Length: 406)
Name: NF9504_high_12
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 9 - 389
Target Start/End: Original strand, 5331604 - 5331979
Alignment:
| Q |
9 |
aatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcgga |
108 |
Q |
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| T |
5331604 |
aatgaagaattaattggactcgtgaaaatttgtaaccctttctcagggccaccaaactacagctacagtccacacaattgccctcgtgatgccattcgga |
5331703 |
T |
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| Q |
109 |
ttggagatttaccaaaagtaagtcacgaaactctcacgctgaatgaatagtcttgtaagattcgacttttctcataggcttaagtcatacctacggtcta |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
5331704 |
ttggagatttaccaaaagtaagtcacgaaactctcacgctaaatgaatagtcttgtaagattcgacttttctcataggcttaagtcataactacggtcta |
5331803 |
T |
|
| Q |
209 |
ctagtgcttttcttgagagttaagttacgtaaaaggcggcctatagactttattaaggttcaccattgaataccaatagacgagtgaagctgccaaagag |
308 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5331804 |
ctagtgcttttcttgagagttaagttacgtaacgggcggcctatagactttattaaggttcaccattgaataccaatagacgagtgaagctgccaaagag |
5331903 |
T |
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| Q |
309 |
gaaatgactaccatcgtccaccagatcagtgtaaagggagtgaaagtcgttgtgatcatcggttcttaaaggagtggcaat |
389 |
Q |
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||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
5331904 |
gaaatgactaccatcgtccac-----cagtgtaaagagagtaaaagtcgttgtgatcatcggttcttaaaggagtggcaat |
5331979 |
T |
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