View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9504_high_21 (Length: 296)
Name: NF9504_high_21
Description: NF9504
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9504_high_21 |
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Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 19 - 272
Target Start/End: Original strand, 7558545 - 7558798
Alignment:
| Q |
19 |
aactcaattcaagagcttctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatg |
118 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |
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| T |
7558545 |
aactcaattcaagagcctctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaattgatgtgtaatg |
7558644 |
T |
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| Q |
119 |
ttaggttagctatctaattatgataaaacatttacaggaaactaatataacaaattacaaccaaatattctattttatcatgatgtgtactagtttcgtg |
218 |
Q |
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|||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
7558645 |
ttaggtcagctatctaattataataaaacatttacaggaaactaatataacaaattacaaccaaatattctattctatcatgatgtgtactagttttgtg |
7558744 |
T |
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| Q |
219 |
aaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
272 |
Q |
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| T |
7558745 |
aaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
7558798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 7593812 - 7593885
Alignment:
| Q |
199 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
272 |
Q |
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| T |
7593812 |
tgatgtgtactagtttagtgaaaataagatctcttagatcacctttagattgcaatagatatgcattccatgaa |
7593885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 8993434 - 8993162
Alignment:
| Q |
19 |
aactcaattcaagagcttctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttnnnnnnnntcgatgtgtaatg |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| |
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| T |
8993434 |
aactcaattcaagagcttctatcctccttcatgttaggtcaacagaatatatatacatcgatgtgtaatgttagtccttaaaaaaaatcaatgtgtaatg |
8993335 |
T |
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| Q |
119 |
ttaggttagctatctaattatgataaaacatt-------------------tacaggaaactaatataacaaattacaaccaaatattctattttatcat |
199 |
Q |
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|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
8993334 |
ttaggtcagctatctaattatgataaaacattccttcaaaaaaaaaacatttacaggaaactaatataacaaattacgaccaaatattctattctatcat |
8993235 |
T |
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| Q |
200 |
gatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
272 |
Q |
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| T |
8993234 |
gatgtgtactagttttgtgaaaataagatctcttaaatcacctttagattgaaatatacatgcattccatgaa |
8993162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 8968255 - 8968182
Alignment:
| Q |
199 |
tgatgtgtactagtttcgtgaaaataagatctcttaaatcacctttagattgaaatatatatgcattccatgaa |
272 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
8968255 |
tgatgtgtactagtttagtgaaaataagatctcttaaatcacctttagattgcaatagatatgcattccatgaa |
8968182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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