View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_high_2 (Length: 652)
Name: NF9504_high_2
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_high_2 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 22 - 517
Target Start/End: Original strand, 13447418 - 13447913
Alignment:
| Q |
22 |
cgacagacgcctcaacgacgacaccaatggatcaccaacacgacaagagatccatcgaaaaaa-tacaacagtgttggtgcacagattgtagatgattga |
120 |
Q |
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| T |
13447418 |
cgacagacgcctcaacgacgacaccaatggatcatcaacacgacaagagatccatcgaaaaaaatacaacagtgttggtgcacagattgtagatgattga |
13447517 |
T |
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| Q |
121 |
aaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcnnnnnnnnnnnnnnnngac |
220 |
Q |
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| T |
13447518 |
aaaccagacatgaaagaaatgcattcgaaccaaacttggtatgtatagcgaatgaaacaaattaggggctaatcttcggtcaaaagaaaaagaaacagac |
13447617 |
T |
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| Q |
221 |
aggatcccacaaaatctagagatttaaagtacagaaaccagctttacaggattcttccatttcattcgactgtaaacaacagcaatgtcagactgacaga |
320 |
Q |
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| T |
13447618 |
aggatcccacaaaatctagagatttaaagtacaggaaccagctttacaggattcttccatttcattcgactgtaaacaacggcaatgtcagactgacaga |
13447717 |
T |
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| Q |
321 |
agtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaa |
420 |
Q |
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| T |
13447718 |
agtgttgacataaacactctcgcagttgaaaaattaaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaaattgaatcaaa |
13447817 |
T |
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| Q |
421 |
acaattaagtttaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg |
517 |
Q |
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| T |
13447818 |
acaattaag-gaaaactattcgaaaattcatgttaaatctgccagagtagctaaatgttacttcattgatttgagagtacttgtggcaggtattgtg |
13447913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 576 - 652
Target Start/End: Original strand, 13447972 - 13448048
Alignment:
| Q |
576 |
cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaatt |
652 |
Q |
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| T |
13447972 |
cattcacacttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaatt |
13448048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 433 - 516
Target Start/End: Original strand, 13454315 - 13454399
Alignment:
| Q |
433 |
aaactattcgaaaattcatgttaaatctgccagagtagctaaat-gttacttcattgatttgagagtacttgtggcaggtattgt |
516 |
Q |
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| T |
13454315 |
aaactattcaaaaattcatattaaatctgccatggtagctatattgttgcttcattgatttgagagtacttgtcgcagatattgt |
13454399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 346 - 409
Target Start/End: Original strand, 13454185 - 13454249
Alignment:
| Q |
346 |
ttgaaaaatt-aaaataaatgcaaaaacacattaagaagttagaatagccacgtacacaccaaaa |
409 |
Q |
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| T |
13454185 |
ttgaaaaattgaaaataaatgcgaaaacacattaagaagttagaagaaccacgtacacaacaaaa |
13454249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 583 - 652
Target Start/End: Original strand, 13454468 - 13454537
Alignment:
| Q |
583 |
acttccgcttgacgaaaccacgatgttattaggaaaagttgaaaaaatttagacaatactcatttgaatt |
652 |
Q |
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| T |
13454468 |
acttctgcttgacgaaacaacaatgttattagaaaaagttgaaaaaacttacacaatgctcctttgaatt |
13454537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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