View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9504_high_17 (Length: 337)

Name: NF9504_high_17
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9504_high_17
NF9504_high_17
[»] chr2 (2 HSPs)
chr2 (18-337)||(37766819-37767138)
chr2 (255-299)||(12785921-12785965)
[»] chr7 (4 HSPs)
chr7 (255-314)||(28727731-28727790)
chr7 (260-314)||(36598329-36598383)
chr7 (265-309)||(20553151-20553195)
chr7 (260-308)||(36537957-36538005)
[»] chr3 (5 HSPs)
chr3 (255-314)||(1810020-1810079)
chr3 (256-309)||(1217769-1217822)
chr3 (260-313)||(20467159-20467212)
chr3 (260-314)||(42817195-42817249)
chr3 (265-309)||(36445873-36445917)
[»] chr6 (2 HSPs)
chr6 (260-309)||(21024259-21024308)
chr6 (265-314)||(34939787-34939836)
[»] chr5 (2 HSPs)
chr5 (256-309)||(41957420-41957473)
chr5 (255-299)||(12595684-12595728)
[»] chr8 (2 HSPs)
chr8 (255-314)||(11569425-11569484)
chr8 (256-309)||(30259162-30259215)
[»] chr1 (4 HSPs)
chr1 (260-314)||(27140521-27140575)
chr1 (264-314)||(28689429-28689479)
chr1 (265-314)||(38170668-38170717)
chr1 (255-299)||(1662631-1662675)
[»] chr4 (1 HSPs)
chr4 (256-309)||(37863923-37863976)


Alignment Details
Target: chr2 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 337
Target Start/End: Complemental strand, 37767138 - 37766819
Alignment:
Q  18 tgtttattcttcaagcttatgataggttgaatggagttgtgtgattagttaattcaaattgtggacctgagggtttaggtttaaacaccaatgtttcaag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37767138 tgtttattcttcaagcttatgataggttgaatggagttgtgtgattagttaattcaaattgtggacctgagggtttaggtttaaacaccaatgtttcaag 37767039  T
Q  118 tcattatgttaacaacatttttcaggggtcaaatcgttgaattagccaatctgaaatgcaataaaaaatacatactatatgaaggcacttcaaaatggaa 217  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||    
T  37767038 tcattatgttaacaacattttttaggggtcaaatcgttgaattaaccaatctgaaatgcaataaaaaatacatactatacgaacgcacttcaaaatggaa 37766939  T
Q  218 gttagcagtttgtagcttgtgtgtacacttgtcatgggactatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctttat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37766938 gttagcagtttgtagcttgtgtgtacacttgtcatgggactatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctttat 37766839  T
Q  318 ttctactagtattctatgat 337  Q
    ||||||||||||||||||||    
T  37766838 ttctactagtattctatgat 37766819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 12785965 - 12785921
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcata 299  Q
    ||||||||||||||||||||||||||  |||| ||||||| ||||    
T  12785965 gactatttgagagagcttacggaaacaacttacgacatgtccata 12785921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 28727731 - 28727790
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||| |||||||||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  28727731 gactgtttgagagagcttatggaaacggcttatgacatgttcgtatgttgttttcagctt 28727790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 36598329 - 36598383
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||||||||||||| ||||||  ||||||||||||||||| | ||||||| ||||    
T  36598329 tttgagagagcttatggaaacatcttatgacatgttcataagctgttttcagctt 36598383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 20553195 - 20553151
Alignment:
Q  265 gagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    ||||||||| |||||| ||||| |||||||||||| |||||||||    
T  20553195 gagagcttatggaaacagcttacgacatgttcataagttgttttc 20553151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 308
Target Start/End: Complemental strand, 36538005 - 36537957
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgtttt 308  Q
    ||||||||| |||| ||||||  ||||||||||||||||| ||||||||    
T  36538005 tttgagagaacttatggaaacaacttatgacatgttcataagttgtttt 36537957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 255 - 314
Target Start/End: Complemental strand, 1810079 - 1810020
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    ||||||||||||||||||||||||||  |||||||||||| |||  ||||||||| ||||    
T  1810079 gactatttgagagagcttacggaaacaacttatgacatgtccatgagttgttttctgctt 1810020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 1217769 - 1217822
Alignment:
Q  256 actatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    ||||||||  ||||||||||||||| ||||||||||||| |||| |||||||||    
T  1217769 actatttggaagagcttacggaaacagcttatgacatgtccataagttgttttc 1217822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 313
Target Start/End: Original strand, 20467159 - 20467212
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggct 313  Q
    |||||||||||| | |||||| | |||||||||||||||||| |||||||||||    
T  20467159 tttgagagagctaatggaaacagtttatgacatgttcatatgctgttttcggct 20467212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Original strand, 42817195 - 42817249
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||||||||||||| |||||| || |||||||||| |||| ||||||||| ||||    
T  42817195 tttgagagagcttatggaaacagcatatgacatgtccataagttgttttcagctt 42817249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 36445917 - 36445873
Alignment:
Q  265 gagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    ||||||||| |||||| |||||||||||||||||  |||||||||    
T  36445917 gagagcttaaggaaactgcttatgacatgttcattagttgttttc 36445873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 260 - 309
Target Start/End: Complemental strand, 21024308 - 21024259
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    |||| |||| ||||||||||| ||||||||||| ||||||||||||||||    
T  21024308 tttgtgagaacttacggaaaccgcttatgacatattcatatgttgttttc 21024259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 34939836 - 34939787
Alignment:
Q  265 gagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||||||||||||||| ||||||||||||| ||||  |||||||| ||||    
T  34939836 gagagcttacggaaacagcttatgacatgtccataaattgttttcagctt 34939787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 41957420 - 41957473
Alignment:
Q  256 actatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    ||||||||  ||||||||||||||| ||||||||||||| |||| |||||||||    
T  41957420 actatttggaagagcttacggaaacagcttatgacatgtccataagttgttttc 41957473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Original strand, 12595684 - 12595728
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcata 299  Q
    ||||||||||||||||||| |||||| ||||||  ||||||||||    
T  12595684 gactatttgagagagcttaaggaaacagcttattgcatgttcata 12595728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 255 - 314
Target Start/End: Original strand, 11569425 - 11569484
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||| ||| |||||||||| |||||| ||||||||||||| |||| ||||||||| ||||    
T  11569425 gactgtttaagagagcttatggaaacagcttatgacatgtacataagttgttttcagctt 11569484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 30259215 - 30259162
Alignment:
Q  256 actatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    |||||||||||||||||| |||||| |||||||| ||||  ||| |||||||||    
T  30259215 actatttgagagagcttatggaaacagcttatgatatgtctataagttgttttc 30259162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 27140575 - 27140521
Alignment:
Q  260 tttgagagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    |||||||||| ||| |||||| ||||||||||||| |||| ||||||||| ||||    
T  27140575 tttgagagagtttaaggaaacagcttatgacatgtccataagttgttttcagctt 27140521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 264 - 314
Target Start/End: Original strand, 28689429 - 28689479
Alignment:
Q  264 agagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    ||||| ||||||||||| ||||||||||||| |||| ||||||||| ||||    
T  28689429 agagaacttacggaaacagcttatgacatgtccataagttgttttcagctt 28689479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 38170668 - 38170717
Alignment:
Q  265 gagagcttacggaaacggcttatgacatgttcatatgttgttttcggctt 314  Q
    ||||||||| | |||| |||||||||||||||||| ||||||||| ||||    
T  38170668 gagagcttatgaaaacagcttatgacatgttcataagttgttttcagctt 38170717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 1662675 - 1662631
Alignment:
Q  255 gactatttgagagagcttacggaaacggcttatgacatgttcata 299  Q
    ||||||||| ||||||||||||||||  |||||||||||| ||||    
T  1662675 gactatttgcgagagcttacggaaacaacttatgacatgtccata 1662631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 309
Target Start/End: Original strand, 37863923 - 37863976
Alignment:
Q  256 actatttgagagagcttacggaaacggcttatgacatgttcatatgttgttttc 309  Q
    ||||||||||||| |||| | |||| |||||||||| ||||||| |||||||||    
T  37863923 actatttgagagaacttatgaaaacagcttatgacacgttcataagttgttttc 37863976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University